Experiment set2IT063 for Agrobacterium fabrum C58

Compare to:

D-Glucuronic acid gamma lactone carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -7.8 -5.4 phosphoribosylformylglycinamidine synthetase II compare
Atu2709 -7.7 -10.5 3-isopropylmalate dehydratase, large subunit compare
Atu1845 -7.5 -5.2 phosphoribosylformylglycinamidine synthase I compare
Atu1687 -7.3 -10.0 anthranilate phosphoribosyltransferase compare
Atu3754 -7.3 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2264 -7.1 -9.7 2-isopropylmalate synthase compare
Atu0099 -7.1 -9.7 prephenate dehydratase compare
Atu2289 -6.9 -16.0 anthranilate synthase component I and II compare
Atu2036 -6.9 -11.5 acetolactate synthase III, large subunit compare
Atu1205 -6.9 -11.5 threonine dehydratase compare
Atu3482 -6.9 -9.4 pantoate--beta-alanine ligase compare
Atu0432 -6.8 -8.1 O-succinylhomoserine sulfhydrylase compare
Atu2791 -6.8 -6.6 3-isopropylmalate dehydrogenase compare
Atu3971 -6.8 -17.5 dihydroxy-acid dehydratase compare
Atu3706 -6.7 -6.6 D-3-phosphoglycerate dehydrogenase compare
Atu0038 -6.7 -6.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -6.6 -6.4 orotidine 5 compare
Atu3885 -6.6 -6.4 inositol monophosphatase compare
Atu1075 -6.5 -6.4 amidophosphoribosyltransferase compare
Atu2650 -6.5 -12.5 glycerol-3-phosphate dehydrogenase compare
Atu3740 -6.5 -10.8 fructose bisphosphate aldolase compare
Atu0679 -6.5 -6.3 ATP phosphoribosyltransferase compare
Atu1750 -6.5 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu3973 -6.4 -8.8 hypothetical protein compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu1588 -6.3 -8.7 homoserine dehydrogenase compare
Atu2747 -6.3 -12.9 hypothetical protein compare
Atu0400 -6.2 -6.0 orotate phosphoribosyltransferase compare
Atu1308 -6.1 -8.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu1307 -6.1 -7.2 dihydroorotase compare
Atu1140 -6.1 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0035 -6.0 -12.2 phosphoenolpyruvate carboxykinase compare
Atu0399 -6.0 -5.8 dihydroorotase compare
Atu4505 -5.9 -12.1 LacI family transcriptional regulator compare
Atu1620 -5.9 -13.2 triosephosphate isomerase compare
Atu1688 -5.8 -5.7 indole-3-glycerol-phosphate synthase compare
Atu2718 -5.8 -8.0 homoserine O-succinyltransferase compare
Atu0678 -5.8 -5.6 histidyl-tRNA synthetase compare
Atu0537 -5.7 -5.6 histidinol dehydrogenase compare
Atu3755 -5.7 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3483 -5.6 -8.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0486 -5.6 -7.6 dihydroorotate dehydrogenase compare
Atu2015 -5.5 -14.2 aminotransferase compare
Atu1141 -5.4 -9.8 Phosphoribosylglycinamide synthetase compare
Atu0647 -5.4 -5.3 phosphoribosylamine--glycine ligase compare
Atu3968 -5.4 -15.9 sugar ABC transporter permease compare
Atu3972 -5.2 -7.0 hypothetical protein compare
Atu2790 -5.2 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu1686 -5.1 -19.1 peptidyl-prolyl cis-trans isomerse D compare
Atu0043 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu0017 -5.0 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1589 -5.0 -10.6 aminotransferase, class I compare
Atu3967 -4.9 -13.1 sugar ABC transporter substrate-binding protein compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3469 -4.8 -3.3 phosphoglyceromutase compare
Atu3970 -4.7 -17.2 sugar ABC transporter ATPase compare
Atu1456 -4.7 -12.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1844 -4.6 -5.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3969 -4.6 -9.2 sugar ABC transporter permease compare
Atu3966 -4.6 -15.5 oxidoreductase compare
Atu1454 -4.6 -8.0 siroheme synthase compare
Atu4098 -4.6 -13.7 quinolinate synthetase compare
Atu3783 -4.5 -18.3 glutamate synthase subunit beta compare
