Experiment set2IT064 for Pseudomonas simiae WCS417

Compare to:

Xylitol carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.6 -5.2 isopropylmalate isomerase compare
PS417_27040 -6.6 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_16465 -6.0 -11.6 sirohydrochlorin ferrochelatase compare
PS417_00185 -5.4 -5.3 tryptophan synthase subunit beta compare
PS417_18585 -5.4 -7.4 3-isopropylmalate dehydrogenase compare
PS417_01855 -5.4 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -5.3 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01575 -5.3 -8.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25720 -5.3 -8.4 anthranilate synthase component II compare
PS417_12690 -5.2 -7.9 xylulose kinase compare
PS417_25725 -5.0 -15.8 anthranilate synthase component I compare
PS417_18560 -4.9 -12.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25715 -4.9 -6.8 anthranilate phosphoribosyltransferase compare
PS417_23800 -4.9 -14.1 ketol-acid reductoisomerase compare
PS417_01565 -4.9 -6.4 imidazole glycerol phosphate synthase compare
PS417_04420 -4.9 -13.1 histidinol dehydrogenase compare
PS417_24745 -4.8 -6.6 gamma-glutamyl phosphate reductase compare
PS417_26740 -4.8 -11.4 homoserine acetyltransferase compare
PS417_23805 -4.7 -7.9 acetolactate synthase 3 regulatory subunit compare
PS417_12855 -4.7 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23545 -4.7 -4.5 gamma-glutamyl kinase compare
PS417_06375 -4.6 -1.9 deoxycytidine triphosphate deaminase compare
PS417_26745 -4.6 -6.8 methionine biosynthesis protein MetW compare
PS417_02510 -4.5 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -4.5 -13.8 acetolactate synthase 3 catalytic subunit compare
PS417_09725 -4.4 -8.4 transporter compare
PS417_01605 -4.2 -2.9 phosphoglycerate mutase compare
PS417_02005 -4.1 -13.7 glutamate synthase compare
PS417_23110 -4.1 -10.8 2-isopropylmalate synthase compare
PS417_01850 -4.0 -10.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18595 -4.0 -3.7 3-isopropylmalate dehydratase compare
PS417_25710 -3.9 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_24155 -3.9 -3.7 ATP-binding protein compare
PS417_02000 -3.8 -16.1 glutamate synthase compare
PS417_12290 -3.8 -9.6 sulfite reductase compare
PS417_27195 -3.8 -2.0 N-acetylglutamate synthase compare
PS417_18530 -3.7 -6.0 O-succinylhomoserine sulfhydrylase compare
PS417_23995 -3.6 -1.4 preprotein translocase subunit SecG compare
PS417_22690 -3.4 -7.2 phosphogluconate dehydratase compare
PS417_17720 -3.4 -5.0 xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) conserved
PS417_20985 -3.3 -5.0 porin compare
PS417_05595 -3.3 -7.4 ornithine carbamoyltransferase compare
PS417_20125 -3.3 -5.5 phosphoribosylglycinamide formyltransferase compare
PS417_26890 -3.3 -7.3 dihydroxy-acid dehydratase compare
PS417_00180 -3.2 -4.1 tryptophan synthase subunit alpha compare
PS417_26730 -3.1 -1.8 pyrroline-5-carboxylate reductase compare
PS417_08220 -3.1 -1.7 epimerase compare
PS417_17735 -3.0 -6.4 LacI family transcriptional regulator compare
PS417_21035 -3.0 -9.5 multidrug transporter compare
PS417_14940 -2.9 -3.7 LysR family transcriptional regulator compare
PS417_26040 -2.8 -5.4 malate synthase compare
PS417_02415 -2.8 -8.0 phosphoserine phosphatase compare
PS417_28220 -2.8 -2.1 LysR family transcriptional regulator compare
PS417_20160 -2.7 -3.6 cysteine synthase compare
PS417_12035 -2.6 -2.0 dihydroxyacetone kinase compare
PS417_01580 -2.4 -1.3 imidazole glycerol phosphate synthase compare
PS417_20610 -2.3 -1.8 hypothetical protein compare
PS417_17725 -2.3 -4.8 ribose ABC transporter permease compare
PS417_01560 -2.2 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_26995 -2.1 -9.6 phosphoserine phosphatase compare
PS417_27435 -2.1 -8.6 polyphosphate kinase compare
PS417_12695 -2.0 -8.2 mannitol dehydrogenase compare
PS417_27795 -2.0 -1.8 orotate phosphoribosyltransferase compare
PS417_27835 -2.0 -6.8 endoribonuclease compare
PS417_27010 -2.0 -10.4 threonine dehydratase compare
PS417_06680 -2.0 -11.8 nuclease PIN compare
PS417_21750 -1.9 -13.6 acetyl-CoA synthetase compare
PS417_24835 -1.9 -7.3 hypothetical protein compare
PS417_18690 -1.9 -5.5 aromatic amino acid aminotransferase compare
PS417_23770 -1.9 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_12040 -1.9 -10.1 dihydroxyacetone kinase compare
PS417_22695 -1.8 -8.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01570 -1.8 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_12065 -1.8 -8.0 xylitol ABC transporter, ATPase component (from data) compare
PS417_08125 -1.8 -1.5 prephenate dehydratase compare
PS417_12050 -1.7 -5.7 short-chain dehydrogenase compare
PS417_22570 -1.7 -1.6 H-NS histone compare
PS417_01710 -1.7 -6.3 histidine utilization repressor compare
PS417_06200 -1.7 -5.0 protein-PII uridylyltransferase compare
PS417_09705 -1.7 -3.1 hypothetical protein compare
PS417_27875 -1.7 -9.9 histidine kinase compare
PS417_24935 -1.6 -1.2 hypothetical protein compare
PS417_21125 -1.6 -9.2 phosphoadenosine phosphosulfate reductase compare
PS417_12060 -1.6 -7.8 xylitol ABC transporter, permease component (from data) compare
PS417_22385 -1.6 -10.4 quinolinate synthase A compare
PS417_22520 -1.6 -3.5 histidine kinase compare
PS417_19335 -1.6 -4.0 isochorismatase compare
PS417_12055 -1.6 -6.3 xylitol ABC transporter, substrate-binding component (from data) compare
PS417_22620 -1.6 -6.0 pyruvate kinase compare
PS417_21655 -1.5 -1.9 aspartate kinase compare
PS417_08130 -1.5 -3.0 aspartate aminotransferase compare
PS417_07170 -1.5 -3.7 hypothetical protein compare
PS417_26990 -1.5 -2.0 RNA pyrophosphohydrolase compare
PS417_21705 -1.5 -5.8 arginine N-succinyltransferase compare
PS417_08245 -1.4 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08225 -1.4 -5.8 acetolactate synthase compare
PS417_12310 -1.4 -6.6 methionine synthase compare
PS417_03925 -1.4 -7.4 nicotinate-nucleotide pyrophosphorylase compare
PS417_24800 -1.4 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_12710 -1.3 -3.6 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_09695 -1.3 -2.5 hydrolase compare
PS417_12725 -1.3 -5.9 AraC family transcriptional regulator conserved
PS417_08200 -1.3 -3.3 hypothetical protein compare
PS417_28080 -1.3 -9.0 phosphate ABC transporter permease compare
PS417_08205 -1.3 -3.9 acetyltransferase compare
PS417_26510 -1.3 -6.3 5,10-methylenetetrahydrofolate reductase compare
PS417_28070 -1.3 -5.3 phosphate ABC transporter ATP-binding protein compare
PS417_23900 -1.3 -7.3 poly(A) polymerase compare
PS417_27610 -1.2 -4.3 hypothetical protein compare
PS417_08685 -1.2 -2.3 flagellar hook-length control protein FliK compare
PS417_08195 -1.2 -7.3 hypothetical protein compare
PS417_13165 -1.2 -1.5 peroxidase compare
PS417_09715 -1.2 -5.4 hypothetical protein compare
PS417_22445 -1.2 -4.0 ATP-dependent DNA helicase RuvB compare
PS417_05165 -1.2 -3.4 cytosol aminopeptidase compare
PS417_11930 -1.2 -7.1 hypothetical protein compare
PS417_12715 -1.2 -6.4 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) compare
PS417_16990 -1.2 -6.2 acyl-CoA dehydrogenase compare
PS417_04180 -1.2 -4.6 GntR family transcriptional regulator compare
PS417_23725 -1.2 -3.1 methylmalonate-semialdehyde dehydrogenase compare
PS417_27035 -1.1 -4.6 FAD-linked oxidase compare
PS417_12355 -1.1 -2.5 magnesium chelatase compare
PS417_20635 -1.1 -1.2 ABC transporter ATP-binding protein compare
PS417_14980 -1.1 -1.5 universal stress protein UspA compare
PS417_09710 -1.1 -2.9 dehydrogenase compare
PS417_07165 -1.1 -2.8 dihydrodipicolinate synthase compare
PS417_25650 -1.1 -4.0 anhydro-N-acetylmuramic acid kinase compare
PS417_27605 -1.1 -4.6 hypothetical protein compare
PS417_11520 -1.1 -4.3 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_02225 -1.1 -1.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07620 -1.0 -2.2 beta-hexosaminidase compare
PS417_08230 -1.0 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20665 -1.0 -4.5 hypothetical protein compare
