Experiment set2IT059 for Pseudomonas simiae WCS417

Compare to:

Sodium D-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_08620 +1.3 1.7 hypothetical protein compare
PS417_15770 +1.0 1.8 pyridoxine 5'-phosphate oxidase compare
PS417_24650 +0.9 2.8 membrane protein compare
PS417_02225 +0.9 2.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23855 +0.9 2.7 ABC transporter substrate-binding protein compare
PS417_18055 +0.9 1.1 general secretion pathway protein GspK compare
PS417_00755 +0.9 1.1 biofilm PGA synthesis protein PgaD compare
PS417_01405 +0.9 2.0 sugar transporter compare
PS417_03385 +0.8 1.9 flavin reductase compare
PS417_01630 +0.8 1.8 hypothetical protein compare
PS417_06540 +0.8 1.8 membrane protein compare
PS417_14590 +0.8 1.8 LysR family transcriptional regulator compare
PS417_03655 +0.8 3.6 short-chain dehydrogenase compare
PS417_28145 +0.8 2.7 AraC family transcriptional regulator compare
PS417_19825 +0.8 5.8 ATPase AAA compare
PS417_10985 +0.8 1.1 NADH:flavin oxidoreductase compare
PS417_21680 +0.7 2.6 succinylglutamate desuccinylase compare
PS417_23360 +0.7 1.2 hypothetical protein compare
PS417_27815 +0.7 1.1 hypothetical protein compare
PS417_14810 +0.7 1.8 Fosmidomycin resistance protein compare
PS417_08545 +0.7 1.7 aromatic ring-opening dioxygenase LigB compare
PS417_07455 +0.7 1.8 glutamine amidotransferase compare
PS417_15510 +0.7 2.0 hypothetical protein compare
PS417_00995 +0.7 1.9 alpha/beta hydrolase compare
PS417_24100 +0.7 4.3 transcriptional regulator PdhR compare
PS417_07700 +0.7 1.8 chromosome partitioning protein ParA compare
PS417_23580 +0.7 1.3 peptidylprolyl isomerase compare
PS417_21270 +0.7 1.0 translation initiation factor 2 compare
PS417_05235 +0.7 1.4 peptidase inhibitor I42 compare
PS417_10865 +0.7 2.2 GNAT family acetyltransferase compare
PS417_03475 +0.7 1.1 type III secretion protein compare
PS417_27315 +0.6 1.2 hypothetical protein compare
PS417_17610 +0.6 0.8 AsnC family transcriptional regulator compare
PS417_15885 +0.6 1.6 GCN5 family acetyltransferase compare
PS417_20790 +0.6 3.1 adenine phosphoribosyltransferase compare
PS417_09210 +0.6 1.2 TetR family transcriptional regulator compare
PS417_14175 +0.6 2.6 ArsC family transcriptional regulator compare
PS417_06500 +0.6 0.9 hypothetical protein compare
PS417_03970 +0.6 1.3 1-phosphofructokinase compare
PS417_22990 +0.6 1.1 iron dicitrate transport regulator FecR compare
PS417_03455 +0.6 1.4 type III secretion protein compare
PS417_16370 +0.6 4.5 chemotaxis protein CheY compare
PS417_03465 +0.6 1.4 type III secretion protein compare
PS417_19695 +0.6 3.8 flagellar biosynthesis sigma factor compare
PS417_12390 +0.6 1.4 hypothetical protein compare
PS417_00705 +0.6 1.1 MarR family transcriptional regulator compare
PS417_26900 +0.6 1.4 L-cystine transporter tcyP compare
PS417_15975 +0.6 1.5 glutamate carboxypeptidase compare
PS417_00975 +0.6 1.6 hypothetical protein compare
PS417_11615 +0.6 1.3 urea ABC transporter ATP-binding protein compare
PS417_06435 +0.6 2.1 glutathione S-transferase compare
PS417_22375 +0.6 0.8 cold-shock protein compare
PS417_03350 +0.6 2.6 cytochrome C peroxidase compare
PS417_10720 +0.6 2.1 chemotaxis protein CheY compare
PS417_25280 +0.6 2.2 methyltransferase compare
PS417_22945 +0.6 1.8 phosphoribosylglycinamide formyltransferase compare
PS417_21565 +0.6 2.0 flagellar basal body rod protein FlgC compare
PS417_00635 +0.6 2.5 sulfonate ABC transporter ATP-binding protein compare
PS417_19725 +0.6 3.0 flagellar biosynthesis protein FlhB compare
PS417_17835 +0.6 2.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_09610 +0.6 2.7 beta-xylosidase compare
PS417_05610 +0.6 1.7 bacterioferritin compare
PS417_13645 +0.6 1.4 ABC transporter compare
PS417_11175 +0.5 1.7 AraC family transcriptional regulator compare
