Experiment set2IT061 for Pseudomonas simiae WCS417

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_04420 -6.0 -10.1 histidinol dehydrogenase compare
PS417_23805 -5.6 -6.4 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -5.3 -6.2 3-isopropylmalate dehydratase compare
PS417_18600 -5.3 -3.2 isopropylmalate isomerase compare
PS417_16465 -5.3 -12.2 sirohydrochlorin ferrochelatase compare
PS417_27040 -5.3 -6.2 3-phosphoglycerate dehydrogenase compare
PS417_23800 -5.2 -13.9 ketol-acid reductoisomerase compare
PS417_02005 -5.2 -13.9 glutamate synthase compare
PS417_26740 -5.1 -8.1 homoserine acetyltransferase compare
PS417_07640 -5.0 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01575 -4.9 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -4.8 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_01565 -4.8 -6.2 imidazole glycerol phosphate synthase compare
PS417_01850 -4.8 -8.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27795 -4.7 -2.0 orotate phosphoribosyltransferase compare
PS417_18530 -4.7 -9.1 O-succinylhomoserine sulfhydrylase compare
PS417_04415 -4.7 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_28220 -4.7 -4.3 LysR family transcriptional regulator compare
PS417_24745 -4.6 -7.0 gamma-glutamyl phosphate reductase compare
PS417_18585 -4.6 -8.1 3-isopropylmalate dehydrogenase compare
PS417_18560 -4.5 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -4.5 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -4.5 -12.3 acetolactate synthase 3 catalytic subunit compare
PS417_08125 -4.5 -1.9 prephenate dehydratase compare
PS417_25720 -4.4 -7.9 anthranilate synthase component II compare
PS417_25725 -4.4 -15.5 anthranilate synthase component I compare
PS417_02000 -4.3 -14.6 glutamate synthase compare
PS417_00185 -4.2 -6.3 tryptophan synthase subunit beta compare
PS417_12855 -4.1 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26745 -4.1 -5.5 methionine biosynthesis protein MetW compare
PS417_23545 -4.0 -4.4 gamma-glutamyl kinase compare
PS417_25710 -3.9 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_26890 -3.6 -6.5 dihydroxy-acid dehydratase compare
PS417_26995 -3.6 -11.8 phosphoserine phosphatase compare
PS417_20125 -3.5 -4.1 phosphoribosylglycinamide formyltransferase compare
PS417_25715 -3.4 -7.9 anthranilate phosphoribosyltransferase compare
PS417_01605 -3.4 -3.2 phosphoglycerate mutase compare
PS417_06375 -3.4 -2.0 deoxycytidine triphosphate deaminase compare
PS417_12290 -3.3 -10.0 sulfite reductase compare
PS417_27195 -3.3 -2.7 N-acetylglutamate synthase compare
PS417_05595 -3.2 -6.8 ornithine carbamoyltransferase compare
PS417_26730 -3.1 -1.9 pyrroline-5-carboxylate reductase compare
PS417_23110 -3.0 -6.0 2-isopropylmalate synthase compare
PS417_08230 -2.9 -4.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_00180 -2.8 -3.8 tryptophan synthase subunit alpha compare
PS417_27835 -2.8 -9.4 endoribonuclease compare
PS417_20160 -2.8 -3.8 cysteine synthase compare
PS417_20985 -2.7 -4.2 porin compare
PS417_21705 -2.7 -7.6 arginine N-succinyltransferase compare
PS417_02415 -2.6 -5.5 phosphoserine phosphatase compare
PS417_24155 -2.5 -4.0 ATP-binding protein compare
PS417_23995 -2.3 -1.3 preprotein translocase subunit SecG compare
PS417_01580 -2.3 -1.7 imidazole glycerol phosphate synthase compare
PS417_08245 -2.3 -2.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04365 -2.3 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21700 -2.3 -7.5 arginine N-succinyltransferase compare
PS417_01560 -2.2 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_08225 -2.1 -5.6 acetolactate synthase compare
PS417_21020 -2.0 -13.4 phosphoenolpyruvate synthase conserved
PS417_18590 -1.9 -3.6 SAM-dependent methyltransferase compare
PS417_13510 -1.8 -2.2 polyketide cyclase compare
PS417_21125 -1.8 -6.3 phosphoadenosine phosphosulfate reductase compare
PS417_01210 -1.7 -8.7 hypothetical protein compare
PS417_01570 -1.7 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08220 -1.7 -1.5 epimerase compare
PS417_27435 -1.6 -7.4 polyphosphate kinase compare
PS417_23770 -1.6 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_08195 -1.5 -7.4 hypothetical protein compare
PS417_23775 -1.5 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_20025 -1.5 -2.3 alpha-ribazole phosphatase compare
PS417_23380 -1.5 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_26005 -1.3 -7.5 biotin synthase compare
PS417_08205 -1.3 -4.7 acetyltransferase compare
PS417_20635 -1.3 -1.4 ABC transporter ATP-binding protein compare
PS417_24105 -1.3 -8.3 D-lactate transporter (lctP family) (from data) conserved
PS417_22520 -1.3 -3.0 histidine kinase compare
PS417_05455 -1.2 -5.3 XRE family transcriptional regulator compare
PS417_17035 -1.2 -1.8 Cro/Cl family transcriptional regulator compare
PS417_24835 -1.2 -3.4 hypothetical protein compare
PS417_26725 -1.2 -4.7 hypothetical protein compare
PS417_27010 -1.2 -6.3 threonine dehydratase compare
PS417_07170 -1.2 -2.5 hypothetical protein compare
PS417_18690 -1.2 -4.3 aromatic amino acid aminotransferase compare
PS417_25985 -1.2 -2.3 dethiobiotin synthetase compare
PS417_27585 -1.2 -2.0 diaminopimelate epimerase compare
PS417_06645 -1.1 -6.1 RNA polymerase-associated protein RapA compare
PS417_03310 -1.1 -5.6 carbonate dehydratase compare
PS417_08155 -1.1 -2.7 integration host factor subunit beta compare
PS417_14980 -1.1 -1.6 universal stress protein UspA compare
PS417_20610 -1.1 -1.8 hypothetical protein compare
PS417_26540 -1.0 -6.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_05570 -1.0 -2.6 DeoR faimly transcriptional regulator compare
PS417_24935 -1.0 -1.0 hypothetical protein compare
PS417_08580 -1.0 -5.5 histidine kinase compare
PS417_26000 -1.0 -4.9 8-amino-7-oxononanoate synthase compare
PS417_01995 -1.0 -1.1 hypothetical protein compare
PS417_01095 -1.0 -1.7 amino acid ABC transporter ATP-binding protein compare
PS417_21630 -0.9 -2.6 magnesium transporter compare
PS417_20665 -0.9 -3.7 hypothetical protein compare
PS417_21690 -0.9 -4.4 N-succinylarginine dihydrolase compare
PS417_23950 -0.9 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_02365 -0.9 -1.4 hypothetical protein compare
PS417_17855 -0.9 -3.5 major facilitator transporter compare
PS417_13800 -0.9 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_11925 -0.9 -2.3 hypothetical protein compare
PS417_07470 -0.9 -1.5 hypothetical protein compare
PS417_05985 -0.9 -2.7 chemotaxis protein CheY compare
PS417_25990 -0.9 -4.5 malonyl-CoA O-methyltransferase compare
PS417_20030 -0.9 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_14075 -0.9 -1.8 hypothetical protein compare
PS417_12565 -0.9 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_01710 -0.9 -3.8 histidine utilization repressor compare
PS417_07595 -0.9 -3.5 PasA protein compare
PS417_26990 -0.9 -1.6 RNA pyrophosphohydrolase compare
PS417_22875 -0.8 -1.8 hypothetical protein compare
PS417_04180 -0.8 -3.2 GntR family transcriptional regulator compare
PS417_02555 -0.8 -7.2 exoribonuclease R compare
PS417_19835 -0.8 -1.8 flagellar biosynthesis protein FliS compare
PS417_19130 -0.8 -6.1 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) compare
PS417_08365 -0.8 -0.9 hypothetical protein compare
PS417_02805 -0.8 -1.0 urease subunit gamma compare
PS417_19065 -0.8 -1.1 monooxygenase compare
PS417_18420 -0.8 -1.9 deoxyribonuclease compare
PS417_06355 -0.8 -2.1 protein-L-isoaspartate O-methyltransferase compare
PS417_09625 -0.8 -2.4 sugar ABC transporter substrate-binding protein compare
PS417_16715 -0.8 -2.0 DoxX family protein compare
PS417_06680 -0.8 -5.5 nuclease PIN compare
PS417_22445 -0.8 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_18425 -0.8 -1.3 sporulation protein compare
PS417_23315 -0.8 -1.3 transcriptional regulator compare
PS417_14940 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_17925 -0.8 -1.6 acyl-CoA dehydrogenase compare
PS417_27035 -0.7 -2.1 FAD-linked oxidase compare
PS417_02690 -0.7 -4.2 N-acylglucosamine 2-epimerase compare
PS417_22115 -0.7 -2.0 transcriptional regulator compare
PS417_23375 -0.7 -1.6 cytochrome C oxidase compare
PS417_05130 -0.7 -1.3 glutaredoxin compare
PS417_09035 -0.7 -2.9 hypothetical protein compare
PS417_06245 -0.7 -1.5 zinc metallopeptidase RseP compare
PS417_07455 -0.7 -1.4 glutamine amidotransferase compare
PS417_18445 -0.7 -2.2 glycerol-3-phosphatase compare
PS417_19125 -0.7 -2.4 LysR family transcriptional regulator compare
PS417_00480 -0.7 -2.9 hypothetical protein compare
PS417_15225 -0.7 -2.5 alpha/beta hydrolase compare
PS417_21025 -0.7 -3.4 PEP synthetase regulatory protein compare
PS417_25915 -0.7 -2.5 carbon-nitrogen hydrolase compare
PS417_17565 -0.7 -2.1 branched-chain amino acid aminotransferase compare
PS417_08200 -0.7 -1.5 hypothetical protein compare
PS417_05160 -0.7 -0.8 DNA polymerase III subunit chi compare
PS417_26815 -0.7 -1.8 peptidase M16 compare
PS417_06095 -0.7 -1.6 energy transducer TonB compare
PS417_06530 -0.7 -1.9 membrane protein compare
PS417_18400 -0.7 -2.4 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_03385 -0.6 -1.0 flavin reductase compare
PS417_14295 -0.6 -2.2 AraC family transcriptional regulator compare
PS417_04425 -0.6 -3.3 histidinol-phosphate aminotransferase compare
PS417_21725 -0.6 -1.8 amino acid transporter compare
PS417_23900 -0.6 -4.2 poly(A) polymerase compare
PS417_16320 -0.6 -1.5 protein tyrosine phosphatase compare
PS417_19075 -0.6 -3.8 ABC transporter ATP-binding protein compare
PS417_01510 -0.6 -1.5 hypothetical protein compare
PS417_05695 -0.6 -3.0 transcriptional regulator compare
PS417_21425 -0.6 -1.1 4-amino-4-deoxychorismate lyase compare
PS417_19805 -0.6 -2.6 flagellar M-ring protein FliF compare
PS417_23390 -0.6 -2.8 ubiquinol oxidase subunit II compare
PS417_26755 -0.6 -1.3 nucleoside-triphosphate diphosphatase compare
PS417_26040 -0.6 -3.0 malate synthase compare
PS417_11705 -0.6 -3.1 cyclic peptide transporter compare
PS417_07165 -0.6 -2.9 dihydrodipicolinate synthase compare
PS417_09470 -0.6 -0.8 hypothetical protein compare
PS417_04585 -0.6 -1.0 hypothetical protein compare
PS417_09930 -0.6 -1.4 hypothetical protein compare
PS417_06200 -0.6 -2.5 protein-PII uridylyltransferase compare
PS417_26260 -0.6 -1.1 hypothetical protein compare
PS417_28280 -0.6 -1.7 hypothetical protein compare
PS417_23370 -0.6 -1.7 protoheme IX farnesyltransferase compare
PS417_22565 -0.6 -0.9 formyltetrahydrofolate deformylase compare
PS417_04050 -0.6 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_15610 -0.6 -2.5 GDP-mannose pyrophosphatase compare
PS417_14515 -0.6 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_02020 -0.6 -2.4 LysR family transcriptional regulator compare
PS417_06965 -0.6 -1.5 cysteine methyltransferase compare
PS417_08540 -0.6 -2.0 RNA helicase compare
PS417_06045 -0.6 -2.2 membrane protein compare
PS417_13255 -0.6 -1.3 ABC transporter compare
PS417_09220 -0.6 -0.9 cupin compare
PS417_02700 -0.6 -1.8 urease accessory protein UreG compare
PS417_06895 -0.6 -1.7 DNA-binding protein compare
PS417_19600 -0.6 -1.0 exonuclease compare
PS417_04270 -0.6 -3.2 ribonuclease G compare
PS417_16080 -0.6 -1.9 AraC family transcriptional regulator compare
PS417_15085 -0.6 -2.4 ATPase AAA compare
PS417_20340 -0.6 -1.2 hypothetical protein compare
PS417_27705 -0.6 -1.1 amino acid dehydrogenase compare
PS417_26305 -0.6 -2.1 AraC family transcriptional regulator compare
PS417_26805 -0.5 -0.7 cell division protein FtsE compare
PS417_15305 -0.5 -1.5 type VI secretion protein compare
PS417_14235 -0.5 -1.7 hypothetical protein compare
PS417_00175 -0.5 -0.8 CigR compare
PS417_17865 -0.5 -1.5 2-keto-3-deoxy-L-rhamnonate aldolase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium D,L-Lactate across organisms