Experiment set2IT062 for Pseudomonas simiae WCS417

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.6 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_18595 -6.0 -5.3 3-isopropylmalate dehydratase compare
PS417_23805 -5.8 -6.9 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -5.6 -20.2 anthranilate synthase component I compare
PS417_18560 -5.5 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -5.5 -11.7 ketol-acid reductoisomerase compare
PS417_18585 -5.4 -6.7 3-isopropylmalate dehydrogenase compare
PS417_26740 -5.3 -14.8 homoserine acetyltransferase compare
PS417_02510 -5.3 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -5.2 -2.9 3-phosphoglycerate dehydrogenase compare
PS417_02005 -5.2 -14.6 glutamate synthase compare
PS417_25720 -5.2 -9.9 anthranilate synthase component II compare
PS417_04415 -5.0 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18600 -5.0 -4.3 isopropylmalate isomerase compare
PS417_04420 -4.9 -13.4 histidinol dehydrogenase compare
PS417_23810 -4.9 -14.4 acetolactate synthase 3 catalytic subunit compare
PS417_01575 -4.8 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02000 -4.6 -14.3 glutamate synthase compare
PS417_24745 -4.5 -5.4 gamma-glutamyl phosphate reductase compare
PS417_01850 -4.4 -9.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18530 -4.4 -9.8 O-succinylhomoserine sulfhydrylase compare
PS417_01565 -4.4 -5.8 imidazole glycerol phosphate synthase compare
PS417_23545 -4.4 -3.6 gamma-glutamyl kinase compare
PS417_16465 -4.3 -11.1 sirohydrochlorin ferrochelatase compare
PS417_01605 -4.3 -2.9 phosphoglycerate mutase compare
PS417_00185 -4.2 -5.7 tryptophan synthase subunit beta compare
PS417_26745 -4.1 -8.9 methionine biosynthesis protein MetW compare
PS417_07640 -4.0 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05595 -3.9 -9.0 ornithine carbamoyltransferase compare
PS417_27195 -3.8 -2.2 N-acetylglutamate synthase compare
PS417_25715 -3.8 -7.5 anthranilate phosphoribosyltransferase compare
PS417_12290 -3.6 -8.3 sulfite reductase compare
PS417_27795 -3.5 -2.2 orotate phosphoribosyltransferase compare
PS417_01580 -3.5 -1.9 imidazole glycerol phosphate synthase compare
PS417_12855 -3.5 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06375 -3.5 -2.2 deoxycytidine triphosphate deaminase compare
PS417_00180 -3.4 -4.5 tryptophan synthase subunit alpha compare
PS417_25710 -3.3 -2.9 indole-3-glycerol-phosphate synthase compare
PS417_08125 -3.3 -2.0 prephenate dehydratase compare
PS417_26890 -3.2 -5.8 dihydroxy-acid dehydratase compare
PS417_26730 -3.1 -2.0 pyrroline-5-carboxylate reductase compare
PS417_28220 -3.0 -4.2 LysR family transcriptional regulator compare
PS417_20125 -3.0 -5.4 phosphoribosylglycinamide formyltransferase compare
PS417_24155 -2.9 -4.4 ATP-binding protein compare
PS417_27835 -2.9 -9.0 endoribonuclease compare
PS417_02415 -2.8 -6.7 phosphoserine phosphatase compare
PS417_20160 -2.7 -3.8 cysteine synthase compare
PS417_20985 -2.6 -5.3 porin compare
PS417_23110 -2.6 -5.2 2-isopropylmalate synthase compare
PS417_26995 -2.5 -11.3 phosphoserine phosphatase compare
PS417_01570 -2.5 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23995 -2.4 -1.5 preprotein translocase subunit SecG compare
PS417_21705 -2.3 -7.5 arginine N-succinyltransferase compare
PS417_01710 -2.2 -6.6 histidine utilization repressor compare
PS417_22520 -2.1 -3.7 histidine kinase compare
PS417_08220 -2.1 -1.8 epimerase compare
PS417_01560 -2.1 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_08205 -1.9 -4.4 acetyltransferase compare
PS417_24835 -1.8 -5.7 hypothetical protein compare
PS417_23770 -1.8 -3.7 exodeoxyribonuclease V subunit alpha compare
PS417_24290 -1.8 -5.1 hypothetical protein conserved
PS417_27875 -1.8 -10.9 histidine kinase compare
PS417_08860 -1.8 -8.5 small component of pyruvate transporter (yjcH-like) (from data) conserved
PS417_21035 -1.7 -7.4 multidrug transporter compare