PS417_11440 +0.5 1.2 hypothetical protein compare
PS417_14245 +0.5 1.0 hypothetical protein compare
PS417_13620 +0.5 1.0 thermostable hemolysin compare
PS417_26060 +0.5 1.5 DNA polymerase III subunit epsilon compare
PS417_16255 +0.5 1.4 RNA polymerase sigma factor compare
PS417_11760 +0.5 1.8 Fis family transcriptional regulator compare
PS417_01390 +0.5 3.4 PbsX family transcriptional regulator compare
PS417_01420 +0.5 4.0 histidine kinase compare
PS417_06445 +0.5 1.1 iron-siderophore ABC transporter permease compare
PS417_01685 +0.5 2.0 membrane protein compare
PS417_15285 +0.5 0.8 type VI secretion protein compare
PS417_06970 +0.5 1.7 LysR family transcriptional regulator compare
PS417_03940 +0.5 1.4 membrane protein compare
PS417_01395 +0.5 3.8 biofilm formation protein PelB compare
PS417_04290 +0.5 1.9 hypothetical protein compare
PS417_17305 +0.5 1.0 hypothetical protein compare
PS417_19870 +0.5 1.9 flagellar rod assembly protein FlgJ compare
PS417_21710 +0.5 2.2 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_08500 +0.5 2.4 LysR family transcriptional regulator compare
PS417_10860 +0.5 1.7 flagellar basal body rod protein FlgG compare
PS417_10275 +0.5 0.8 histidine kinase compare
PS417_21070 +0.5 1.5 aconitate hydratase compare
PS417_19735 +0.5 1.9 flagellar biosynthesis protein FliQ compare
PS417_08590 +0.5 1.2 hypothetical protein compare
PS417_04875 +0.5 0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_13335 +0.5 2.3 aldo/keto reductase compare
PS417_08575 +0.5 1.8 MarR family transcriptional regulator compare
PS417_26050 +0.5 2.5 response regulator compare
PS417_11950 +0.5 1.0 hypothetical protein compare
PS417_14280 +0.5 1.4 hypothetical protein compare
PS417_05165 +0.5 1.9 cytosol aminopeptidase compare
PS417_19010 +0.5 2.9 LysR family transcriptional regulator compare
PS417_08365 +0.5 0.7 hypothetical protein compare
PS417_15820 +0.5 1.3 universal stress protein UspA compare
PS417_11820 +0.5 1.6 histidine kinase compare
PS417_03710 +0.5 2.0 metal-binding protein compare
PS417_18165 +0.5 0.9 membrane protein compare
PS417_21425 +0.5 1.0 4-amino-4-deoxychorismate lyase compare
PS417_00960 +0.5 1.0 transcriptional regulator compare
PS417_06330 +0.5 1.4 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_20080 +0.5 1.5 peptidase P60 compare
PS417_27235 +0.5 1.0 ribonucleotide reductase compare
PS417_16055 +0.4 1.6 biopolymer transporter TolR compare
PS417_14065 +0.4 2.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_00550 +0.4 0.8 hypothetical protein compare
PS417_19095 +0.4 1.0 hypothetical protein compare
PS417_18265 +0.4 1.4 AsnC family transcriptional regulator compare
PS417_03375 +0.4 1.6 hypothetical protein compare
PS417_01410 +0.4 2.8 transporter compare
PS417_11670 +0.4 1.4 multidrug transporter MATE compare
PS417_22370 +0.4 2.3 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_11825 +0.4 1.2 transcriptional regulator compare
PS417_08420 +0.4 1.9 lipoprotein compare
PS417_28340 +0.4 1.0 hypothetical protein compare
PS417_12755 +0.4 1.5 RND transporter compare
PS417_08405 +0.4 3.0 esterase compare
PS417_18475 +0.4 1.5 Pyrrolidone-carboxylate peptidase compare
PS417_19745 +0.4 1.7 flagellar assembly protein FliO compare
PS417_01415 +0.4 2.8 glycosyl transferase family 1 compare
PS417_03895 +0.4 1.4 methyltransferase compare
PS417_19500 +0.4 1.3 antibiotic synthesis protein MbtH compare
PS417_03045 +0.4 0.9 hypothetical protein compare
PS417_27065 +0.4 1.8 hypothetical protein compare
PS417_17670 +0.4 1.8 ABC transporter permease compare
PS417_11300 +0.4 1.4 general secretion pathway protein GspE compare
PS417_24400 +0.4 1.6 peptidase compare
PS417_23005 +0.4 1.7 XRE family transcriptional regulator compare
PS417_24310 +0.4 1.5 ankyrin compare
