Experiment set2IT064 for Escherichia coli BW25113
LB with Carbenicillin disodium salt 0.004 mg/ml
Group: stressMedia: LB + Carbenicillin disodium salt (0.004 mg/ml)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Kelly on 6/30/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 959 D1,D2
Specific Phenotypes
For 5 genes in this experiment
For stress Carbenicillin disodium salt in Escherichia coli BW25113
For stress Carbenicillin disodium salt across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Multidrug Resistance Efflux Pumps | 1 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| S-methyl-5'-thioadenosine degradation II | 1 | 1 | 1 |
| adenine and adenosine salvage III | 4 | 4 | 3 |
| adenine and adenosine salvage V | 3 | 3 | 2 |
| purine ribonucleosides degradation | 6 | 6 | 3 |
| adenine and adenosine salvage I | 2 | 2 | 1 |
| adenosine nucleotides degradation II | 5 | 5 | 2 |
| peptidoglycan recycling II | 10 | 7 | 2 |
| purine nucleotides degradation II (aerobic) | 11 | 11 | 2 |
| peptidoglycan recycling I | 14 | 14 | 2 |
| nucleoside and nucleotide degradation (archaea) | 10 | 4 | 1 |
| L-methionine salvage cycle III | 11 | 5 | 1 |
| superpathway of purine nucleotide salvage | 14 | 13 | 1 |