Experiment set2IT065 for Agrobacterium fabrum C58

Compare to:

Xylitol carbon source

200 most important genes:

  gene name fitness t score description  
Atu3754 -10.3 -6.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1850 -7.2 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0038 -7.1 -4.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2264 -6.9 -4.8 2-isopropylmalate synthase compare
Atu1750 -6.9 -6.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -6.8 -9.3 anthranilate phosphoribosyltransferase compare
Atu2289 -6.7 -12.9 anthranilate synthase component I and II compare
Atu1308 -6.6 -6.5 aspartate carbamoyl transferase catalytic subunit compare
Atu1588 -6.5 -6.4 homoserine dehydrogenase compare
Atu2650 -6.4 -12.3 glycerol-3-phosphate dehydrogenase compare
Atu0432 -6.4 -7.6 O-succinylhomoserine sulfhydrylase compare
Atu1205 -6.3 -9.7 threonine dehydratase compare
Atu0298 -6.3 -4.3 orotidine 5 compare
Atu2709 -6.2 -14.5 3-isopropylmalate dehydratase, large subunit compare
Atu2791 -6.2 -7.3 3-isopropylmalate dehydrogenase compare
Atu4482 -6.1 -11.0 xylulokinase conserved
Atu2036 -6.0 -10.9 acetolactate synthase III, large subunit compare
Atu0099 -6.0 -11.5 prephenate dehydratase compare
Atu2726 -5.9 -20.1 pyruvate carboxylase compare
Atu0679 -5.8 -5.7 ATP phosphoribosyltransferase compare
Atu2040 -5.7 -3.9 phosphoserine phosphatase compare
Atu3706 -5.6 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu0537 -5.5 -3.8 histidinol dehydrogenase compare
Atu0030 -5.5 -2.3 phosphocarrier protein HPr compare
Atu0486 -5.4 -6.5 dihydroorotate dehydrogenase compare
Atu3707 -5.4 -3.7 phosphoserine aminotransferase compare
Atu0678 -5.3 -3.7 histidyl-tRNA synthetase compare
Atu2718 -5.2 -8.7 homoserine O-succinyltransferase compare
Atu0017 -5.1 -3.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1844 -5.1 -4.9 Phosphoribosylformylglycinamidine synthetase compare
Atu1141 -5.1 -8.5 Phosphoribosylglycinamide synthetase compare
Atu1688 -5.1 -6.0 indole-3-glycerol-phosphate synthase compare
Atu1307 -5.0 -8.4 dihydroorotase compare
Atu1075 -4.9 -8.1 amidophosphoribosyltransferase compare
Atu3482 -4.8 -8.7 pantoate--beta-alanine ligase compare
Atu2790 -4.7 -2.7 3-isopropylmalate dehydratase, small subunit compare
Atu3885 -4.6 -6.6 inositol monophosphatase compare
Atu3755 -4.6 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1140 -4.6 -5.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0400 -4.6 -6.1 orotate phosphoribosyltransferase compare
Atu1845 -4.5 -6.8 phosphoribosylformylglycinamidine synthase I compare
Atu0399 -4.4 -6.0 dihydroorotase compare
Atu0647 -4.3 -6.0 phosphoribosylamine--glycine ligase compare
Atu4711 -4.3 -10.0 two component sensor kinase compare
Atu0043 -4.3 -2.9 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -4.1 -2.8 glutamine amidotransferase compare
Atu2015 -4.1 -14.1 aminotransferase compare
Atu0641 -4.1 -4.8 hypothetical protein compare
Atu0039 -4.1 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.0 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3739 -4.0 -4.0 phosphoglycerate kinase compare
Atu0434 -3.8 -3.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1456 -3.7 -13.2 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3483 -3.7 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0769 -3.4 -3.3 protoheme IX farnesyltransferase compare
Atu3337 -3.4 -13.3 LacI family transcriptional regulator compare
Atu6098 -3.3 -1.4 transcriptional regulator, HTH family compare
Atu3783 -3.3 -15.5 glutamate synthase subunit beta compare
Atu1454 -3.0 -9.0 siroheme synthase compare
Atu2155 -2.9 -18.4 methionine synthase compare
Atu4685 -2.9 -10.2 LacI family transcriptional regulator compare
Atu3469 -2.9 -3.4 phosphoglyceromutase compare
Atu1462 -2.7 -13.7 glycine cleavage system protein P2 compare
Atu1589 -2.7 -8.7 aminotransferase, class I compare
