Experiment set2IT062 for Magnetospirillum magneticum AMB-1

Compare to:

150_an_nonmag_2

200 most important genes:

  gene name fitness t score description  
AMB_RS01480 -5.8 -1.6 M48 family peptidase compare
AMB_RS06665 -4.9 -1.4 LrgB family protein compare
AMB_RS03045 -4.7 -1.3 hydrogen peroxide-inducible genes activator compare
AMB_RS22280 -4.6 -11.5 hypothetical protein compare
AMB_RS00695 -4.4 -1.4 gfo/Idh/MocA family oxidoreductase compare
AMB_RS21290 -4.4 -1.4 DUF4139 domain-containing protein compare
AMB_RS00075 -4.4 -1.2 P-II family nitrogen regulator compare
AMB_RS15610 -4.3 -4.9 hypothetical protein compare
AMB_RS20180 -4.2 -0.7 hypothetical protein compare
AMB_RS00820 -4.2 -3.0 GDP-L-fucose synthase compare
AMB_RS11640 -4.1 -2.1 UbiX family flavin prenyltransferase compare
AMB_RS21005 -4.1 -1.1 hypothetical protein compare
AMB_RS17335 -4.0 -2.7 N-acyl-L-homoserine lactone synthetase compare
AMB_RS17235 -4.0 -1.3 AsmA family protein compare
AMB_RS03205 -4.0 -1.4 DNA recombination/repair protein RecA compare
AMB_RS02725 -3.9 -1.3 phospholipid carrier-dependent glycosyltransferase compare
AMB_RS16025 -3.9 -5.0 MFS transporter compare
AMB_RS05435 -3.8 -1.7 ABC transporter permease compare
AMB_RS17350 -3.8 -2.7 rubrerythrin compare
AMB_RS13515 -3.7 -1.0 nitrate reductase cytochrome c-type subunit compare
AMB_RS07745 -3.7 -1.6 disulfide bond formation protein B compare
AMB_RS22800 -3.7 -2.0 glutathione synthase compare
AMB_RS21535 -3.7 -1.0 cyclic nucleotide-binding domain-containing protein compare
AMB_RS20350 -3.7 -9.0 aspartate 1-decarboxylase compare
AMB_RS00010 -3.6 -1.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS04280 -3.6 -11.8 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS16130 -3.6 -2.4 phosphoglycerate dehydrogenase compare
AMB_RS19325 -3.5 -12.0 NAD(P)/FAD-dependent oxidoreductase compare
AMB_RS01190 -3.3 -5.9 UbiD family decarboxylase compare
AMB_RS02825 -3.3 -1.2 phasin compare
AMB_RS22235 -3.3 -1.3 RNase adaptor protein RapZ compare
AMB_RS15295 -3.2 -1.3 iron donor protein CyaY compare
AMB_RS23155 -3.1 -0.9 two-component sensor histidine kinase compare
AMB_RS03725 -3.1 -5.1 DNA helicase II compare
AMB_RS01330 -3.1 -2.9 glycosyltransferase family 39 protein compare
AMB_RS07660 -3.0 -1.0 hypothetical protein compare
AMB_RS03230 -3.0 -1.3 hypothetical protein compare
AMB_RS01540 -3.0 -1.0 peptidase M23 compare
AMB_RS22450 -3.0 -10.3 electron transfer flavoprotein-ubiquinone oxidoreductase compare
AMB_RS00355 -2.9 -6.0 radical SAM protein compare
AMB_RS10600 -2.9 -1.9 hypothetical protein compare
AMB_RS17625 -2.9 -8.9 hopanoid biosynthesis associated radical SAM protein HpnJ compare
AMB_RS11380 -2.8 -1.1 hemerythrin compare
AMB_RS11195 -2.8 -0.6 sulfate adenylyltransferase subunit 2 compare
AMB_RS24350 -2.8 -1.0 hypothetical protein compare
AMB_RS00960 -2.7 -8.1 DNA-binding response regulator compare
AMB_RS14035 -2.7 -5.9 endopeptidase La compare
AMB_RS24545 -2.7 -0.7 hypothetical protein compare