Atu3731 -4.5 -8.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0876 -4.4 -3.3 superoxide dismutase compare
Atu4097 -4.2 -13.7 L-aspartate oxidase compare
Atu0322 -4.1 -10.0 enoyl CoA hydratase compare
Atu2115 -4.1 -14.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3965 -4.1 -9.9 oxidoreductase compare
Atu4096 -4.0 -14.0 nicotinate-nucleotide pyrophosphorylase compare
Atu3964 -4.0 -10.7 dehydrogenase compare
Atu3739 -4.0 -3.2 phosphoglycerate kinase compare
Atu3784 -3.8 -27.0 glutamate synthase large subunit compare
Atu2155 -3.6 -22.2 methionine synthase compare
Atu1748 -3.6 -7.3 NIFU-like protein compare
Atu2548 -3.5 -19.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4514 -3.5 -6.1 RpiR family transcriptional regulator compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1455 -2.8 -5.1 hypothetical protein compare
Atu0029 -2.8 -7.1 S-adenosylhomocysteine hydrolase compare
Atu1359 -2.7 -1.9 dnaK deletion suppressor protein compare
Atu1446 -2.7 -4.5 two component response regulator compare
Atu3288 -2.7 -8.8 hydroxyethylthiazole kinase compare
Atu1685 -2.7 -1.9 hypothetical protein compare
Atu0723 -2.6 -2.5 FAD dependent oxidoreductase compare
Atu2569 -2.6 -13.3 thiamine biosynthesis protein compare
Atu3290 -2.4 -12.4 phosphomethylpyrimidine kinase compare
Atu4029 -2.3 -8.4 gluconolactonase compare
Atu3259 -2.3 -11.8 dehydrogenase compare
Atu0434 -2.2 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0030 -2.1 -2.5 phosphocarrier protein HPr compare
Atu0641 -2.1 -5.2 hypothetical protein compare
Atu6098 -2.1 -1.2 transcriptional regulator, HTH family compare
Atu3498 -2.1 -13.3 aldehyde dehydrogenase compare
Atu1464 -2.1 -5.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu0536 -2.0 -8.6 hypothetical protein compare
Atu1463 -2.0 -9.3 glycine cleavage system component H compare
Atu4773 -1.9 -2.6 two component response regulator compare
Atu3997 -1.8 -13.0 biotin synthetase compare
Atu1457 -1.8 -1.8 hypothetical protein compare
Atu1462 -1.8 -9.8 glycine cleavage system protein P2 compare
Atu3289 -1.8 -4.8 thiamine-phosphate pyrophosphorylase compare
Atu0422 -1.7 -1.3 ABC transporter, membrane spanning protein compare
Atu3730 -1.7 -2.2 hypothetical protein compare
Atu0803 -1.7 -11.4 pyruvate,orthophosphate dikinase compare
Atu2205 -1.7 -5.3 transcriptional regulator, MarR family compare
Atu8115 -1.7 -4.6 Hypothetical Protein compare
Atu6114 -1.6 -1.7 hypothetical protein compare
Atu4032 -1.6 -7.2 sugar ABC transporter ATPase compare
Atu4034 -1.4 -8.9 two component sensor kinase compare
Atu1028 -1.4 -3.1 hypothetical protein compare
Atu3712 -1.4 -2.3 hypothetical protein compare
Atu4031 -1.4 -9.3 sugar ABC transporter permease compare
Atu4030 -1.4 -8.6 sugar ABC transporter permease compare
Atu0421 -1.3 -1.9 ABC transporter, membrane spanning protein compare
Atu4033 -1.3 -8.0 sugar ABC transporter substrate-binding protein compare
Atu3497 -1.3 -5.2 hypothetical protein compare
Atu1891 -1.2 -3.6 cobalamin biosynthesis protein compare
Atu0361 -1.2 -2.9 transcriptional regulator compare
Atu2803 -1.2 -4.5 Cobalamin biosynthesis associated protein compare
Atu2801 -1.2 -4.9 precorrin-2 C20 methyltransferase compare
Atu0502 -1.2 -5.8 acetyl-CoA acetyltransferase compare
Atu4035 -1.2 -7.0 two component response regulator compare
Atu0346 -1.2 -4.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1163 -1.2 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2020 -1.2 -2.7 transcriptional regulator, TetR family compare
Atu1445 -1.1 -4.0 two component sensor kinase compare
Atu4317 -1.1 -2.9 TetR family transcriptional regulator compare
Atu4000 -1.1 -8.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3518 -1.1 -7.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3998 -1.1 -5.8 8-amino-7-oxononanoate synthase compare