Atu0063 -2.6 -7.4 ABC transporter, substrate binding protein (sugar) compare
Atu3731 -2.6 -9.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu3784 -2.6 -19.9 glutamate synthase large subunit compare
Atu1359 -2.5 -1.7 dnaK deletion suppressor protein compare
Atu1464 -2.4 -9.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu0040 -2.4 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0064 -2.3 -8.8 ABC transporter, membrane spanning protein (sugar) compare
Atu4674 -2.3 -9.7 GntR family transcriptional regulator compare
Atu0065 -2.3 -7.1 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu1463 -2.2 -4.6 glycine cleavage system component H compare
Atu2747 -2.1 -11.4 hypothetical protein compare
Atu4702 -2.0 -8.9 GntR family transcriptional regulator compare
Atu4032 -1.9 -9.7 sugar ABC transporter ATPase compare
Atu1455 -1.8 -3.5 hypothetical protein compare
Atu0660 -1.8 -7.3 hydrolase compare
Atu1286 -1.8 -5.4 hypothetical protein compare
Atu1439 -1.7 -2.4 hypothetical protein compare
Atu4031 -1.7 -9.0 sugar ABC transporter permease compare
Atu2548 -1.7 -12.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4030 -1.7 -8.9 sugar ABC transporter permease compare
Atu5430 -1.7 -1.5 hypothetical protein compare
Atu2238 -1.6 -8.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0101 -1.6 -4.3 cytochrome c compare
Atu1686 -1.6 -11.1 peptidyl-prolyl cis-trans isomerse D compare
Atu4098 -1.6 -10.6 quinolinate synthetase compare
Atu0503 -1.6 -11.0 enoyl-CoA hydratase compare
Atu4033 -1.6 -8.4 sugar ABC transporter substrate-binding protein compare
Atu0981 -1.6 -8.7 glutamate-ammonia-ligase adenylyltransferase compare
Atu0590 -1.6 -6.1 transcriptional regulator repressor compare
Atu3289 -1.6 -5.0 thiamine-phosphate pyrophosphorylase compare
Atu0029 -1.6 -5.5 S-adenosylhomocysteine hydrolase compare
Atu4035 -1.5 -7.4 two component response regulator compare
Atu3730 -1.5 -1.5 hypothetical protein compare
Atu0792 -1.5 -5.6 hypothetical protein compare
Atu3908 -1.5 -8.5 GntR family transcriptional regulator compare
Atu8118 -1.5 -7.3 putative universal stress protein compare
Atu4034 -1.4 -7.6 two component sensor kinase compare
Atu4096 -1.4 -7.8 nicotinate-nucleotide pyrophosphorylase compare
Atu4530 -1.4 -6.0 TetR family transcriptional regulator compare
Atu6114 -1.4 -1.6 hypothetical protein compare
Atu0501 -1.4 -9.0 acyl-CoA dehydrogenase compare
Atu1446 -1.3 -2.5 two component response regulator compare
Atu0768 -1.3 -8.8 cytochrome-c oxidase chain I compare
Atu3290 -1.3 -6.8 phosphomethylpyrimidine kinase compare
Atu3468 -1.3 -1.2 hypothetical protein compare
Atu3598 -1.3 -2.3 thiol:disulfide interchange protein compare
Atu0502 -1.3 -5.1 acetyl-CoA acetyltransferase compare
Atu1685 -1.3 -1.3 hypothetical protein compare
Atu2532 -1.3 -3.4 transcriptional regulator, MarR family compare
Atu1457 -1.3 -1.8 hypothetical protein compare
Atu2209 -1.3 -3.4 pyrroline-5-carboxylate reductase compare
Atu1242 -1.3 -5.8 cytochrome oxidase assembly factor compare
Atu4173 -1.3 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu0346 -1.2 -2.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0598 -1.2 -6.1 phosphogluconate dehydratase compare
Atu4576 -1.2 -7.6 ROK family transcriptional regulator compare
Atu3144 -1.2 -4.2 GntR family transcriptional regulator compare
Atu2237 -1.1 -3.7 cytochrome c1 compare
Atu1774 -1.1 -6.0 ABC transporter, substrate binding protein (peptide) compare
Atu2239 -1.1 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0770 -1.1 -3.5 cytochrome C oxidase assembly protein compare
Atu1714 -1.1 -1.7 exonuclease III compare
Atu4317 -1.1 -2.2 TetR family transcriptional regulator compare
Atu3997 -1.1 -6.9 biotin synthetase compare
Atu2569 -1.1 -6.5 thiamine biosynthesis protein compare
Atu5125 -1.1 -3.7 GntR family transcriptional regulator compare
