Experiment set2IT059 for Agrobacterium fabrum C58

Compare to:

Stachyose hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -7.7 -7.5 anthranilate phosphoribosyltransferase compare
Atu1140 -7.0 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2791 -6.8 -8.1 3-isopropylmalate dehydrogenase compare
Atu0432 -6.8 -8.1 O-succinylhomoserine sulfhydrylase compare
Atu2289 -6.8 -15.8 anthranilate synthase component I and II compare
Atu3754 -6.7 -8.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0038 -6.5 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1075 -6.4 -6.2 amidophosphoribosyltransferase compare
Atu2264 -6.4 -12.2 2-isopropylmalate synthase compare
Atu2726 -6.3 -21.7 pyruvate carboxylase compare
Atu3706 -6.2 -8.6 D-3-phosphoglycerate dehydrogenase compare
Atu0099 -6.2 -11.2 prephenate dehydratase compare
Atu1307 -6.2 -8.5 dihydroorotase compare
Atu1308 -6.2 -6.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3885 -6.1 -7.3 inositol monophosphatase compare
Atu2036 -6.1 -14.3 acetolactate synthase III, large subunit compare
Atu1845 -6.0 -4.0 phosphoribosylformylglycinamidine synthase I compare
Atu2709 -6.0 -18.8 3-isopropylmalate dehydratase, large subunit compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu1750 -6.0 -5.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu1688 -5.9 -4.1 indole-3-glycerol-phosphate synthase compare
Atu0030 -5.9 -2.4 phosphocarrier protein HPr compare
Atu2040 -5.9 -5.7 phosphoserine phosphatase compare
Atu0298 -5.9 -8.0 orotidine 5 compare
Atu2718 -5.8 -7.9 homoserine O-succinyltransferase compare
Atu1205 -5.8 -14.0 threonine dehydratase compare
Atu0486 -5.8 -6.5 dihydroorotate dehydrogenase compare
Atu1141 -5.8 -6.7 Phosphoribosylglycinamide synthetase compare
Atu4663 -5.7 -8.9 oligopeptide ABC transporter permease compare
Atu4662 -5.6 -11.2 oligopeptide ABC transporter permease compare
Atu3755 -5.6 -5.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1850 -5.5 -6.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2650 -5.5 -11.1 glycerol-3-phosphate dehydrogenase compare
Atu3783 -5.5 -19.1 glutamate synthase subunit beta compare
Atu3784 -5.3 -29.0 glutamate synthase large subunit compare
Atu0678 -5.2 -7.2 histidyl-tRNA synthetase compare
Atu0537 -5.2 -7.2 histidinol dehydrogenase compare
Atu0400 -5.2 -5.1 orotate phosphoribosyltransferase compare
Atu1588 -5.2 -10.6 homoserine dehydrogenase compare
Atu0679 -5.2 -7.9 ATP phosphoribosyltransferase compare
Atu2747 -5.2 -13.1 hypothetical protein compare
Atu0703 -5.1 -4.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu4659 -4.9 -9.7 AraC family transcriptional regulator compare
Atu0536 -4.9 -7.6 hypothetical protein compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu1359 -4.8 -2.0 dnaK deletion suppressor protein compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu4665 -4.8 -10.5 alpha-galactosidase compare
Atu0017 -4.6 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0399 -4.6 -8.9 dihydroorotase compare
Atu1030 -4.6 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4661 -4.5 -19.2 alpha-galactoside ABC transporter substrate-binding protein compare
Atu0641 -4.4 -4.8 hypothetical protein compare
Atu2790 -4.3 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu4660 -4.3 -15.2 alpha-galactosidase compare
Atu4664 -4.3 -17.5 oligopeptide ABC transporter ATPase compare
Atu2015 -4.1 -14.7 aminotransferase compare
Atu0803 -3.9 -20.2 pyruvate,orthophosphate dikinase compare
