Experiment set2IT060 for Pseudomonas simiae WCS417

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.5 -5.2 isopropylmalate isomerase compare
PS417_23805 -7.3 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_27040 -6.5 -4.3 3-phosphoglycerate dehydrogenase compare
PS417_01575 -6.0 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -5.5 -8.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01855 -5.3 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_24745 -5.2 -5.1 gamma-glutamyl phosphate reductase compare
PS417_04415 -5.1 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04420 -5.1 -11.9 histidinol dehydrogenase compare
PS417_02005 -5.0 -13.7 glutamate synthase compare
PS417_23800 -4.9 -13.0 ketol-acid reductoisomerase compare
PS417_12855 -4.8 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18585 -4.7 -7.8 3-isopropylmalate dehydrogenase compare
PS417_18595 -4.6 -5.5 3-isopropylmalate dehydratase compare
PS417_18560 -4.6 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26740 -4.5 -10.2 homoserine acetyltransferase compare
PS417_06375 -4.5 -2.1 deoxycytidine triphosphate deaminase compare
PS417_25725 -4.5 -14.2 anthranilate synthase component I compare
PS417_20125 -4.4 -6.4 phosphoribosylglycinamide formyltransferase compare
PS417_23810 -4.4 -14.0 acetolactate synthase 3 catalytic subunit compare
PS417_16465 -4.3 -13.1 sirohydrochlorin ferrochelatase compare
PS417_02000 -4.2 -14.8 glutamate synthase compare
PS417_00185 -4.0 -6.0 tryptophan synthase subunit beta compare
PS417_25715 -3.9 -7.4 anthranilate phosphoribosyltransferase compare
PS417_26995 -3.9 -12.2 phosphoserine phosphatase compare
PS417_26745 -3.9 -6.0 methionine biosynthesis protein MetW compare
PS417_01850 -3.9 -10.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27195 -3.7 -2.2 N-acetylglutamate synthase compare
PS417_01565 -3.7 -4.0 imidazole glycerol phosphate synthase compare
PS417_12290 -3.7 -10.0 sulfite reductase compare
PS417_05595 -3.6 -8.6 ornithine carbamoyltransferase compare
PS417_28220 -3.6 -4.2 LysR family transcriptional regulator compare
PS417_24155 -3.6 -4.2 ATP-binding protein compare
PS417_00180 -3.5 -4.1 tryptophan synthase subunit alpha compare
PS417_23995 -3.5 -1.6 preprotein translocase subunit SecG compare
PS417_25720 -3.5 -9.8 anthranilate synthase component II compare
PS417_01580 -3.4 -1.9 imidazole glycerol phosphate synthase compare
PS417_23545 -3.3 -2.8 gamma-glutamyl kinase compare
PS417_18530 -3.3 -5.3 O-succinylhomoserine sulfhydrylase compare
PS417_20160 -3.3 -5.8 cysteine synthase compare
PS417_27835 -3.2 -6.0 endoribonuclease compare
PS417_25710 -3.1 -2.8 indole-3-glycerol-phosphate synthase compare
PS417_20985 -3.1 -5.0 porin compare
PS417_26730 -3.0 -2.0 pyrroline-5-carboxylate reductase compare
PS417_23110 -2.9 -5.9 2-isopropylmalate synthase compare
PS417_23770 -2.9 -3.8 exodeoxyribonuclease V subunit alpha compare
PS417_01605 -2.8 -2.6 phosphoglycerate mutase compare
PS417_26890 -2.8 -5.6 dihydroxy-acid dehydratase compare
PS417_02415 -2.7 -5.8 phosphoserine phosphatase compare
PS417_27795 -2.7 -2.1 orotate phosphoribosyltransferase compare
PS417_08245 -2.5 -2.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07640 -2.5 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01560 -2.5 -2.9 imidazoleglycerol-phosphate dehydratase compare
PS417_19130 -2.3 -12.3 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) conserved
PS417_04365 -2.2 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21020 -2.1 -14.7 phosphoenolpyruvate synthase conserved
PS417_26695 -2.0 -1.8 uracil phosphoribosyltransferase compare
PS417_01570 -2.0 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21705 -1.9 -6.1 arginine N-succinyltransferase compare
PS417_08220 -1.9 -1.6 epimerase compare
PS417_08230 -1.8 -3.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_18690 -1.7 -5.2 aromatic amino acid aminotransferase compare
PS417_08195 -1.6 -8.7 hypothetical protein compare
PS417_06145 -1.6 -1.5 hypothetical protein compare
PS417_01210 -1.6 -5.7 hypothetical protein compare
PS417_25985 -1.5 -2.8 dethiobiotin synthetase compare
PS417_21125 -1.5 -7.3 phosphoadenosine phosphosulfate reductase compare
PS417_24835 -1.5 -5.2 hypothetical protein compare
PS417_26540 -1.4 -8.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_08225 -1.4 -5.1 acetolactate synthase compare
PS417_27435 -1.4 -6.9 polyphosphate kinase compare
PS417_20610 -1.3 -2.1 hypothetical protein compare
PS417_08125 -1.3 -1.4 prephenate dehydratase compare
PS417_19125 -1.3 -3.7 LysR family transcriptional regulator conserved
PS417_07170 -1.3 -3.1 hypothetical protein compare
PS417_21700 -1.3 -4.3 arginine N-succinyltransferase compare
PS417_26005 -1.3 -7.3 biotin synthase compare
PS417_01995 -1.3 -2.0 hypothetical protein compare
PS417_08200 -1.3 -2.8 hypothetical protein compare
PS417_13510 -1.3 -1.8 polyketide cyclase compare
PS417_26000 -1.2 -6.6 8-amino-7-oxononanoate synthase compare
PS417_07470 -1.2 -1.7 hypothetical protein compare
PS417_18590 -1.2 -1.8 SAM-dependent methyltransferase compare
PS417_06645 -1.2 -8.2 RNA polymerase-associated protein RapA compare
PS417_02690 -1.1 -4.3 N-acylglucosamine 2-epimerase compare
PS417_20665 -1.1 -5.3 hypothetical protein compare
PS417_23380 -1.1 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_24935 -1.1 -1.1 hypothetical protein compare
PS417_22520 -1.1 -2.6 histidine kinase compare
PS417_11705 -1.1 -5.3 cyclic peptide transporter compare
PS417_03310 -1.1 -5.1 carbonate dehydratase compare
PS417_05455 -1.0 -5.0 XRE family transcriptional regulator compare
PS417_21630 -1.0 -2.7 magnesium transporter compare
PS417_25990 -1.0 -5.5 malonyl-CoA O-methyltransferase compare
PS417_24125 -1.0 -2.6 hypothetical protein compare
PS417_08205 -1.0 -2.4 acetyltransferase compare
PS417_26725 -1.0 -3.4 hypothetical protein compare
PS417_21480 -1.0 -2.0 23S rRNA pseudouridylate synthase compare
PS417_27010 -1.0 -5.8 threonine dehydratase compare
PS417_14515 -1.0 -2.2 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_03385 -0.9 -1.5 flavin reductase compare
PS417_23950 -0.9 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_26990 -0.9 -1.6 RNA pyrophosphohydrolase compare
PS417_08685 -0.9 -2.2 flagellar hook-length control protein FliK compare
PS417_21000 -0.9 -2.1 CrfX protein compare
PS417_14980 -0.9 -1.4 universal stress protein UspA compare
PS417_17755 -0.9 -1.9 hypothetical protein compare
PS417_08680 -0.9 -1.7 flagellar biosynthesis protein FlhB compare
PS417_12635 -0.9 -2.4 alkanesulfonate monooxygenase compare
PS417_23375 -0.9 -1.5 cytochrome C oxidase compare
PS417_05570 -0.9 -4.0 DeoR faimly transcriptional regulator compare
PS417_01710 -0.9 -3.6 histidine utilization repressor compare
PS417_08155 -0.9 -1.3 integration host factor subunit beta compare
PS417_01715 -0.8 -1.2 hypothetical protein compare
PS417_06200 -0.8 -4.0 protein-PII uridylyltransferase compare
PS417_23775 -0.8 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_23385 -0.8 -4.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_10010 -0.8 -2.1 Replication protein P compare
PS417_23390 -0.8 -4.2 ubiquinol oxidase subunit II compare
PS417_27870 -0.8 -2.1 ATP-dependent DNA helicase RecG compare
PS417_18025 -0.8 -2.1 cytochrome C compare
PS417_17925 -0.8 -2.4 acyl-CoA dehydrogenase compare
PS417_08540 -0.8 -2.7 RNA helicase compare
PS417_05850 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_22570 -0.8 -1.0 H-NS histone compare
PS417_01915 -0.8 -1.1 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06730 -0.8 -1.6 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_02365 -0.8 -1.9 hypothetical protein compare
PS417_13800 -0.8 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_04180 -0.7 -3.1 GntR family transcriptional regulator compare
PS417_22445 -0.7 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_08580 -0.7 -4.1 histidine kinase compare
PS417_08410 -0.7 -2.4 hypothetical protein compare
PS417_09680 -0.7 -1.7 hydrolase compare
PS417_21655 -0.7 -1.3 aspartate kinase compare
PS417_01270 -0.7 -1.8 iron ABC transporter substrate-binding protein compare
PS417_02555 -0.7 -6.1 exoribonuclease R compare
PS417_13990 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_17490 -0.7 -1.6 ABC transporter ATP-binding protein compare
PS417_12870 -0.7 -1.6 enoyl-CoA hydratase compare
PS417_02765 -0.7 -1.5 phosphate starvation-inducible protein PsiF compare
PS417_07165 -0.7 -2.6 dihydrodipicolinate synthase compare
PS417_11830 -0.7 -1.8 membrane protein compare
PS417_17565 -0.7 -1.5 branched-chain amino acid aminotransferase compare
PS417_26120 -0.7 -1.9 hypothetical protein compare
PS417_21025 -0.7 -3.2 PEP synthetase regulatory protein compare
PS417_00175 -0.7 -1.1 CigR compare
PS417_07595 -0.7 -1.6 PasA protein compare
PS417_22990 -0.7 -0.8 iron dicitrate transport regulator FecR compare
PS417_17795 -0.7 -1.5 ABC transporter permease compare
PS417_00565 -0.7 -2.8 NAD(P) transhydrogenase compare
PS417_04425 -0.7 -3.0 histidinol-phosphate aminotransferase compare
PS417_09085 -0.7 -0.7 hypothetical protein compare
PS417_09930 -0.7 -1.6 hypothetical protein compare
PS417_18435 -0.7 -1.7 hypothetical protein compare
PS417_08130 -0.7 -1.6 aspartate aminotransferase compare
PS417_20635 -0.6 -0.9 ABC transporter ATP-binding protein compare
PS417_16850 -0.6 -2.4 cation:proton antiporter compare
PS417_28145 -0.6 -1.4 AraC family transcriptional regulator compare
PS417_24570 -0.6 -3.2 AsnC family transcriptional regulator compare
PS417_18090 -0.6 -2.2 iron ABC transporter compare
PS417_17630 -0.6 -1.5 RNA polymerase sigma factor compare
PS417_18105 -0.6 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_14255 -0.6 -2.2 phosphate import ATP-binding protein PstB compare
PS417_05365 -0.6 -1.3 FAD-binding protein compare
PS417_26040 -0.6 -2.3 malate synthase compare
PS417_01145 -0.6 -0.8 taurine transporter ATP-binding subunit compare
PS417_15035 -0.6 -1.2 alkylhydroperoxidase compare
PS417_19955 -0.6 -1.6 hypothetical protein compare
PS417_12565 -0.6 -1.2 2-dehydro-3-deoxygluconokinase compare
PS417_06680 -0.6 -4.2 nuclease PIN compare
PS417_23370 -0.6 -1.7 protoheme IX farnesyltransferase compare
PS417_24630 -0.6 -1.9 ATP-binding protein compare
PS417_27595 -0.6 -1.3 recombinase XerC compare
PS417_25390 -0.6 -3.1 MFS transporter compare
PS417_21430 -0.6 -1.7 3-oxoacyl-ACP synthase compare
PS417_16680 -0.6 -1.7 MFS transporter compare
PS417_03145 -0.6 -1.6 acetyl-CoA acetyltransferase compare
PS417_21055 -0.6 -2.2 threonyl-tRNA synthetase compare
PS417_06600 -0.6 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_03705 -0.6 -1.0 2-alkenal reductase compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_06945 -0.6 -1.1 membrane protein compare
PS417_12830 -0.6 -2.8 LysR family transcriptional regulator compare
PS417_00295 -0.6 -3.7 hypothetical protein compare
PS417_22535 -0.6 -2.6 ornithine acetyltransferase compare
PS417_26175 -0.6 -0.8 sarcosine oxidase subunit gamma compare
PS417_25380 -0.6 -1.5 hypothetical protein compare
PS417_00085 -0.6 -1.7 16S rRNA methyltransferase compare
PS417_05695 -0.6 -2.6 transcriptional regulator compare
PS417_11770 -0.6 -1.4 pyruvate dehydrogenase compare
PS417_16945 -0.6 -1.8 LuxR family transcriptional regulator compare
PS417_15455 -0.6 -2.4 ABC transporter substrate-binding protein compare
PS417_10265 -0.6 -2.0 peptidase compare
PS417_22115 -0.6 -2.1 transcriptional regulator compare
PS417_01620 -0.5 -2.1 preprotein translocase subunit SecB compare
PS417_27005 -0.5 -0.8 membrane protein compare
PS417_12655 -0.5 -2.3 methionine aminopeptidase compare
PS417_04375 -0.5 -1.3 ABC transporter ATP-binding protein compare
PS417_11180 -0.5 -1.5 TetR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium L-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium L-Lactate across organisms