Experiment set2IT062 for Agrobacterium fabrum C58

Compare to:

D-Glucuronic acid gamma lactone carbon source

200 most important genes:

  gene name fitness t score description  
Atu0099 -7.8 -5.4 prephenate dehydratase compare
Atu1687 -7.5 -8.9 anthranilate phosphoribosyltransferase compare
Atu2264 -7.5 -7.3 2-isopropylmalate synthase compare
Atu2791 -7.4 -7.2 3-isopropylmalate dehydrogenase compare
Atu4505 -7.4 -8.8 LacI family transcriptional regulator compare
Atu2289 -7.3 -14.1 anthranilate synthase component I and II compare
Atu2650 -7.3 -11.2 glycerol-3-phosphate dehydrogenase compare
Atu1205 -7.2 -8.6 threonine dehydratase compare
Atu2709 -7.1 -16.0 3-isopropylmalate dehydratase, large subunit compare
Atu3971 -7.1 -17.8 dihydroxy-acid dehydratase compare
Atu3754 -7.1 -5.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0400 -7.1 -4.9 orotate phosphoribosyltransferase compare
Atu0432 -7.0 -9.6 O-succinylhomoserine sulfhydrylase compare
Atu0486 -7.0 -6.8 dihydroorotate dehydrogenase compare
Atu1588 -6.9 -8.3 homoserine dehydrogenase compare
Atu0679 -6.9 -4.8 ATP phosphoribosyltransferase compare
Atu2747 -6.9 -14.0 hypothetical protein compare
Atu1844 -6.9 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1141 -6.8 -8.1 Phosphoribosylglycinamide synthetase compare
Atu1750 -6.8 -6.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0038 -6.8 -6.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3706 -6.6 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu1845 -6.6 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu2036 -6.6 -13.4 acetolactate synthase III, large subunit compare
Atu1307 -6.5 -6.4 dihydroorotase compare
Atu3740 -6.5 -11.8 fructose bisphosphate aldolase compare
Atu2718 -6.5 -7.7 homoserine O-succinyltransferase compare
Atu0399 -6.4 -4.4 dihydroorotase compare
Atu0537 -6.3 -4.4 histidinol dehydrogenase compare
Atu0035 -6.3 -11.6 phosphoenolpyruvate carboxykinase compare
Atu0298 -6.2 -8.5 orotidine 5 compare
Atu3707 -6.2 -4.3 phosphoserine aminotransferase compare
Atu1140 -6.2 -4.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3973 -6.1 -5.0 hypothetical protein compare
Atu3483 -6.0 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1620 -5.9 -12.6 triosephosphate isomerase compare
Atu1308 -5.9 -4.7 aspartate carbamoyl transferase catalytic subunit compare
Atu2040 -5.9 -5.7 phosphoserine phosphatase compare
Atu1688 -5.8 -6.9 indole-3-glycerol-phosphate synthase compare
Atu1075 -5.8 -8.8 amidophosphoribosyltransferase compare
Atu3972 -5.7 -11.3 hypothetical protein compare
Atu0678 -5.6 -5.5 histidyl-tRNA synthetase compare
Atu0647 -5.5 -6.6 phosphoribosylamine--glycine ligase compare
Atu3739 -5.5 -2.8 phosphoglycerate kinase compare
Atu3968 -5.4 -11.3 sugar ABC transporter permease compare
Atu3885 -5.3 -8.8 inositol monophosphatase compare
Atu3967 -5.3 -12.3 sugar ABC transporter substrate-binding protein compare
Atu2790 -5.3 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu3731 -5.3 -10.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu3482 -5.2 -9.5 pantoate--beta-alanine ligase compare
Atu3970 -5.2 -18.2 sugar ABC transporter ATPase compare
Atu0043 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3969 -5.1 -7.5 sugar ABC transporter permease compare
Atu0017 -5.1 -4.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4098 -5.1 -16.8 quinolinate synthetase compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu1685 -5.0 -2.0 hypothetical protein compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu4096 -4.9 -10.2 nicotinate-nucleotide pyrophosphorylase compare
Atu2015 -4.9 -16.2 aminotransferase compare
Atu1850 -4.9 -4.5 phosphoribosylformylglycinamidine synthetase II compare
Atu1686 -4.9 -18.5 peptidyl-prolyl cis-trans isomerse D compare
Atu3469 -4.9 -3.3 phosphoglyceromutase compare
Atu1456 -4.9 -12.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3966 -4.8 -15.1 oxidoreductase compare
Atu2115 -4.7 -14.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0030 -4.6 -2.5 phosphocarrier protein HPr compare
Atu4097 -4.4 -14.5 L-aspartate oxidase compare
Atu0322 -4.4 -11.3 enoyl CoA hydratase compare
Atu1589 -4.4 -8.7 aminotransferase, class I compare
Atu3763 -4.3 -2.9 hypothetical protein compare
Atu4514 -4.2 -7.8 RpiR family transcriptional regulator compare
Atu3964 -4.1 -11.6 dehydrogenase compare
Atu3965 -3.9 -9.5 oxidoreductase compare
Atu1454 -3.7 -7.8 siroheme synthase compare
Atu1748 -3.7 -12.5 NIFU-like protein compare
Atu3783 -3.7 -17.0 glutamate synthase subunit beta compare
Atu2155 -3.7 -20.7 methionine synthase compare
Atu3755 -3.7 -6.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2548 -3.6 -16.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1455 -3.5 -4.0 hypothetical protein compare
Atu3784 -3.3 -23.0 glutamate synthase large subunit compare
Atu0723 -3.3 -2.2 FAD dependent oxidoreductase compare
Atu0434 -3.1 -4.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3289 -3.0 -5.6 thiamine-phosphate pyrophosphorylase compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1359 -2.9 -1.9 dnaK deletion suppressor protein compare
Atu1446 -2.8 -4.6 two component response regulator compare
Atu0536 -2.7 -11.3 hypothetical protein compare
Atu0031 -2.7 -2.3 PTS system, IIA component compare
Atu0029 -2.5 -6.2 S-adenosylhomocysteine hydrolase compare
Atu1030 -2.5 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1462 -2.4 -13.9 glycine cleavage system protein P2 compare
Atu1463 -2.4 -8.4 glycine cleavage system component H compare
Atu2569 -2.4 -12.5 thiamine biosynthesis protein compare
Atu3999 -2.4 -4.9 dithiobiotin synthetase compare
Atu6098 -2.3 -1.3 transcriptional regulator, HTH family compare
Atu3290 -2.3 -8.9 phosphomethylpyrimidine kinase compare
Atu3259 -2.1 -13.0 dehydrogenase compare
Atu0876 -2.1 -2.7 superoxide dismutase compare
Atu3288 -2.1 -9.4 hydroxyethylthiazole kinase compare
Atu4029 -2.1 -6.2 gluconolactonase compare
Atu3997 -1.9 -13.1 biotin synthetase compare
Atu1464 -1.9 -5.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu3498 -1.9 -12.0 aldehyde dehydrogenase compare
Atu0641 -1.8 -4.8 hypothetical protein compare
Atu1457 -1.8 -1.8 hypothetical protein compare
Atu4032 -1.7 -7.6 sugar ABC transporter ATPase compare
Atu4031 -1.7 -10.5 sugar ABC transporter permease compare
Atu0141 -1.7 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu8115 -1.7 -4.3 Hypothetical Protein compare
Atu3727 -1.6 -3.4 hypothetical protein compare
Atu2205 -1.6 -4.2 transcriptional regulator, MarR family compare
Atu0803 -1.6 -11.2 pyruvate,orthophosphate dikinase compare
Atu2554 -1.5 -2.3 lysyl-tRNA synthetase compare
Atu2020 -1.5 -4.5 transcriptional regulator, TetR family compare
Atu0421 -1.5 -2.0 ABC transporter, membrane spanning protein compare
Atu0346 -1.5 -5.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4030 -1.4 -6.6 sugar ABC transporter permease compare
Atu4773 -1.4 -2.1 two component response regulator compare
Atu0422 -1.4 -2.7 ABC transporter, membrane spanning protein compare
Atu3497 -1.4 -5.5 hypothetical protein compare
Atu3998 -1.4 -9.5 8-amino-7-oxononanoate synthase compare
Atu4033 -1.4 -9.7 sugar ABC transporter substrate-binding protein compare
Atu4000 -1.3 -9.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1163 -1.3 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4034 -1.3 -7.4 two component sensor kinase compare
Atu2684 -1.3 -1.8 hypothetical protein compare
Atu8012 -1.3 -2.3 hypothetical protein compare
Atu0189 -1.2 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu3732 -1.2 -5.9 hemolysin compare
Atu3121 -1.2 -1.6 cold shock protein compare
Atu1891 -1.2 -3.7 cobalamin biosynthesis protein compare
Atu1774 -1.2 -5.9 ABC transporter, substrate binding protein (peptide) compare
Atu2428 -1.2 -6.0 exopolysaccharide production protein PssB compare
Atu0026 -1.2 -1.0 hypothetical protein compare
Atu4001 -1.1 -4.8 3-oxoacyl-ACP synthase compare
Atu6165 -1.1 -1.2 hypothetical protein compare
Atu2439 -1.1 -1.5 hypothetical protein compare
Atu0190 -1.1 -3.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2800 -1.0 -3.7 precorrin-3B C17-methyltransferase compare
Atu1542 -1.0 -5.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0188 -1.0 -3.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3505 -1.0 -5.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4711 -1.0 -4.5 two component sensor kinase compare
Atu0503 -1.0 -8.0 enoyl-CoA hydratase compare
Atu0846 -1.0 -2.7 transcriptional regulator, MarR family compare
Atu4035 -1.0 -6.3 two component response regulator compare
Atu2799 -1.0 -3.3 precorrin-6x reductase compare
Atu6114 -1.0 -2.0 hypothetical protein compare
Atu3518 -1.0 -6.7 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1801 -1.0 -3.0 hypothetical protein compare
Atu3183 -1.0 -1.1 hypothetical protein compare
Atu0501 -1.0 -6.8 acyl-CoA dehydrogenase compare
Atu0895 -1.0 -2.1 ABC transporter, substrate binding protein compare
Atu3730 -0.9 -1.3 hypothetical protein compare
Atu4317 -0.9 -3.5 TetR family transcriptional regulator compare
Atu0502 -0.9 -3.9 acetyl-CoA acetyltransferase compare
Atu2804 -0.9 -6.0 cobaltochelatase subunit compare
Atu2432 -0.9 -1.4 hypothetical protein compare
Atu0405 -0.9 -7.3 long-chain-fatty-acid-CoA-ligase compare
Atu2831 -0.9 -4.1 glucose inhibited division protein A compare
Atu5142 -0.9 -1.4 hypothetical protein compare
Atu2807 -0.9 -3.9 cob(I)alamin adenosyltransferase compare
Atu1445 -0.9 -2.8 two component sensor kinase compare
Atu2491 -0.9 -2.0 hypothetical protein compare
Atu3429 -0.8 -1.3 hypothetical protein compare
Atu1846 -0.8 -1.3 hypothetical protein compare
Atu4477 -0.8 -4.4 TetR family transcriptional regulator compare
Atu2809 -0.8 -5.0 cobalamin biosynthesis protein compare
Atu1028 -0.8 -1.5 hypothetical protein compare
Atu0331 -0.8 -1.7 sigma-54 modulation protein compare
Atu2640 -0.8 -2.5 hypothetical protein compare
Atu0887 -0.8 -3.5 acetyltransferase compare
Atu8035 -0.8 -1.1 hypothetical protein compare
Atu2057 -0.8 -2.0 DNA helicase II compare
Atu1629 -0.8 -1.2 transcriptional regulator, ArsR family compare
Atu5115 -0.8 -1.0 hypothetical protein compare
Atu2127 -0.8 -4.1 L-carnitine dehydratase compare
Atu2207 -0.7 -1.6 two component sensor kinase compare
Atu1439 -0.7 -1.3 hypothetical protein compare
Atu2125 -0.7 -1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1223 -0.7 -1.0 hypothetical protein compare
Atu2209 -0.7 -3.4 pyrroline-5-carboxylate reductase compare
Atu1469 -0.7 -1.9 hypothetical protein compare
Atu1364 -0.7 -3.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0361 -0.7 -2.2 transcriptional regulator compare
Atu3496 -0.7 -3.0 hypothetical protein compare
Atu2662 -0.7 -1.0 acetyltransferase compare
Atu4053 -0.7 -1.2 succinoglycan biosynthesis protein compare
Atu1851 -0.7 -2.0 BolA/YrbA family protein compare
Atu2801 -0.7 -3.0 precorrin-2 C20 methyltransferase compare
Atu4685 -0.7 -4.5 LacI family transcriptional regulator compare
Atu2633 -0.7 -2.1 RhtB family transporter compare
Atu4530 -0.7 -3.6 TetR family transcriptional regulator compare
Atu2808 -0.7 -3.5 cobyric acid synthase compare
Atu3287 -0.7 -1.7 thiamine biosynthesis associated protein compare
Atu4173 -0.7 -1.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu0894 -0.7 -1.4 ABC transporter, membrane spanning protein compare
Atu1217 -0.7 -3.2 cysteine synthase compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source D-Glucuronic acid gamma lactone in Agrobacterium fabrum C58

For carbon source D-Glucuronic acid gamma lactone across organisms