PS417_24935 -1.7 -1.4 hypothetical protein compare
PS417_21125 -1.6 -7.7 phosphoadenosine phosphosulfate reductase compare
PS417_08865 -1.6 -12.0 large component of pyruvate transporter (actP-like) (from data) conserved
PS417_27010 -1.6 -9.1 threonine dehydratase compare
PS417_08195 -1.6 -8.8 hypothetical protein compare
PS417_08230 -1.5 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_24295 -1.5 -8.1 carbon starvation protein A conserved
PS417_20610 -1.4 -2.1 hypothetical protein compare
PS417_19600 -1.4 -2.2 exonuclease compare
PS417_08245 -1.4 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08225 -1.4 -5.3 acetolactate synthase compare
PS417_22115 -1.3 -4.0 transcriptional regulator compare
PS417_21700 -1.3 -4.5 arginine N-succinyltransferase compare
PS417_22450 -1.2 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_13510 -1.2 -1.8 polyketide cyclase compare
PS417_08580 -1.2 -6.3 histidine kinase compare
PS417_14515 -1.2 -2.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_03560 -1.2 -2.4 GTP-binding protein compare
PS417_20665 -1.2 -5.3 hypothetical protein compare
PS417_26040 -1.2 -5.2 malate synthase compare
PS417_21020 -1.2 -7.9 phosphoenolpyruvate synthase compare
PS417_09915 -1.1 -2.1 hypothetical protein compare
PS417_21690 -1.1 -4.4 N-succinylarginine dihydrolase compare
PS417_14655 -1.1 -1.7 lysine transporter LysE compare
PS417_17795 -1.1 -2.4 ABC transporter permease compare
PS417_00510 -1.1 -1.5 membrane protein compare
PS417_10015 -1.1 -1.4 hypothetical protein compare
PS417_16990 -1.1 -5.7 acyl-CoA dehydrogenase compare
PS417_05570 -1.1 -4.0 DeoR faimly transcriptional regulator compare
PS417_00085 -1.1 -2.9 16S rRNA methyltransferase compare
PS417_05840 -1.1 -3.3 LuxR family transcriptional regulator compare
PS417_26060 -1.0 -2.6 DNA polymerase III subunit epsilon compare
PS417_01920 -1.0 -2.2 ATP-dependent protease subunit HslV compare
PS417_17565 -1.0 -3.5 branched-chain amino acid aminotransferase compare
PS417_14980 -1.0 -1.5 universal stress protein UspA compare
PS417_27800 -1.0 -5.3 exodeoxyribonuclease III compare
PS417_17415 -1.0 -3.4 histidine kinase compare
PS417_22445 -0.9 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_27435 -0.9 -4.6 polyphosphate kinase compare
PS417_08200 -0.9 -2.3 hypothetical protein compare
PS417_19835 -0.9 -2.1 flagellar biosynthesis protein FliS compare
PS417_17000 -0.9 -3.4 MerR family transcriptional regulator compare
PS417_23390 -0.9 -3.9 ubiquinol oxidase subunit II compare
PS417_01210 -0.9 -5.3 hypothetical protein compare
PS417_21510 -0.9 -1.0 histidine kinase compare
PS417_00295 -0.9 -5.3 hypothetical protein compare
PS417_03310 -0.9 -3.8 carbonate dehydratase compare
PS417_13305 -0.9 -1.5 hypothetical protein compare
PS417_14075 -0.9 -2.1 hypothetical protein compare
PS417_25790 -0.8 -3.5 aminoglycoside phosphotransferase compare
PS417_08335 -0.8 -1.5 hypothetical protein compare
PS417_11845 -0.8 -3.0 RpiR family transcriptional regulator compare
PS417_04270 -0.8 -5.8 ribonuclease G compare
PS417_07170 -0.8 -2.9 hypothetical protein compare
PS417_01735 -0.8 -2.4 ABC transporter permease compare
PS417_12355 -0.8 -1.8 magnesium chelatase compare
PS417_22570 -0.8 -1.0 H-NS histone compare
PS417_27035 -0.8 -2.5 FAD-linked oxidase compare
PS417_22385 -0.8 -5.2 quinolinate synthase A compare
PS417_06200 -0.8 -3.2 protein-PII uridylyltransferase compare
PS417_13255 -0.7 -2.3 ABC transporter compare
PS417_27870 -0.7 -2.7 ATP-dependent DNA helicase RecG compare
PS417_10010 -0.7 -2.2 Replication protein P compare
PS417_04380 -0.7 -1.4 ABC transporter permease compare
PS417_26230 -0.7 -2.4 electron transfer flavoprotein subunit alpha compare
PS417_24655 -0.7 -3.2 hypothetical protein compare
PS417_17420 -0.7 -2.7 ethanol oxidation regulatory protein ercA (from data) compare
PS417_13730 -0.7 -1.9 hypothetical protein compare
PS417_26770 -0.7 -2.2 tRNA (guanine-N7)-methyltransferase compare
PS417_08155 -0.7 -1.8 integration host factor subunit beta compare
PS417_24285 -0.7 -3.9 GTP-binding protein compare
PS417_13205 -0.7 -1.5 isochorismate-pyruvate lyase compare
PS417_00535 -0.7 -1.7 Holliday junction resolvase compare
PS417_24525 -0.7 -1.6 nuclease compare
PS417_03925 -0.7 -3.1 nicotinate-nucleotide pyrophosphorylase compare
PS417_05825 -0.7 -2.1 cytochrome D ubiquinol oxidase subunit II compare
PS417_07595 -0.6 -2.0 PasA protein compare
PS417_01995 -0.6 -1.0 hypothetical protein compare
PS417_15885 -0.6 -1.5 GCN5 family acetyltransferase compare
PS417_13800 -0.6 -1.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18310 -0.6 -2.0 hypothetical protein compare
PS417_19030 -0.6 -2.6 sodium:dicarboxylate symporter compare
PS417_23575 -0.6 -2.8 hypothetical protein compare
PS417_08770 -0.6 -2.3 hypothetical protein compare
PS417_05650 -0.6 -2.7 leucyl-tRNA synthetase compare
PS417_16195 -0.6 -1.0 AraC family transcriptional regulator compare
PS417_10245 -0.6 -1.4 hypothetical protein compare
PS417_27290 -0.6 -1.4 hypothetical protein compare
PS417_18425 -0.6 -1.1 sporulation protein compare
PS417_27690 -0.6 -1.7 XRE family transcriptional regulator compare
PS417_23615 -0.6 -1.8 sulfate transporter compare
PS417_16005 -0.6 -2.2 ATPase compare
PS417_10995 -0.6 -1.6 GntR family transcriptional regulator compare
PS417_05025 -0.6 -1.5 maleylacetoacetate isomerase compare
PS417_18250 -0.6 -1.5 chemotaxis protein compare
PS417_23380 -0.6 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_03380 -0.6 -1.2 hypothetical protein compare
PS417_25270 -0.6 -1.8 NrdR family transcriptional regulator compare
PS417_15370 -0.6 -1.6 kinase compare
PS417_18885 -0.6 -1.9 GntR family transcriptional regulator compare
PS417_15725 -0.6 -2.8 nitrate/nitrite transporter NarK compare
PS417_02020 -0.6 -2.1 LysR family transcriptional regulator compare
PS417_16560 -0.6 -1.5 GNAT family acetyltransferase compare
PS417_03260 -0.6 -1.5 5S ribosomal RNA compare
PS417_07420 -0.6 -1.8 restriction endonuclease compare
PS417_08680 -0.6 -1.4 flagellar biosynthesis protein FlhB compare
PS417_08945 -0.6 -3.5 heat shock protein 90 compare
PS417_16490 -0.6 -0.7 cell division protein FtsK compare
PS417_20185 -0.6 -2.3 ketosteroid isomerase compare
PS417_20635 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_05155 -0.6 -1.6 DNA polymerase III subunit chi compare
PS417_19195 -0.5 -1.5 hypothetical protein compare
PS417_16715 -0.5 -1.1 DoxX family protein compare
PS417_14280 -0.5 -1.5 hypothetical protein compare
PS417_18070 -0.5 -0.9 general secretion pathway protein GspH compare
PS417_27155 -0.5 -0.9 aliphatic sulfonates transport ATP-binding subunit compare
PS417_06500 -0.5 -0.7 hypothetical protein compare
PS417_23375 -0.5 -1.3 cytochrome C oxidase compare
PS417_15460 -0.5 -2.5 GntR family transcriptional regulator compare
PS417_14940 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_04365 -0.5 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26755 -0.5 -1.8 nucleoside-triphosphate diphosphatase compare
PS417_09730 -0.5 -1.7 adenylylsulfate kinase compare
PS417_08990 -0.5 -2.2 ABC transporter substrate-binding protein compare
PS417_16045 -0.5 -1.7 acyl-CoA dehydrogenase compare
PS417_05695 -0.5 -1.9 transcriptional regulator compare
PS417_04225 -0.5 -1.6 conjugal transfer protein TraR compare
PS417_14295 -0.5 -1.4 AraC family transcriptional regulator compare
PS417_28510 -0.5 -2.4 chromosome partitioning protein compare
PS417_18590 -0.5 -0.9 SAM-dependent methyltransferase compare
PS417_16665 -0.5 -1.4 hypothetical protein compare
PS417_12505 -0.5 -2.2 peptidase compare
PS417_05830 -0.5 -1.6 hypothetical protein compare
PS417_15325 -0.5 -0.8 type VI secretion protein compare
PS417_12170 -0.5 -2.0 ABC transporter permease compare
PS417_26725 -0.5 -2.2 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas simiae WCS417

For carbon source Sodium pyruvate across organisms