Experiment set2IT063 for Pseudomonas simiae WCS417

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.1 -4.9 isopropylmalate isomerase compare
PS417_23805 -6.9 -4.8 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -6.7 -4.6 3-isopropylmalate dehydratase compare
PS417_18560 -6.4 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02005 -6.2 -8.5 glutamate synthase compare
PS417_01855 -6.1 -4.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -6.0 -8.3 anthranilate synthase component II compare
PS417_26740 -5.9 -8.1 homoserine acetyltransferase compare
PS417_01575 -5.5 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -5.1 -5.0 3-phosphoglycerate dehydrogenase compare
PS417_18585 -5.1 -6.0 3-isopropylmalate dehydrogenase compare
PS417_01565 -5.0 -6.7 imidazole glycerol phosphate synthase compare
PS417_01850 -4.8 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20125 -4.8 -5.6 phosphoribosylglycinamide formyltransferase compare
PS417_23800 -4.7 -11.9 ketol-acid reductoisomerase compare
PS417_04420 -4.6 -10.7 histidinol dehydrogenase compare
PS417_02415 -4.6 -6.3 phosphoserine phosphatase compare
PS417_24745 -4.5 -5.4 gamma-glutamyl phosphate reductase compare
PS417_25725 -4.5 -16.5 anthranilate synthase component I compare
PS417_27795 -4.4 -2.2 orotate phosphoribosyltransferase compare
PS417_04415 -4.4 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23810 -4.4 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_02000 -4.3 -11.8 glutamate synthase compare
PS417_06375 -4.3 -2.1 deoxycytidine triphosphate deaminase compare
PS417_23545 -4.1 -4.0 gamma-glutamyl kinase compare
PS417_00180 -4.1 -2.8 tryptophan synthase subunit alpha compare
PS417_02510 -4.1 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25715 -4.1 -6.2 anthranilate phosphoribosyltransferase compare
PS417_00185 -4.0 -5.0 tryptophan synthase subunit beta compare
PS417_07640 -4.0 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05595 -4.0 -7.9 ornithine carbamoyltransferase compare
PS417_27835 -4.0 -9.5 endoribonuclease compare
PS417_18530 -3.9 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_16465 -3.8 -10.1 sirohydrochlorin ferrochelatase compare
PS417_26745 -3.8 -4.8 methionine biosynthesis protein MetW compare
PS417_20985 -3.7 -4.3 porin compare
PS417_25710 -3.6 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_26995 -3.6 -9.5 phosphoserine phosphatase compare
PS417_27195 -3.5 -2.2 N-acetylglutamate synthase compare
PS417_08230 -3.4 -3.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23995 -3.3 -1.6 preprotein translocase subunit SecG compare
PS417_20160 -3.3 -4.7 cysteine synthase compare
PS417_01580 -3.2 -1.9 imidazole glycerol phosphate synthase compare
PS417_26890 -2.9 -5.2 dihydroxy-acid dehydratase compare
PS417_01570 -2.9 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_12290 -2.8 -5.8 sulfite reductase compare
PS417_26730 -2.8 -1.9 pyrroline-5-carboxylate reductase compare
PS417_23110 -2.7 -4.8 2-isopropylmalate synthase compare
PS417_23770 -2.4 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.3 -3.4 ATP-binding protein compare
PS417_12855 -2.3 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03100 -2.1 -1.7 pilus assembly protein compare
PS417_08125 -1.9 -1.6 prephenate dehydratase compare
PS417_08245 -1.6 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01560 -1.6 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_01290 -1.5 -2.1 ADP-ribose diphosphatase compare
PS417_01605 -1.5 -1.8 phosphoglycerate mutase compare
PS417_08205 -1.4 -4.0 acetyltransferase compare
PS417_24835 -1.4 -5.1 hypothetical protein compare
PS417_18690 -1.4 -4.0 aromatic amino acid aminotransferase compare
PS417_08200 -1.4 -3.4 hypothetical protein compare
PS417_08225 -1.4 -3.7 acetolactate synthase compare
PS417_24840 -1.3 -2.1 hypothetical protein compare
PS417_21500 -1.3 -4.5 C4 dicarboxylate transporter DctA (from data) conserved
PS417_22520 -1.2 -2.3 histidine kinase compare
PS417_04220 -1.2 -1.6 4-carboxymuconolactone decarboxylase compare
PS417_01210 -1.2 -6.7 hypothetical protein compare
PS417_04585 -1.1 -1.3 hypothetical protein compare
PS417_09730 -1.1 -2.4 adenylylsulfate kinase compare
PS417_19620 -1.1 -1.9 hypothetical protein compare
PS417_10010 -1.1 -3.1 Replication protein P compare
PS417_19095 -1.1 -1.5 hypothetical protein compare
PS417_20610 -1.1 -1.6 hypothetical protein compare
PS417_06200 -1.1 -5.4 protein-PII uridylyltransferase compare
PS417_26175 -1.1 -1.1 sarcosine oxidase subunit gamma compare
PS417_20030 -1.1 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_18425 -1.1 -1.6 sporulation protein compare
PS417_12355 -1.1 -2.2 magnesium chelatase compare
PS417_14075 -1.1 -2.3 hypothetical protein compare
PS417_19600 -1.1 -1.6 exonuclease compare
PS417_01305 -1.0 -4.2 Fis family transcriptional regulator conserved
PS417_22570 -1.0 -1.2 H-NS histone compare
PS417_10245 -1.0 -1.3 hypothetical protein compare
PS417_06945 -1.0 -1.4 membrane protein compare
PS417_20635 -1.0 -1.1 ABC transporter ATP-binding protein compare
PS417_27005 -1.0 -1.2 membrane protein compare
PS417_21125 -1.0 -3.7 phosphoadenosine phosphosulfate reductase compare
PS417_17945 -0.9 -1.0 hypothetical protein compare
PS417_26605 -0.9 -1.3 malonate decarboxylase subunit beta compare
PS417_01640 -0.9 -3.6 histidine kinase compare
PS417_07170 -0.9 -2.5 hypothetical protein compare
PS417_01635 -0.9 -4.9 nitrogen regulation protein NR(I) compare
PS417_15285 -0.9 -1.0 type VI secretion protein compare
PS417_01995 -0.9 -1.3 hypothetical protein compare
PS417_14295 -0.9 -2.4 AraC family transcriptional regulator compare
PS417_08130 -0.9 -1.8 aspartate aminotransferase compare
PS417_19425 -0.9 -1.1 allantoicase compare
PS417_26645 -0.9 -2.3 chemotaxis protein compare
PS417_16045 -0.9 -2.4 acyl-CoA dehydrogenase compare
PS417_16555 -0.9 -1.6 cupin compare
PS417_20665 -0.9 -3.9 hypothetical protein compare
PS417_04365 -0.8 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02385 -0.8 -1.5 esterase compare
PS417_18590 -0.8 -1.6 SAM-dependent methyltransferase compare
PS417_21700 -0.8 -1.9 arginine N-succinyltransferase compare
PS417_27035 -0.8 -2.3 FAD-linked oxidase compare
PS417_06600 -0.8 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_22640 -0.8 -2.6 cytochrome C biogenesis protein CcmE compare
PS417_05820 -0.8 -2.4 recombinase RecX compare
PS417_21210 -0.8 -1.7 amidotransferase compare
PS417_19805 -0.8 -3.3 flagellar M-ring protein FliF compare
PS417_15100 -0.8 -2.0 BatB protein compare
PS417_26805 -0.8 -1.0 cell division protein FtsE compare
PS417_01145 -0.8 -1.0 taurine transporter ATP-binding subunit compare
PS417_08195 -0.8 -4.1 hypothetical protein compare
PS417_02365 -0.8 -1.9 hypothetical protein compare
PS417_13175 -0.8 -1.6 iron transporter compare
PS417_05130 -0.8 -2.2 glutaredoxin compare
PS417_18435 -0.8 -2.0 hypothetical protein compare
PS417_11705 -0.8 -4.2 cyclic peptide transporter compare
PS417_01915 -0.8 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21705 -0.7 -2.4 arginine N-succinyltransferase compare
PS417_15135 -0.7 -1.3 hypothetical protein compare
PS417_18885 -0.7 -1.9 GntR family transcriptional regulator compare
PS417_04180 -0.7 -1.7 GntR family transcriptional regulator compare
PS417_27925 -0.7 -2.9 hypothetical protein compare
PS417_14400 -0.7 -1.6 hypothetical protein compare
PS417_05695 -0.7 -2.7 transcriptional regulator compare
PS417_13730 -0.7 -1.7 hypothetical protein compare
PS417_17795 -0.7 -1.4 ABC transporter permease compare
PS417_00900 -0.7 -1.7 4-aminobutyrate aminotransferase compare
PS417_03915 -0.7 -2.0 tRNA-Thr compare
PS417_06045 -0.7 -1.5 membrane protein compare
PS417_01310 -0.7 -2.4 ATPase compare
PS417_22195 -0.7 -3.2 peptidase compare
PS417_14515 -0.7 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_26850 -0.7 -0.8 twin-arginine translocation pathway signal protein compare
PS417_00945 -0.7 -1.8 sulfate ABC transporter ATP-binding protein compare
PS417_11770 -0.7 -1.5 pyruvate dehydrogenase compare
PS417_13445 -0.7 -1.6 D-aminopeptidase compare
PS417_20365 -0.7 -1.9 Cro/Cl family transcriptional regulator compare
PS417_16715 -0.7 -1.4 DoxX family protein compare
PS417_18025 -0.7 -1.8 cytochrome C compare
PS417_20185 -0.7 -2.5 ketosteroid isomerase compare
PS417_27245 -0.7 -2.7 aminotransferase DegT compare
PS417_17545 -0.7 -1.9 2-oxoisovalerate dehydrogenase compare
PS417_23380 -0.7 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_09915 -0.7 -1.4 hypothetical protein compare
PS417_05455 -0.7 -3.0 XRE family transcriptional regulator compare
PS417_16195 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_03560 -0.7 -1.1 GTP-binding protein compare
PS417_09420 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_16665 -0.7 -1.5 hypothetical protein compare
PS417_00485 -0.7 -1.5 ABC transporter permease compare
PS417_25825 -0.7 -1.2 sulfurtransferase compare
PS417_22300 -0.7 -1.2 LTXXQ domain protein compare
PS417_02720 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_08540 -0.6 -2.1 RNA helicase compare
PS417_05010 -0.6 -0.8 IclR family transcriptional regulator compare
PS417_07440 -0.6 -2.1 cyclic nucleotide-binding protein compare
PS417_14910 -0.6 -3.0 C4-dicarboxylate ABC transporter compare
PS417_23390 -0.6 -3.4 ubiquinol oxidase subunit II compare
PS417_17035 -0.6 -1.0 Cro/Cl family transcriptional regulator compare
PS417_00190 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_14840 -0.6 -2.3 abortive phage infection protein compare
PS417_09300 -0.6 -1.4 peptidylprolyl isomerase compare
PS417_08155 -0.6 -1.4 integration host factor subunit beta compare
PS417_10425 -0.6 -1.3 hypothetical protein compare
PS417_17855 -0.6 -2.1 major facilitator transporter compare
PS417_19785 -0.6 -1.6 flagellar biogenesis protein compare
PS417_08685 -0.6 -1.1 flagellar hook-length control protein FliK compare
PS417_07010 -0.6 -1.3 pseudouridine synthase compare
PS417_21690 -0.6 -2.8 N-succinylarginine dihydrolase compare
PS417_17120 -0.6 -1.7 protein kinase compare
PS417_19790 -0.6 -1.3 ATP synthase compare
PS417_26695 -0.6 -1.0 uracil phosphoribosyltransferase compare
PS417_10955 -0.6 -1.8 porin compare
PS417_23385 -0.6 -3.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_01045 -0.6 -1.8 RND transporter compare
PS417_18225 -0.6 -2.1 phenol degradation protein meta compare
PS417_10920 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_17930 -0.6 -1.2 aldehyde dehydrogenase compare
PS417_11925 -0.6 -0.9 hypothetical protein compare
PS417_13255 -0.6 -1.3 ABC transporter compare
PS417_19400 -0.6 -2.0 amino acid transporter LysE compare
PS417_15370 -0.6 -1.5 kinase compare
PS417_07595 -0.6 -1.3 PasA protein compare
PS417_27865 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_00295 -0.6 -2.6 hypothetical protein compare
PS417_11440 -0.6 -1.0 hypothetical protein compare
PS417_28325 -0.6 -1.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_12190 -0.6 -2.1 microcin ABC transporter ATP-binding protein compare
PS417_07455 -0.6 -0.9 glutamine amidotransferase compare
PS417_11865 -0.6 -1.5 xylose isomerase compare
PS417_05325 -0.6 -1.5 fimbrial protein compare
PS417_15480 -0.6 -1.0 ABC transporter substrate-binding protein compare
PS417_04195 -0.6 -2.2 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PS417_16005 -0.6 -1.4 ATPase compare
PS417_04705 -0.6 -0.9 hypothetical protein compare
PS417_05200 -0.6 -1.9 DNA recombination protein RecO compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms