Experiment set2IT064 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with D-Cycloserine 0.016 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3142 +1.9 2.8 hypothetical protein compare
Echvi_0096 +1.4 3.0 Predicted pyrophosphatase compare
Echvi_2937 +1.0 3.4 Uncharacterized conserved protein compare
Echvi_3872 +1.0 2.0 SnoaL-like polyketide cyclase. compare
Echvi_0650 +1.0 3.0 thioredoxin compare
Echvi_0128 +1.0 2.2 hypothetical protein compare
Echvi_0275 +1.0 2.2 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Echvi_4375 +1.0 1.6 hypothetical protein compare
Echvi_3998 +0.9 1.7 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Echvi_3934 +0.9 2.4 hypothetical protein compare
Echvi_3444 +0.9 1.8 tRNA compare
Echvi_1492 +0.9 2.4 hypothetical protein compare
Echvi_1015 +0.9 3.0 Retron-type reverse transcriptase compare
Echvi_0641 +0.9 1.1 Transposase and inactivated derivatives compare
Echvi_3896 +0.8 2.8 PAP2 superfamily. compare
Echvi_2199 +0.8 1.3 hypothetical protein compare
Echvi_4644 +0.8 2.7 S23 ribosomal protein. compare
Echvi_2775 +0.8 5.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_1850 +0.8 5.4 Bacterial SH3 domain. compare
Echvi_0299 +0.8 6.4 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_0169 +0.8 6.4 hypothetical protein compare
Echvi_0090 +0.8 1.8 Iron-sulfur cluster assembly accessory protein compare
Echvi_2253 +0.8 5.3 hypothetical protein compare
Echvi_1280 +0.8 1.9 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_2249 +0.7 1.3 hypothetical protein compare
Echvi_0621 +0.7 6.8 gliding motility-associated protein GldM compare
Echvi_0298 +0.7 6.4 gliding-associated putative ABC transporter substrate-binding component GldG compare
Echvi_4025 +0.7 1.6 hypothetical protein compare
Echvi_1224 +0.7 5.1 gliding motility-associated lipoprotein GldD compare
Echvi_1603 +0.7 1.6 hypothetical protein compare
Echvi_0622 +0.7 4.2 gliding motility-associated protein GldL compare
Echvi_0852 +0.7 6.1 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_0482 +0.7 2.1 Uncharacterized protein conserved in bacteria compare
Echvi_0620 +0.7 5.8 gliding motility associated protien GldN compare
Echvi_1319 +0.7 6.0 gliding motility-associated lipoprotein GldB compare
Echvi_1662 +0.7 1.7 hypothetical protein compare
Echvi_1950 +0.7 1.5 hypothetical protein compare
Echvi_2679 +0.6 1.1 hypothetical protein compare
Echvi_2586 +0.6 1.0 hypothetical protein compare
Echvi_2527 +0.6 2.3 Protein of unknown function (DUF3276). compare
Echvi_2824 +0.6 5.5 hypothetical protein compare
Echvi_4589 +0.6 2.6 MoxR-like ATPases compare
Echvi_1442 +0.6 2.3 hypothetical protein compare
Echvi_1638 +0.6 1.3 hypothetical protein compare
Echvi_0300 +0.6 4.4 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_1822 +0.6 1.0 ubiquinone/menaquinone biosynthesis methyltransferases compare
Echvi_3381 +0.6 5.7 Pregnancy-associated plasma protein-A. compare
Echvi_2554 +0.6 1.5 hypothetical protein compare
Echvi_1171 +0.6 2.1 Uncharacterized conserved protein compare
Echvi_3674 +0.6 2.5 Putative transposase. compare
Echvi_0674 +0.6 5.1 hypothetical protein compare
Echvi_0623 +0.6 5.4 gliding motility-associated lipoprotein GldK compare
Echvi_4545 +0.6 2.8 hypothetical protein compare
Echvi_1900 +0.6 2.0 nitrite reductase [NAD(P)H], small subunit compare
Echvi_4083 +0.6 5.6 hypothetical protein compare
Echvi_0613 +0.6 2.3 hypothetical protein compare
Echvi_1821 +0.6 3.8 hypothetical protein compare
Echvi_3292 +0.6 0.7 hypothetical protein compare
Echvi_4334 +0.6 1.8 hypothetical protein compare
Echvi_1607 +0.6 1.1 Acylphosphatases compare
Echvi_0655 +0.5 4.1 hypothetical protein compare
Echvi_2829 +0.5 5.1 hypothetical protein compare
Echvi_3300 +0.5 2.1 hypothetical protein compare
Echvi_3456 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_0652 +0.5 3.0 Outer membrane protein compare
Echvi_3193 +0.5 1.3 hypothetical protein compare
Echvi_1297 +0.5 2.1 hypothetical protein compare
Echvi_3332 +0.5 2.9 hypothetical protein compare