PS417_16195 +0.4 0.8 AraC family transcriptional regulator compare
PS417_19110 +0.4 2.0 hypothetical protein compare
PS417_08535 +0.4 1.5 enoyl-CoA hydratase compare
PS417_02520 +0.4 2.2 chemotaxis protein compare
PS417_03080 +0.4 1.1 hypothetical protein compare
PS417_01790 +0.4 2.6 glucan biosynthesis protein G compare
PS417_06985 +0.4 1.8 metal ABC transporter ATPase compare
PS417_05140 +0.4 1.2 dipicolinate synthase compare
PS417_06365 +0.4 2.3 RNA polymerase sigma factor compare
PS417_26125 +0.4 1.3 glutathione S-transferase compare
PS417_00065 +0.4 0.7 3-methyladenine DNA glycosylase compare
PS417_04050 +0.4 0.9 peptide ABC transporter ATP-binding protein compare
PS417_19200 +0.4 0.8 fumarate hydratase compare
PS417_26470 +0.4 1.3 cytochrome C compare
PS417_01145 +0.4 0.7 taurine transporter ATP-binding subunit compare
PS417_21955 +0.4 1.4 dehydrogenase compare
PS417_09890 +0.4 2.3 hypothetical protein compare
PS417_15985 +0.4 1.8 amino acid transporter compare
PS417_26295 +0.4 1.5 gamma-butyrobetaine dioxygenase compare
PS417_28185 +0.4 1.5 homocysteine methyltransferase compare
PS417_24600 +0.4 1.9 hydrogenase compare
PS417_27785 +0.4 2.5 phosphoglucomutase compare
PS417_17345 +0.4 2.0 hypothetical protein compare
PS417_21740 +0.4 2.7 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_19765 +0.4 2.2 flagellar hook-length control protein compare
PS417_09160 +0.4 1.4 GNAT family acetyltransferase compare
PS417_20825 +0.4 0.8 drug:proton antiporter compare
PS417_02995 +0.4 1.9 NUDIX hydrolase compare
PS417_14070 +0.4 1.0 hypothetical protein compare
PS417_05785 +0.4 1.5 tail protein compare
PS417_24830 +0.4 1.7 GNAT family acetyltransferase compare
PS417_03560 +0.4 0.9 GTP-binding protein compare
PS417_25765 +0.4 1.2 transcriptional regulator compare
PS417_13725 +0.4 1.7 membrane protein compare
PS417_27935 +0.4 0.7 type VI secretion protein compare
PS417_04060 +0.4 1.3 dipeptide ABC transporter, permease component (from data) compare
PS417_21495 +0.4 1.4 lipoprotein compare
PS417_17095 +0.4 1.5 spore coat protein compare
PS417_04500 +0.4 0.8 hypothetical protein compare
PS417_27050 +0.4 1.9 ABC transporter substrate-binding protein compare
PS417_01960 +0.4 0.8 pilus assembly protein compare
PS417_18855 +0.4 2.5 peptidase compare
PS417_18355 +0.4 2.5 DNA-binding protein compare
PS417_11735 +0.4 1.8 methionine gamma-lyase compare
PS417_00470 +0.4 2.2 glutamate:protein symporter compare
PS417_09305 +0.4 1.6 hypothetical protein compare
PS417_28050 +0.4 0.9 hypothetical protein compare
PS417_21840 +0.4 1.7 chemotaxis protein compare
PS417_14475 +0.4 2.3 2-hydroxyacid dehydrogenase compare
PS417_07820 +0.4 1.0 transposase compare
PS417_16275 +0.4 1.3 hypothetical protein compare
PS417_17840 +0.4 1.1 betaine-aldehyde dehydrogenase compare
PS417_24235 +0.4 1.4 hypothetical protein compare
PS417_09245 +0.4 0.9 recombinase RdgC compare
PS417_21325 +0.4 1.9 arabinose ABC transporter permease compare
PS417_01875 +0.4 1.1 polyhydroxyalkanoic acid system protein compare
PS417_21850 +0.4 0.7 LysR family transcriptional regulator compare
PS417_10655 +0.4 1.1 LuxR family transcriptional regulator compare
PS417_17705 +0.4 1.4 LacI family transcriptional regulator compare
PS417_18730 +0.4 1.2 ABC transporter permease compare
PS417_02070 +0.4 0.6 membrane protein compare
PS417_10340 +0.4 1.3 alcohol dehydrogenase compare
PS417_16115 +0.4 1.7 transcriptional regulator compare
PS417_20845 +0.4 1.9 hypothetical protein compare
PS417_09620 +0.4 2.6 lipopolysaccharide biosynthesis protein compare
PS417_21570 +0.4 1.6 flagellar basal body rod protein FlgB compare
PS417_19975 +0.4 1.0 hypothetical protein compare
PS417_18195 +0.4 0.9 3-(3-hydroxyphenyl)propionate hydroxylase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium D-Lactate across organisms