Atu2433 -1.1 -1.4 hypothetical protein compare
Atu0503 -1.1 -7.5 enoyl-CoA hydratase compare
Atu1774 -1.1 -5.8 ABC transporter, substrate binding protein (peptide) compare
Atu0501 -1.1 -7.5 acyl-CoA dehydrogenase compare
Atu0188 -1.1 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1542 -1.1 -4.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3732 -1.0 -4.3 hemolysin compare
Atu1810 -1.0 -1.3 hypothetical protein compare
Atu1021 -1.0 -2.4 outer membrane protein compare
Atu2249 -1.0 -1.2 hypothetical protein compare
Atu0405 -1.0 -7.4 long-chain-fatty-acid-CoA-ligase compare
Atu4530 -1.0 -3.8 TetR family transcriptional regulator compare
Atu2793 -1.0 -3.5 cobyrinic acid a,c-diamide synthase compare
Atu0846 -1.0 -2.2 transcriptional regulator, MarR family compare
Atu1705 -1.0 -5.7 SEC-independent protein translocase protein compare
Atu5513 -0.9 -1.6 cold shock protein compare
Atu2428 -0.9 -6.1 exopolysaccharide production protein PssB compare
Atu0031 -0.9 -1.4 PTS system, IIA component compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu2809 -0.9 -5.5 cobalamin biosynthesis protein compare
Atu0086 -0.9 -0.6 ribosome-binding factor A compare
Atu4161 -0.9 -2.1 hypothetical protein compare
Atu2057 -0.9 -2.3 DNA helicase II compare
Atu4685 -0.9 -4.8 LacI family transcriptional regulator compare
Atu4001 -0.9 -4.5 3-oxoacyl-ACP synthase compare
Atu0687 -0.8 -2.1 hypothetical protein compare
Atu1103 -0.8 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2127 -0.8 -4.6 L-carnitine dehydratase compare
Atu4677 -0.8 -1.3 hypothetical protein compare
Atu0190 -0.8 -4.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3505 -0.8 -4.7 3-hydroxyisobutyryl-CoA hydrolase compare
Atu3727 -0.8 -2.7 hypothetical protein compare
Atu0887 -0.8 -3.9 acetyltransferase compare
Atu2209 -0.8 -2.6 pyrroline-5-carboxylate reductase compare
Atu1725 -0.8 -1.7 hypothetical protein compare
Atu4053 -0.8 -1.3 succinoglycan biosynthesis protein compare
Atu3999 -0.8 -1.6 dithiobiotin synthetase compare
Atu8035 -0.8 -1.6 hypothetical protein compare
Atu1354 -0.8 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2796 -0.8 -3.3 precorrin-4 C11-methyltransferase compare
Atu2805 -0.8 -4.6 cobalamin synthesis protein compare
Atu2207 -0.7 -1.4 two component sensor kinase compare
Atu2442 -0.7 -2.0 hypothetical protein compare
Atu1339 -0.7 -3.0 ribonuclease E compare
Atu3183 -0.7 -0.9 hypothetical protein compare
Atu1714 -0.7 -1.4 exonuclease III compare
Atu4711 -0.7 -3.0 two component sensor kinase compare
Atu0640 -0.7 -1.6 hypothetical protein compare
Atu0189 -0.7 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1904 -0.7 -1.0 transcriptional regulator compare
Atu5142 -0.7 -1.2 hypothetical protein compare
Atu3126 -0.7 -1.7 hypothetical protein compare
Atu3598 -0.7 -2.1 thiol:disulfide interchange protein compare
Atu0062 -0.7 -3.3 transcriptional regulator, ROK family compare
Atu1241 -0.7 -2.5 hypothetical protein compare
Atu2620 -0.7 -1.1 hypothetical protein compare
Atu2821 -0.7 -2.2 transcriptional regulator, GntR family compare
Atu2795 -0.7 -3.0 cobalamin biosynthetic protein compare
Atu2799 -0.7 -3.0 precorrin-6x reductase compare
Atu1495 -0.6 -2.3 hypothetical protein compare
Atu1364 -0.6 -3.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4176 -0.6 -3.7 hypothetical protein compare
Atu4410 -0.6 -2.4 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu2808 -0.6 -4.0 cobyric acid synthase compare
Atu0107 -0.6 -1.4 hypothetical protein compare
Atu1475 -0.6 -0.9 hypothetical protein compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source D-Glucuronic acid gamma lactone in Agrobacterium fabrum C58

For carbon source D-Glucuronic acid gamma lactone across organisms