AMB_RS04510 -2.6 -3.8 ferrous iron transporter compare
AMB_RS13145 -2.6 -2.7 positive regulator of sigma E activity compare
AMB_RS05910 -2.6 -0.7 hypothetical protein compare
AMB_RS22480 -2.6 -0.6 cell division ATP-binding protein FtsE compare
AMB_RS17540 -2.5 -0.9 potassium transporter KefB compare
AMB_RS17735 -2.5 -3.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
AMB_RS13155 -2.5 -2.8 electron transporter RnfB compare
AMB_RS00120 -2.5 -2.7 YggS family pyridoxal phosphate-dependent enzyme compare
AMB_RS05505 -2.4 -4.9 GDP-mannose 4,6-dehydratase compare
AMB_RS16100 -2.4 -3.2 RNA polymerase sigma factor RpoH compare
AMB_RS19850 -2.3 -1.6 hypothetical protein compare
AMB_RS20145 -2.3 -0.7 chromosome segregation ATPase compare
AMB_RS13585 -2.3 -2.3 alpha/beta hydrolase compare
AMB_RS04630 -2.2 -0.4 tRNA-Met compare
AMB_RS18145 -2.2 -3.7 GntR family transcriptional regulator compare
AMB_RS19860 -2.2 -7.6 HlyC/CorC family transporter compare
AMB_RS19340 -2.2 -0.5 EamA family transporter compare
AMB_RS08360 -2.2 -1.6 hypothetical protein compare
AMB_RS16375 -2.2 -1.9 MFS transporter compare
AMB_RS01160 -2.2 -3.0 glycosyltransferase compare
AMB_RS02835 -2.1 -2.2 two-component sensor histidine kinase compare
AMB_RS07010 -2.1 -5.5 ATP-dependent helicase compare
AMB_RS14620 -2.1 -1.6 ArsR family transcriptional regulator compare
AMB_RS13165 -2.1 -6.4 electron transporter RnfD compare
AMB_RS13150 -2.1 -3.1 electron transport complex subunit RsxA compare
AMB_RS06280 -2.1 -7.4 hypothetical protein compare
AMB_RS00245 -2.1 -1.9 transcriptional activator RfaH compare
AMB_RS23095 -2.1 -7.6 class I SAM-dependent methyltransferase compare
AMB_RS24445 -2.0 -2.4 hypothetical protein compare
AMB_RS04325 -2.0 -4.7 TetR/AcrR family transcriptional regulator compare
AMB_RS22565 -2.0 -8.4 MucR family transcriptional regulator compare
AMB_RS01325 -2.0 -3.0 phosphatase PAP2 family protein compare
AMB_RS14855 -2.0 -1.6 molybdate ABC transporter substrate-binding protein compare
AMB_RS01265 -2.0 -0.6 LysR family transcriptional regulator compare
AMB_RS05500 -2.0 -6.3 GDP-mannose 4,6 dehydratase compare
AMB_RS20120 -2.0 -0.9 VOC family protein compare
AMB_RS09295 -2.0 -1.1 carboxymuconolactone decarboxylase family protein compare
AMB_RS13160 -1.9 -10.6 electron transport complex subunit RsxC compare
AMB_RS12785 -1.9 -2.7 murein transglycosylase compare
AMB_RS00965 -1.9 -1.6 membrane protein compare
AMB_RS22580 -1.9 -8.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
AMB_RS21385 -1.9 -3.4 helix-turn-helix transcriptional regulator compare
AMB_RS18850 -1.9 -1.9 class I poly(R)-hydroxyalkanoic acid synthase compare
AMB_RS07700 -1.9 -0.7 hypothetical protein compare
AMB_RS23195 -1.8 -2.9 ABC transporter ATP-binding protein compare
AMB_RS12590 -1.8 -7.4 tetratricopeptide repeat protein compare
AMB_RS19880 -1.8 -2.0 site-specific tyrosine recombinase XerD compare
AMB_RS02985 -1.8 -1.1 UTP--glucose-1-phosphate uridylyltransferase compare