Echvi_0733 +0.5 4.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_2377 +0.5 2.2 hypothetical protein compare
Echvi_0617 +0.5 4.7 hypothetical protein compare
Echvi_1088 +0.5 2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_4249 +0.5 1.6 hypothetical protein compare
Echvi_1695 +0.5 3.1 Predicted Na+-dependent transporter compare
Echvi_1238 +0.5 2.4 inosine/xanthosine triphosphatase compare
Echvi_1311 +0.5 4.4 gliding motility-associated lipoprotein GldJ compare
Echvi_3918 +0.5 0.7 Histone H1-like protein Hc1. compare
Echvi_0260 +0.5 1.6 Protein of unknown function (DUF3467). compare
Echvi_1888 +0.5 4.3 hypothetical protein compare
Echvi_1042 +0.5 1.8 hypothetical protein compare
Echvi_4305 +0.5 1.6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_1223 +0.5 3.0 Uncharacterized protein conserved in bacteria compare
Echvi_0624 +0.5 4.0 Bacteroidetes-specific putative membrane protein compare
Echvi_3430 +0.5 0.8 hypothetical protein compare
Echvi_4184 +0.5 2.1 Predicted transcriptional regulators compare
Echvi_0870 +0.5 2.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase compare
Echvi_2949 +0.5 2.6 NADPH:quinone reductase and related Zn-dependent oxidoreductases compare
Echvi_1078 +0.5 1.6 Protein-L-isoaspartate carboxylmethyltransferase compare
Echvi_4209 +0.5 2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Echvi_0362 +0.5 2.0 hypothetical protein compare
Echvi_0543 +0.5 2.0 hypothetical protein compare
Echvi_0438 +0.5 1.6 hypothetical protein compare
Echvi_0333 +0.5 4.0 Bacteroidetes-specific putative membrane protein compare
Echvi_2793 +0.5 4.4 hypothetical protein compare
Echvi_1800 +0.5 1.7 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family compare
Echvi_1502 +0.5 1.5 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) compare
Echvi_1999 +0.5 0.8 hypothetical protein compare
Echvi_0896 +0.5 2.0 Nodulation protein S (NodS). compare
Echvi_0199 +0.5 3.7 hypothetical protein compare
Echvi_3046 +0.5 2.3 hypothetical protein compare
Echvi_2709 +0.4 1.4 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_2627 +0.4 2.0 hypothetical protein compare
Echvi_0215 +0.4 1.8 phosphomethylpyrimidine kinase compare
Echvi_4411 +0.4 2.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_3576 +0.4 3.9 Subtilisin-like serine proteases compare
Echvi_3229 +0.4 1.4 hypothetical protein compare
Echvi_4562 +0.4 1.3 hypothetical protein compare
Echvi_3379 +0.4 3.6 hypothetical protein compare
Echvi_0129 +0.4 2.0 hypothetical protein compare
Echvi_0860 +0.4 2.4 hypothetical protein compare
Echvi_1108 +0.4 3.4 hypothetical protein compare
Echvi_3401 +0.4 1.2 hypothetical protein compare
Echvi_2940 +0.4 1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_0942 +0.4 2.9 Acetyltransferase (isoleucine patch superfamily) compare
Echvi_2633 +0.4 2.6 gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) compare
Echvi_4020 +0.4 1.9 hypothetical protein compare
Echvi_4097 +0.4 2.2 hypothetical protein compare
Echvi_0346 +0.4 1.7 Predicted acyltransferase compare
Echvi_3859 +0.4 2.1 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_0645 +0.4 1.9 Uncharacterized protein conserved in bacteria compare
Echvi_0597 +0.4 2.3 Uracil phosphoribosyltransferase compare
Echvi_3824 +0.4 1.1 hypothetical protein compare
Echvi_2838 +0.4 1.7 Cytosine/adenosine deaminases compare
Echvi_3973 +0.4 1.5 hypothetical protein compare
Echvi_1719 +0.4 0.7 hypothetical protein compare
Echvi_3001 +0.4 1.5 Predicted membrane protein compare
Echvi_1064 +0.4 1.9 Predicted endonuclease containing a URI domain compare
Echvi_2519 +0.4 2.0 hypothetical protein compare
Echvi_1489 +0.4 2.5 UDP-N-acetylglucosamine 2-epimerase compare
Echvi_1022 +0.4 2.5 ABC-type spermidine/putrescine transport systems, ATPase components compare
Echvi_1828 +0.4 2.2 Fructosamine-3-kinase compare
Echvi_4079 +0.4 2.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Echvi_3704 +0.4 2.2 hypothetical protein compare
Echvi_3781 +0.4 2.0 Fe2+-dicitrate sensor, membrane component compare
Echvi_3120 +0.4 1.9 hypothetical protein compare
Echvi_2244 +0.4 1.0 hypothetical protein compare
Echvi_0334 +0.4 3.5 hypothetical protein compare
Echvi_1303 +0.4 2.6 hypothetical protein compare
Echvi_4464 +0.4 2.4 hypothetical protein compare
Echvi_3814 +0.4 1.5 Uncharacterized conserved protein compare
Echvi_3320 +0.4 2.1 GIY-YIG catalytic domain. compare
Echvi_3053 +0.4 1.6 Membrane transporters of cations and cationic drugs compare
Echvi_3914 +0.4 3.3 Transcriptional regulators compare
Echvi_2201 +0.4 1.1 hypothetical protein compare
Echvi_0889 +0.4 2.4 Uncharacterized iron-regulated protein compare
Echvi_1816 +0.4 1.7 Cytidine deaminase compare
Echvi_0127 +0.4 0.6 hypothetical protein compare
Echvi_2355 +0.4 1.3 Predicted membrane protein compare
Echvi_0745 +0.4 2.9 Predicted aminopeptidases compare
Echvi_4660 +0.4 2.1 cystathionine beta-synthase compare
Echvi_0715 +0.4 0.9 hypothetical protein compare
Echvi_4327 +0.4 1.5 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_1387 +0.4 2.5 Protein of unknown function (DUF2726). compare
Echvi_0037 +0.4 1.8 Response regulator of the LytR/AlgR family compare
Echvi_2350 +0.4 1.8 dinuclear metal center protein, YbgI/SA1388 family compare
Echvi_2864 +0.4 1.6 Predicted acetyltransferase compare
Echvi_1348 +0.4 1.7 phage/plasmid-related protein TIGR03299 compare
Echvi_3983 +0.4 2.0 Transcriptional regulator/sugar kinase compare
Echvi_0106 +0.4 1.5 hypothetical protein compare
Echvi_0086 +0.4 2.2 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_0010 +0.4 2.1 hypothetical protein compare
Echvi_3703 +0.4 1.0 hypothetical protein compare
Echvi_3089 +0.4 2.2 Endopolygalacturonase compare
Echvi_1840 +0.4 1.5 Domain of Unknown Function (DUF1080). compare
Echvi_3519 +0.4 1.3 hypothetical protein compare
Echvi_0948 +0.4 3.1 hypothetical protein compare
Echvi_4276 +0.3 2.0 hypothetical protein compare
Echvi_4296 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
Echvi_0475 +0.3 1.0 Uncharacterized protein conserved in bacteria compare
Echvi_2154 +0.3 2.6 Response regulator of the LytR/AlgR family compare
Echvi_0173 +0.3 1.4 hypothetical protein compare
Echvi_1538 +0.3 2.7 hypothetical protein compare
Echvi_2720 +0.3 1.6 hypothetical protein compare
Echvi_0536 +0.3 1.3 hypothetical protein compare
Echvi_1155 +0.3 1.9 hypothetical protein compare
Echvi_3200 +0.3 1.8 Site-specific recombinase XerD compare
Echvi_2343 +0.3 1.9 Uncharacterized protein conserved in cyanobacteria compare
Echvi_2701 +0.3 2.1 Pectate lyase compare
Echvi_4342 +0.3 3.0 transporter, SSS family compare
Echvi_0626 +0.3 2.4 hypothetical protein compare
Echvi_4190 +0.3 1.7 hypothetical protein compare
Echvi_2297 +0.3 0.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Echvi_4169 +0.3 1.1 Molybdopterin converting factor, small subunit compare
Echvi_0633 +0.3 2.2 hypothetical protein compare
Echvi_0935 +0.3 1.5 bacillithiol system protein YtxJ compare
Echvi_2560 +0.3 1.4 PAS domain S-box compare
Echvi_0557 +0.3 1.6 Molecular chaperone (small heat shock protein) compare
Echvi_4022 +0.3 0.9 hypothetical protein compare
Echvi_4639 +0.3 3.0 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_4459 +0.3 1.0 Protein of unknown function (DUF3703). compare
Echvi_3036 +0.3 2.2 Response regulator of the LytR/AlgR family compare
Echvi_1264 +0.3 0.6 hypothetical protein compare
Echvi_3197 +0.3 0.6 hypothetical protein compare
Echvi_3136 +0.3 2.1 Site-specific recombinases, DNA invertase Pin homologs compare
Echvi_2082 +0.3 1.5 Smr domain. compare
Echvi_3209 +0.3 1.8 Predicted membrane protein compare
Echvi_2157 +0.3 0.9 hypothetical protein compare
Echvi_2520 +0.3 2.1 Predicted unusual protein kinase compare
Echvi_4235 +0.3 1.5 Glycosyltransferase compare
Echvi_3564 +0.3 0.9 Uncharacterized enzyme of thiazole biosynthesis compare


Specific Phenotypes

For 2 genes in this experiment

For stress D-Cycloserine in Echinicola vietnamensis KMM 6221, DSM 17526

For stress D-Cycloserine across organisms