Atu3288 -1.1 -3.8 hydroxyethylthiazole kinase compare
Atu1739 -1.0 -3.5 permease compare
Atu4319 -1.0 -4.1 AraC family transcriptional regulator conserved
Atu2606 -1.0 -5.1 transcriptional regulator, GntR family compare
Atu4128 -1.0 -7.3 GMC type oxidoreductase compare
Atu1074 -1.0 -6.7 NAD/NADP dependent oxidoreductase compare
Atu0842 -1.0 -1.2 hypothetical protein compare
Atu0795 -1.0 -2.1 hypothetical protein compare
Atu1419 -1.0 -4.4 transcriptional regulator, GntR family compare
Atu4773 -0.9 -1.5 two component response regulator compare
Atu2123 -0.9 -4.2 methylenetetrahydrofolate reductase compare
Atu1696 -0.9 -3.7 hypothetical protein compare
Atu4232 -0.9 -2.9 GntR family transcriptional regulator compare
Atu2740 -0.9 -4.5 transcriptional regulator, GntR family compare
Atu4176 -0.9 -3.2 hypothetical protein compare
Atu4108 -0.9 -4.1 ribonuclease D compare
Atu0771 -0.9 -5.0 cytochrome c oxidase subunit III compare
Atu3963 -0.9 -5.1 GntR family transcriptional regulator compare
Atu0331 -0.8 -1.5 sigma-54 modulation protein compare
Atu2809 -0.8 -4.7 cobalamin biosynthesis protein compare
Atu0767 -0.8 -3.4 cytochrome c oxidase subunit II compare
Atu0031 -0.8 -1.1 PTS system, IIA component compare
Atu5045 -0.8 -1.1 hypothetical protein compare
Atu3115 -0.8 -4.2 TetR family transcriptional regulator compare
Atu1812 -0.8 -3.0 hypothetical protein compare
Atu4824 -0.8 -4.9 IclR family transcriptional regulator compare
Atu8115 -0.8 -3.9 Hypothetical Protein compare
Atu2125 -0.8 -1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2800 -0.8 -2.6 precorrin-3B C17-methyltransferase compare
Atu8023 -0.8 -1.7 hypothetical protein compare
Atu2205 -0.8 -3.4 transcriptional regulator, MarR family compare
Atu0405 -0.8 -6.1 long-chain-fatty-acid-CoA-ligase compare
Atu0976 -0.8 -1.8 cycL protein compare
Atu1077 -0.8 -2.7 DNA repair protein compare
Atu4556 -0.8 -3.9 LacI family transcriptional regulator compare
Atu4792 -0.8 -1.8 hypothetical protein compare
Atu4599 -0.8 -4.7 IclR family transcriptional regulator compare
Atu2484 -0.7 -1.4 hypothetical protein compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu1525 -0.7 -2.6 hypothetical protein compare
Atu0837 -0.7 -3.5 transcriptional regulator, MarR family compare
Atu0659 -0.7 -3.2 NTP pyrophosphohydrolase, MutT family compare
Atu1770 -0.7 -3.7 glutamine synthetase compare
Atu2802 -0.7 -3.7 precorrin-8X methylmutase compare
Atu0538 -0.7 -2.3 hypothetical protein compare
Atu1606 -0.7 -3.5 methionine aminopeptidase compare
Atu1062 -0.7 -1.3 phosphatidylserine synthase compare
Atu2805 -0.7 -2.7 cobalamin synthesis protein compare
Atu8099 -0.7 -1.8 hypothetical protein compare
Atu4148 -0.7 -3.0 UDP-glucuronic acid epimerase compare
Atu5464 -0.7 -3.7 IclR family transcriptional regulator compare
Atu0627 -0.7 -2.5 carboxymethylenebutenolidase compare
Atu1760 -0.7 -1.0 hypothetical protein compare
Atu5043 -0.7 -2.1 hypothetical protein compare
Atu0291 -0.7 -3.8 hypothetical protein compare
Atu0876 -0.7 -1.1 superoxide dismutase compare
Atu0036 -0.7 -1.7 hypothetical protein compare
Atu8203 -0.7 -2.2 hypothetical protein compare
Atu1339 -0.7 -2.0 ribonuclease E compare
Atu2555 -0.7 -2.1 L-lysine 2,3-aminomutase compare
Atu3613 -0.7 -2.1 hypothetical protein compare
Atu1805 -0.6 -2.7 hypothetical protein compare
Atu1203 -0.6 -2.6 hypothetical protein compare
Atu0300 -0.6 -2.5 methyltransferase compare
Atu1005 -0.6 -1.1 hypothetical protein compare
Atu4630 -0.6 -1.6 hypothetical protein compare
Atu2770 -0.6 -2.6 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu3910 -0.6 -2.7 LamB/YcsF family protein compare
Atu3572 -0.6 -3.7 transcriptional regulator compare
Atu3345 -0.6 -1.7 6-pyruvoyl tetrahydrobiopterin synthase compare


Specific Phenotypes

For 24 genes in this experiment

For carbon source Xylitol in Agrobacterium fabrum C58

For carbon source Xylitol across organisms