AMB_RS18100 -1.8 -2.4 DUF2249 domain-containing protein compare
AMB_RS03835 -1.8 -1.5 YicC family protein compare
AMB_RS02610 -1.8 -0.5 hypothetical protein compare
AMB_RS10120 -1.8 -3.0 DUF1476 domain-containing protein compare
AMB_RS01830 -1.8 -0.3 hypothetical protein compare
AMB_RS03610 -1.8 -6.0 transcription elongation factor GreA compare
AMB_RS15520 -1.7 -6.0 hypothetical protein compare
AMB_RS23090 -1.7 -2.6 NAD(P)-dependent oxidoreductase compare
AMB_RS05510 -1.7 -4.2 glycosyltransferase compare
AMB_RS12425 -1.7 -1.1 RNA methyltransferase compare
AMB_RS11500 -1.7 -1.4 XRE family transcriptional regulator compare
AMB_RS11820 -1.7 -1.9 transcriptional regulator NrdR compare
AMB_RS12385 -1.7 -2.5 alanine--glyoxylate aminotransferase family protein compare
AMB_RS14495 -1.7 -4.6 aminotransferase class V-fold PLP-dependent enzyme compare
AMB_RS02525 -1.7 -6.6 U32 family peptidase compare
AMB_RS16705 -1.7 -0.9 LysR family transcriptional regulator compare
AMB_RS14520 -1.7 -1.6 1,4-beta-N-acetylmuramidase compare
AMB_RS09120 -1.6 -2.0 ABC transporter ATP-binding protein compare
AMB_RS13180 -1.6 -1.7 protein rnfH compare
AMB_RS18110 -1.6 -1.8 cAMP-binding protein compare
AMB_RS22575 -1.6 -8.1 GNAT family N-acetyltransferase compare
AMB_RS14565 -1.6 -2.0 sensor histidine kinase compare
AMB_RS05820 -1.6 -1.5 hypothetical protein compare
AMB_RS03780 -1.6 -0.5 hypothetical protein compare
AMB_RS17845 -1.6 -4.4 hypothetical protein compare
AMB_RS17450 -1.6 -0.4 DUF1987 domain-containing protein compare
AMB_RS13510 -1.6 -3.0 cytochrome C protein NapC compare
AMB_RS22005 -1.6 -0.6 HD domain-containing protein compare
AMB_RS16280 -1.6 -1.9 5-formyltetrahydrofolate cyclo-ligase compare
AMB_RS03040 -1.6 -2.7 ABC-type transport system compare
AMB_RS13325 -1.6 -2.1 response regulator compare
AMB_RS14230 -1.5 -2.1 response regulator compare
AMB_RS23210 -1.5 -7.0 glycosyl transferase compare
AMB_RS00455 -1.5 -4.0 KR domain-containing protein compare
AMB_RS07075 -1.5 -5.1 cytochrome c-552 precursor compare
AMB_RS24000 -1.5 -2.0 glycosyltransferase family 1 protein compare
AMB_RS02500 -1.5 -1.1 hypothetical protein compare
AMB_RS01985 -1.5 -2.0 hypothetical protein compare
AMB_RS20595 -1.5 -1.3 ribosome maturation factor compare
AMB_RS07110 -1.5 -1.2 Lrp/AsnC family transcriptional regulator compare
AMB_RS17550 -1.5 -5.6 2-isopropylmalate synthase compare
AMB_RS04340 -1.5 -2.6 enoyl-CoA hydratase compare
AMB_RS21750 -1.5 -0.9 DNA-binding response regulator compare
AMB_RS16990 -1.5 -0.6 transporter component compare
AMB_RS11155 -1.4 -2.0 DNA-binding response regulator compare
AMB_RS21435 -1.4 -10.2 methylmalonyl-CoA mutase compare
AMB_RS22315 -1.4 -2.7 membrane protein compare
AMB_RS07645 -1.4 -1.4 hypothetical protein compare
AMB_RS13765 -1.4 -4.9 hypothetical protein compare
AMB_RS10210 -1.4 -5.6 xanthine and CO dehydrogenase maturation factor compare
AMB_RS00085 -1.4 -0.5 aspartate aminotransferase compare
AMB_RS22965 -1.4 -2.3 XRE family transcriptional regulator compare
AMB_RS11805 -1.4 -7.3 MucR family transcriptional regulator compare
AMB_RS11535 -1.4 -0.4 ChbG/HpnK family deacetylase compare
AMB_RS02340 -1.4 -0.9 nuclease inhibitor protein compare
AMB_RS04685 -1.4 -3.8 DNA-binding response regulator compare
AMB_RS05075 -1.4 -0.7 transcriptional regulator compare
AMB_RS14120 -1.4 -1.6 EamA family transporter compare
AMB_RS01910 -1.4 -0.4 head decoration protein compare
AMB_RS20020 -1.4 -1.0 cell division protein ZapE compare
AMB_RS10200 -1.3 -7.2 4-hydroxybenzoyl-CoA reductase subunit alpha compare
AMB_RS02530 -1.3 -5.5 U32 family peptidase compare
AMB_RS13910 -1.3 -1.2 ABC transporter ATP-binding protein compare
AMB_RS23205 -1.3 -4.2 glycosyl transferase compare
AMB_RS21955 -1.3 -0.6 hypothetical protein compare
AMB_RS12870 -1.3 -5.1 GNAT family N-acetyltransferase compare
AMB_RS18505 -1.3 -1.0 hypothetical protein compare
AMB_RS00805 -1.3 -7.0 haloacid dehalogenase compare
AMB_RS19115 -1.3 -0.9 hypothetical protein compare
AMB_RS17975 -1.3 -1.5 biopolymer transporter ExbD compare
AMB_RS11075 -1.3 -2.9 hypothetical protein compare
AMB_RS15570 -1.3 -0.7 signal transduction protein compare
AMB_RS08300 -1.3 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
AMB_RS18590 -1.3 -0.8 glycosyltransferase family 2 protein compare
AMB_RS13275 -1.3 -1.4 response regulator compare
AMB_RS12350 -1.3 -1.4 ABC transporter ATP-binding protein compare
AMB_RS07570 -1.3 -0.9 hypothetical protein compare
AMB_RS14175 -1.3 -1.0 COQ9 family protein compare
AMB_RS07445 -1.3 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
AMB_RS05560 -1.2 -1.3 hypothetical protein compare
AMB_RS02345 -1.2 -0.4 hypothetical protein compare
AMB_RS12920 -1.2 -1.9 exo-beta-1,3-glucanase compare
AMB_RS24615 -1.2 -1.9 IS3 family transposase compare
AMB_RS22490 -1.2 -1.1 YdcF family protein compare
AMB_RS21210 -1.2 -2.8 hydroxyacylglutathione hydrolase compare
AMB_RS02650 -1.2 -3.3 uroporphyrinogen-III C-methyltransferase compare
AMB_RS06005 -1.2 -1.1 hypothetical protein compare
AMB_RS17365 -1.2 -5.4 acriflavine resistance protein B compare
AMB_RS07060 -1.2 -5.9 nitrite reductase compare
AMB_RS00175 -1.2 -2.1 hypothetical protein compare
AMB_RS11230 -1.2 -5.0 heme A synthase compare
AMB_RS17240 -1.2 -2.0 OmpA family protein compare
AMB_RS05420 -1.2 -1.4 ferredoxin compare
AMB_RS12410 -1.2 -3.9 excinuclease ABC subunit UvrA compare
AMB_RS13175 -1.2 -3.4 electron transport complex subunit E compare
AMB_RS18010 -1.2 -8.2 sensor histidine kinase compare
AMB_RS13140 -1.1 -4.3 FAD:protein FMN transferase compare
AMB_RS02730 -1.1 -1.3 hypothetical protein compare
AMB_RS14195 -1.1 -2.9 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
AMB_RS06155 -1.1 -2.1 hypothetical protein compare
AMB_RS15525 -1.1 -3.8 cytochrome c553 compare
AMB_RS19790 -1.1 -1.8 NAD(P)-dependent oxidoreductase compare
AMB_RS00480 -1.1 -2.4 methyltransferase domain-containing protein compare
AMB_RS21455 -1.1 -2.5 XRE family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms