Experiment set2IT059 for Pseudomonas simiae WCS417

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_23805 -7.1 -4.9 acetolactate synthase 3 regulatory subunit compare
PS417_27040 -6.2 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.2 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_01565 -5.7 -4.7 imidazole glycerol phosphate synthase compare
PS417_18595 -5.4 -4.9 3-isopropylmalate dehydratase compare
PS417_18585 -5.4 -6.4 3-isopropylmalate dehydrogenase compare
PS417_02005 -5.3 -11.4 glutamate synthase compare
PS417_26740 -5.3 -9.0 homoserine acetyltransferase compare
PS417_02510 -5.2 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25725 -5.1 -17.7 anthranilate synthase component I compare
PS417_23800 -5.1 -10.4 ketol-acid reductoisomerase compare
PS417_23810 -5.0 -14.2 acetolactate synthase 3 catalytic subunit compare
PS417_18560 -5.0 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23545 -4.9 -3.4 gamma-glutamyl kinase compare
PS417_04420 -4.8 -11.2 histidinol dehydrogenase compare
PS417_04415 -4.7 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_24745 -4.7 -5.5 gamma-glutamyl phosphate reductase compare
PS417_18600 -4.6 -4.3 isopropylmalate isomerase compare
PS417_01575 -4.6 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02000 -4.6 -11.4 glutamate synthase compare
PS417_00185 -4.6 -4.4 tryptophan synthase subunit beta compare
PS417_25720 -4.5 -9.9 anthranilate synthase component II compare
PS417_27795 -4.4 -2.1 orotate phosphoribosyltransferase compare
PS417_01850 -4.4 -7.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20125 -4.3 -5.1 phosphoribosylglycinamide formyltransferase compare
PS417_16465 -4.3 -10.0 sirohydrochlorin ferrochelatase compare
PS417_08125 -4.2 -1.9 prephenate dehydratase compare
PS417_27835 -4.1 -10.5 endoribonuclease compare
PS417_24105 -3.8 -9.9 D-lactate transporter (lctP family) (from data) conserved
PS417_24110 -3.8 -7.8 4Fe-4S ferredoxin conserved
PS417_26745 -3.8 -6.6 methionine biosynthesis protein MetW compare
PS417_25710 -3.7 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_12855 -3.6 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05595 -3.6 -8.3 ornithine carbamoyltransferase compare
PS417_27195 -3.5 -2.1 N-acetylglutamate synthase compare
PS417_12290 -3.5 -8.5 sulfite reductase compare
PS417_18530 -3.5 -4.4 O-succinylhomoserine sulfhydrylase compare
PS417_25715 -3.5 -7.0 anthranilate phosphoribosyltransferase compare
PS417_28220 -3.2 -3.0 LysR family transcriptional regulator compare
PS417_26995 -3.2 -10.2 phosphoserine phosphatase compare
PS417_02415 -3.1 -6.9 phosphoserine phosphatase compare
PS417_20160 -3.0 -4.9 cysteine synthase compare
PS417_06375 -3.0 -1.9 deoxycytidine triphosphate deaminase compare
PS417_26730 -2.9 -1.9 pyrroline-5-carboxylate reductase compare
PS417_07640 -2.9 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_26890 -2.9 -5.1 dihydroxy-acid dehydratase compare
PS417_23110 -2.8 -5.8 2-isopropylmalate synthase compare
PS417_24155 -2.7 -3.9 ATP-binding protein compare
PS417_01580 -2.7 -2.3 imidazole glycerol phosphate synthase compare
PS417_01560 -2.7 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_04365 -2.7 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00180 -2.3 -3.3 tryptophan synthase subunit alpha compare
PS417_22520 -2.3 -3.4 histidine kinase compare
PS417_20985 -2.3 -3.3 porin compare
PS417_24765 -2.3 -5.5 membrane protein compare
PS417_20610 -2.2 -2.4 hypothetical protein compare
PS417_21125 -2.0 -8.7 phosphoadenosine phosphosulfate reductase compare
PS417_21705 -2.0 -5.9 arginine N-succinyltransferase compare
PS417_23995 -2.0 -1.2 preprotein translocase subunit SecG compare
PS417_01570 -1.9 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20635 -1.9 -1.7 ABC transporter ATP-binding protein compare
PS417_01605 -1.7 -1.9 phosphoglycerate mutase compare
PS417_05570 -1.7 -4.0 DeoR faimly transcriptional regulator compare
PS417_23375 -1.7 -1.8 cytochrome C oxidase compare
PS417_08230 -1.7 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21480 -1.7 -2.6 23S rRNA pseudouridylate synthase compare
PS417_21700 -1.7 -5.3 arginine N-succinyltransferase compare
PS417_01210 -1.6 -8.6 hypothetical protein compare
PS417_23770 -1.6 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_08220 -1.6 -1.4 epimerase compare
PS417_22570 -1.5 -1.5 H-NS histone compare
PS417_21035 -1.5 -9.1 multidrug transporter compare
PS417_08225 -1.5 -5.4 acetolactate synthase compare
PS417_21020 -1.4 -8.6 phosphoenolpyruvate synthase conserved
PS417_23380 -1.4 -2.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_26990 -1.4 -2.1 RNA pyrophosphohydrolase compare
PS417_16715 -1.3 -1.7 DoxX family protein compare
PS417_19190 -1.3 -2.5 BolA family transcriptional regulator compare
PS417_08195 -1.3 -7.0 hypothetical protein compare
PS417_18690 -1.3 -4.0 aromatic amino acid aminotransferase compare
PS417_20665 -1.3 -4.7 hypothetical protein compare
PS417_10245 -1.3 -2.1 hypothetical protein compare
PS417_14980 -1.3 -1.7 universal stress protein UspA compare
PS417_26805 -1.2 -1.3 cell division protein FtsE compare
PS417_12355 -1.2 -2.8 magnesium chelatase compare
PS417_24935 -1.2 -1.0 hypothetical protein compare
PS417_08580 -1.2 -5.0 histidine kinase compare
PS417_27010 -1.2 -6.4 threonine dehydratase compare
PS417_22385 -1.2 -7.6 quinolinate synthase A compare
PS417_19425 -1.1 -1.3 allantoicase compare
PS417_24835 -1.1 -3.5 hypothetical protein compare
PS417_06635 -1.1 -1.6 ferredoxin compare
PS417_00370 -1.1 -1.3 hypothetical protein compare
PS417_02555 -1.1 -8.8 exoribonuclease R compare
PS417_23370 -1.1 -2.8 protoheme IX farnesyltransferase compare
PS417_03925 -1.1 -6.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_07170 -1.1 -2.3 hypothetical protein compare
PS417_02385 -1.0 -1.8 esterase compare
PS417_19835 -1.0 -1.2 flagellar biosynthesis protein FliS compare
PS417_23385 -1.0 -5.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_18590 -1.0 -1.6 SAM-dependent methyltransferase compare
PS417_06200 -1.0 -4.5 protein-PII uridylyltransferase compare
PS417_06645 -1.0 -5.6 RNA polymerase-associated protein RapA compare
PS417_07595 -1.0 -3.5 PasA protein compare
PS417_01710 -1.0 -4.4 histidine utilization repressor compare
PS417_05975 -1.0 -0.8 chemotaxis protein CheW compare
PS417_26005 -1.0 -5.5 biotin synthase compare
PS417_05455 -1.0 -4.3 XRE family transcriptional regulator compare
PS417_08205 -1.0 -3.3 acetyltransferase compare
PS417_17490 -1.0 -2.0 ABC transporter ATP-binding protein compare
PS417_23390 -1.0 -4.6 ubiquinol oxidase subunit II compare
PS417_23170 -1.0 -1.2 FeS assembly protein IscX compare
PS417_10040 -1.0 -0.9 MFS transporter compare
PS417_04220 -0.9 -1.3 4-carboxymuconolactone decarboxylase compare
PS417_03145 -0.9 -2.0 acetyl-CoA acetyltransferase compare
PS417_27875 -0.9 -5.6 histidine kinase compare
PS417_09235 -0.9 -1.0 molecular chaperone compare
PS417_23775 -0.9 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_08740 -0.9 -2.2 ribose-phosphate pyrophosphokinase compare
PS417_18755 -0.9 -2.2 CrtK compare
PS417_23900 -0.9 -5.9 poly(A) polymerase compare
PS417_14200 -0.9 -2.5 hypothetical protein compare
PS417_14235 -0.9 -1.7 hypothetical protein compare
PS417_15475 -0.8 -3.4 IclR family transcriptional regulator compare
PS417_04585 -0.8 -1.3 hypothetical protein compare
PS417_19285 -0.8 -1.4 ankyrin compare
PS417_03260 -0.8 -1.7 5S ribosomal RNA compare
PS417_26770 -0.8 -2.2 tRNA (guanine-N7)-methyltransferase compare
PS417_22115 -0.8 -2.1 transcriptional regulator compare
PS417_22445 -0.8 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_18400 -0.8 -2.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_04180 -0.8 -2.4 GntR family transcriptional regulator compare
PS417_16100 -0.8 -2.7 antibiotic biosynthesis monooxygenase compare
PS417_06680 -0.8 -4.9 nuclease PIN compare
PS417_02765 -0.8 -1.6 phosphate starvation-inducible protein PsiF compare
PS417_00485 -0.8 -1.7 ABC transporter permease compare
PS417_12565 -0.8 -2.0 2-dehydro-3-deoxygluconokinase compare
PS417_19065 -0.8 -1.1 monooxygenase compare
PS417_03310 -0.8 -3.0 carbonate dehydratase compare
PS417_27005 -0.8 -1.0 membrane protein compare
PS417_10265 -0.8 -2.4 peptidase compare
PS417_17035 -0.7 -1.2 Cro/Cl family transcriptional regulator compare
PS417_02020 -0.7 -3.3 LysR family transcriptional regulator compare
PS417_16005 -0.7 -2.1 ATPase compare
PS417_27180 -0.7 -1.8 peroxidase compare
PS417_19630 -0.7 -1.8 LuxR family transcriptional regulator compare
PS417_08320 -0.7 -1.4 metal-chelation protein CHAD compare
PS417_10010 -0.7 -2.1 Replication protein P compare
PS417_13165 -0.7 -2.2 peroxidase compare
PS417_04115 -0.7 -2.7 alpha/beta hydrolase compare
PS417_08200 -0.7 -2.0 hypothetical protein compare
PS417_27435 -0.7 -3.0 polyphosphate kinase compare
PS417_13820 -0.7 -3.2 UDP-glucose 6-dehydrogenase compare
PS417_21000 -0.7 -1.6 CrfX protein compare
PS417_27290 -0.7 -1.3 hypothetical protein compare
PS417_10480 -0.7 -1.7 glutathione S-transferase compare
PS417_05905 -0.7 -1.1 hypothetical protein compare
PS417_19600 -0.7 -0.6 exonuclease compare
PS417_26605 -0.7 -0.8 malonate decarboxylase subunit beta compare
PS417_00660 -0.7 -2.1 DSBA oxidoreductase compare
PS417_21750 -0.7 -5.8 acetyl-CoA synthetase compare
PS417_18445 -0.7 -1.6 glycerol-3-phosphatase compare
PS417_13525 -0.7 -3.1 membrane protein compare
PS417_14940 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_21360 -0.7 -1.0 termination factor Rho compare
PS417_24115 -0.7 -1.0 hypothetical protein compare
PS417_28070 -0.7 -3.6 phosphate ABC transporter ATP-binding protein compare
PS417_05985 -0.7 -2.1 chemotaxis protein CheY compare
PS417_26300 -0.7 -2.5 hypothetical protein compare
PS417_10185 -0.7 -1.9 hypothetical protein compare
PS417_08245 -0.7 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19125 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_13445 -0.7 -1.6 D-aminopeptidase compare
PS417_13990 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_26725 -0.6 -1.8 hypothetical protein compare
PS417_02280 -0.6 -1.7 GlcNAc-PI de-N-acetylase compare
PS417_25030 -0.6 -1.9 hypothetical protein compare
PS417_03740 -0.6 -2.2 peptidylprolyl isomerase compare
PS417_14075 -0.6 -1.4 hypothetical protein compare
PS417_08430 -0.6 -2.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_13140 -0.6 -1.1 oxidoreductase compare
PS417_17855 -0.6 -2.5 major facilitator transporter compare
PS417_07875 -0.6 -0.8 hypothetical protein compare
PS417_27035 -0.6 -2.0 FAD-linked oxidase compare
PS417_01140 -0.6 -2.0 taurine ABC transporter permease compare
PS417_04425 -0.6 -2.8 histidinol-phosphate aminotransferase compare
PS417_19805 -0.6 -2.4 flagellar M-ring protein FliF compare
PS417_21210 -0.6 -1.7 amidotransferase compare
PS417_13510 -0.6 -1.0 polyketide cyclase compare
PS417_09150 -0.6 -1.6 energy transducer TonB compare
PS417_11845 -0.6 -2.3 RpiR family transcriptional regulator compare
PS417_05825 -0.6 -2.2 cytochrome D ubiquinol oxidase subunit II compare
PS417_20480 -0.6 -1.6 hypothetical protein compare
PS417_15725 -0.6 -2.7 nitrate/nitrite transporter NarK compare
PS417_12325 -0.6 -1.5 precorrin-4 C11-methyltransferase compare
PS417_22195 -0.6 -2.5 peptidase compare
PS417_02560 -0.6 -1.2 23S rRNA methyltransferase compare
PS417_01760 -0.6 -2.0 imidazolonepropionase compare
PS417_00565 -0.6 -2.0 NAD(P) transhydrogenase compare
PS417_27535 -0.6 -3.7 chemotaxis protein CheY compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium D-Lactate across organisms