Atu1456 -3.7 -14.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1844 -3.7 -3.0 Phosphoribosylformylglycinamidine synthetase compare
Atu0647 -3.6 -6.4 phosphoribosylamine--glycine ligase compare
Atu1454 -3.6 -10.8 siroheme synthase compare
Atu1686 -3.6 -19.3 peptidyl-prolyl cis-trans isomerse D compare
Atu0876 -3.4 -3.5 superoxide dismutase compare
Atu3739 -3.3 -1.9 phosphoglycerate kinase compare
Atu1589 -3.0 -7.0 aminotransferase, class I compare
Atu4097 -3.0 -11.9 L-aspartate oxidase compare
Atu0792 -2.9 -7.8 hypothetical protein compare
Atu3482 -2.9 -11.0 pantoate--beta-alanine ligase compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2548 -2.8 -15.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3469 -2.8 -4.2 phosphoglyceromutase compare
Atu2155 -2.8 -16.9 methionine synthase compare
Atu0502 -2.8 -9.2 acetyl-CoA acetyltransferase compare
Atu4098 -2.7 -16.0 quinolinate synthetase compare
Atu4096 -2.7 -10.9 nicotinate-nucleotide pyrophosphorylase compare
Atu2578 -2.7 -9.4 cAMP-dependent protein kinase regulatory subunit compare
Atu0503 -2.7 -15.4 enoyl-CoA hydratase compare
Atu1463 -2.7 -10.2 glycine cleavage system component H compare
Atu3219 -2.7 -11.7 dihydroxy-acid dehydratase compare
Atu0047 -2.6 -14.5 malate synthase G compare
Atu3483 -2.6 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1455 -2.4 -4.6 hypothetical protein compare
Atu0501 -2.4 -14.6 acyl-CoA dehydrogenase compare
Atu0723 -2.3 -2.5 FAD dependent oxidoreductase compare
Atu1748 -2.2 -11.9 NIFU-like protein compare
Atu1446 -2.2 -3.8 two component response regulator compare
Atu1464 -2.1 -9.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu1462 -2.1 -11.9 glycine cleavage system protein P2 compare
Atu1685 -2.0 -1.6 hypothetical protein compare
Atu6098 -2.0 -1.1 transcriptional regulator, HTH family compare
Atu0434 -2.0 -3.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3731 -2.0 -10.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu0401 -1.9 -5.7 fructokinase compare
Atu2209 -1.9 -3.4 pyrroline-5-carboxylate reductase compare
Atu1113 -1.9 -7.4 dehydrogenase compare
Atu1810 -1.7 -1.9 hypothetical protein compare
Atu3997 -1.7 -12.0 biotin synthetase compare
Atu0322 -1.7 -5.0 enoyl CoA hydratase compare
Atu4773 -1.7 -1.3 two component response regulator compare
Atu0029 -1.7 -6.2 S-adenosylhomocysteine hydrolase compare
Atu2554 -1.6 -3.0 lysyl-tRNA synthetase compare
Atu1457 -1.6 -2.7 hypothetical protein compare
Atu0141 -1.6 -2.5 cytochrome O ubiquinol oxidase subunit I compare
Atu1620 -1.6 -9.7 triosephosphate isomerase compare
Atu5513 -1.6 -1.7 cold shock protein compare
Atu2205 -1.5 -4.4 transcriptional regulator, MarR family compare
Atu0704 -1.5 -8.8 2-dehydro-3-deoxygalactonate kinase compare
Atu0422 -1.5 -1.4 ABC transporter, membrane spanning protein compare
Atu3998 -1.4 -10.4 8-amino-7-oxononanoate synthase compare
Atu8115 -1.4 -3.8 Hypothetical Protein compare
Atu0405 -1.4 -9.6 long-chain-fatty-acid-CoA-ligase compare
Atu0346 -1.3 -3.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0607 -1.3 -9.5 isocitrate lyase compare
Atu2376 -1.3 -1.1 hypothetical protein compare
Atu4711 -1.3 -6.1 two component sensor kinase compare
Atu4000 -1.3 -9.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1891 -1.2 -4.0 cobalamin biosynthesis protein compare
Atu2799 -1.2 -3.2 precorrin-6x reductase compare
Atu2127 -1.2 -6.5 L-carnitine dehydratase compare
Atu3496 -1.2 -3.6 hypothetical protein compare
Atu1604 -1.1 -8.0 poly-beta-hydroxybutyrate synthase compare