PS417_28075 -1.0 -3.7 phosphate ABC transporter permease compare
PS417_20340 -1.0 -1.4 hypothetical protein compare
PS417_27305 -1.0 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_11485 -1.0 -2.2 AraC family transcriptional regulator compare
PS417_24810 -1.0 -5.4 aldehyde dehydrogenase compare
PS417_04270 -1.0 -6.1 ribonuclease G compare
PS417_08580 -1.0 -5.3 histidine kinase compare
PS417_22815 -1.0 -5.0 permease compare
PS417_15540 -1.0 -1.3 NUDIX hydrolase compare
PS417_06685 -1.0 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_17945 -0.9 -1.0 hypothetical protein compare
PS417_05905 -0.9 -2.0 hypothetical protein compare
PS417_01915 -0.9 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_16715 -0.9 -1.8 DoxX family protein compare
PS417_11925 -0.9 -1.8 hypothetical protein compare
PS417_20535 -0.9 -4.2 peptidylprolyl isomerase compare
PS417_21700 -0.9 -4.1 arginine N-succinyltransferase compare
PS417_12700 -0.9 -2.9 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_24765 -0.9 -2.3 membrane protein compare
PS417_18235 -0.9 -2.1 nitrile hydratase compare
PS417_01095 -0.9 -1.9 amino acid ABC transporter ATP-binding protein compare
PS417_12045 -0.9 -1.9 iditol 2-dehydrogenase compare
PS417_28085 -0.9 -5.6 phosphate-binding protein compare
PS417_03705 -0.9 -2.4 2-alkenal reductase compare
PS417_18755 -0.9 -1.9 CrtK compare
PS417_08990 -0.9 -2.2 ABC transporter substrate-binding protein compare
PS417_27105 -0.9 -3.5 spermidine/putrescine ABC transporter permease compare
PS417_07120 -0.9 -3.6 RNA polymerase sigma-H factor compare
PS417_03260 -0.9 -1.6 5S ribosomal RNA compare
PS417_27110 -0.8 -3.9 spermidine/putrescine ABC transporter permease compare
PS417_06645 -0.8 -5.3 RNA polymerase-associated protein RapA compare
PS417_21630 -0.8 -2.4 magnesium transporter compare
PS417_28230 -0.8 -2.5 transcriptional regulator compare
PS417_09915 -0.8 -1.5 hypothetical protein compare
PS417_09720 -0.8 -1.5 methyltransferase compare
PS417_24265 -0.8 -4.1 ABC transporter ATP-binding protein compare
PS417_17930 -0.8 -1.3 aldehyde dehydrogenase compare
PS417_23615 -0.8 -2.2 sulfate transporter compare
PS417_28510 -0.8 -3.9 chromosome partitioning protein compare
PS417_00385 -0.8 -1.0 Fur family transcriptional regulator compare
PS417_16490 -0.8 -1.2 cell division protein FtsK compare
PS417_16570 -0.8 -4.4 isocitrate lyase compare
PS417_27340 -0.8 -2.7 NADPH:quinone oxidoreductase compare
PS417_25790 -0.8 -2.3 aminoglycoside phosphotransferase compare
PS417_24840 -0.8 -1.6 hypothetical protein compare
PS417_10245 -0.8 -1.2 hypothetical protein compare
PS417_26725 -0.8 -2.8 hypothetical protein compare
PS417_09470 -0.7 -0.6 hypothetical protein compare
PS417_06710 -0.7 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_02805 -0.7 -1.3 urease subunit gamma compare
PS417_10405 -0.7 -0.9 filamentous hemagglutinin compare
PS417_13255 -0.7 -1.0 ABC transporter compare
PS417_27065 -0.7 -2.0 hypothetical protein compare
PS417_05815 -0.7 -2.9 recombinase RecA compare
PS417_23380 -0.7 -1.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_24100 -0.7 -3.9 transcriptional regulator PdhR compare
PS417_14295 -0.7 -2.1 AraC family transcriptional regulator compare
PS417_24805 -0.7 -4.3 Fis family transcriptional regulator compare
PS417_08025 -0.7 -1.2 acetylornithine aminotransferase compare
PS417_08540 -0.7 -2.2 RNA helicase compare
PS417_07195 -0.7 -1.7 hypothetical protein compare
PS417_08320 -0.7 -2.1 metal-chelation protein CHAD compare
PS417_17860 -0.7 -2.6 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_09325 -0.7 -2.6 peptidase S41 compare
PS417_09700 -0.7 -2.1 transaldolase compare
PS417_12445 -0.7 -3.4 6-phosphogluconate dehydrogenase compare
PS417_21830 -0.7 -1.9 TetR family transcriptional regulator compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Xylitol in Pseudomonas simiae WCS417

For carbon source Xylitol across organisms