Atu3999 -1.1 -3.1 dithiobiotin synthetase compare
Atu0608 -1.1 -6.5 transcriptional regulator compare
Atu6114 -1.1 -2.5 hypothetical protein compare
Atu3289 -1.1 -3.6 thiamine-phosphate pyrophosphorylase compare
Atu4001 -1.1 -5.6 3-oxoacyl-ACP synthase compare
Atu0606 -1.1 -1.8 hypothetical protein compare
Atu2800 -1.1 -2.0 precorrin-3B C17-methyltransferase compare
Atu2795 -1.1 -4.7 cobalamin biosynthetic protein compare
Atu0769 -1.1 -1.7 protoheme IX farnesyltransferase compare
Atu0705 -1.1 -3.9 3-oxoacyl-(acyl carrier protein) reductase compare
Atu2684 -1.1 -1.5 hypothetical protein compare
Atu2267 -1.1 -4.1 hypothetical protein compare
Atu2809 -1.0 -6.4 cobalamin biosynthesis protein compare
Atu2569 -1.0 -6.4 thiamine biosynthesis protein compare
Atu3012 -1.0 -1.4 hypothetical protein compare
Atu2808 -1.0 -4.3 cobyric acid synthase compare
Atu2802 -1.0 -5.4 precorrin-8X methylmutase compare
Atu4187 -1.0 -1.7 tRNA-Met compare
Atu0354 -1.0 -1.8 ferric uptake regulator compare
Atu2796 -1.0 -4.2 precorrin-4 C11-methyltransferase compare
Atu0895 -1.0 -2.6 ABC transporter, substrate binding protein compare
Atu2770 -1.0 -3.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu0419 -1.0 -1.5 two component sensor kinase compare
Atu3121 -1.0 -1.4 cold shock protein compare
Atu3288 -1.0 -4.9 hydroxyethylthiazole kinase compare
Atu3290 -1.0 -5.0 phosphomethylpyrimidine kinase compare
Atu0677 -0.9 -1.6 hypothetical protein compare
Atu2123 -0.9 -4.0 methylenetetrahydrofolate reductase compare
Atu2804 -0.9 -6.8 cobaltochelatase subunit compare
Atu2801 -0.9 -3.4 precorrin-2 C20 methyltransferase compare
Atu1542 -0.9 -3.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2793 -0.9 -4.2 cobyrinic acid a,c-diamide synthase compare
Atu2484 -0.9 -1.7 hypothetical protein compare
Atu2225 -0.9 -5.8 transcriptional regulator compare
Atu3183 -0.9 -1.0 hypothetical protein compare
Atu2286 -0.9 -1.8 hypothetical protein compare
Atu0189 -0.9 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -0.9 -4.8 ABC transporter, substrate binding protein (peptide) compare
Atu3505 -0.8 -4.5 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1705 -0.8 -2.4 SEC-independent protein translocase protein compare
Atu4144 -0.8 -1.1 hypothetical protein compare
Atu2745 -0.8 -6.4 acetyl-coenzyme A synthetase compare
Atu1851 -0.8 -2.2 BolA/YrbA family protein compare
Atu3908 -0.8 -5.6 GntR family transcriptional regulator compare
Atu0687 -0.8 -2.1 hypothetical protein compare
Atu0291 -0.8 -5.0 hypothetical protein compare
Atu2555 -0.8 -3.0 L-lysine 2,3-aminomutase compare
Atu1770 -0.8 -5.1 glutamine synthetase compare
Atu2805 -0.8 -3.3 cobalamin synthesis protein compare
Atu2124 -0.8 -2.9 transcriptional regulator, ArsR family compare
Atu1062 -0.8 -1.5 phosphatidylserine synthase compare
Atu0939 -0.8 -2.2 PemI protein compare
Atu2368 -0.8 -0.9 hypothetical protein compare
Atu3337 -0.8 -4.6 LacI family transcriptional regulator compare
Atu2077 -0.8 -1.9 DNA polymerase III, epsilon subunit compare
Atu1339 -0.8 -1.8 ribonuclease E compare
Atu0339 -0.8 -2.3 hypothetical protein compare
Atu4505 -0.8 -3.6 LacI family transcriptional regulator compare
Atu1260 -0.8 -1.3 hypothetical protein compare
Atu2798 -0.8 -2.8 precorrin-6y methyltransferase compare
Atu0107 -0.7 -1.5 hypothetical protein compare
Atu1677 -0.7 -2.4 queuine tRNA-ribosyltransferase compare
Atu2746 -0.7 -2.6 hypothetical protein compare
Atu2207 -0.7 -2.5 two component sensor kinase compare
Atu8018 -0.7 -0.8 hypothetical protein compare
Atu1021 -0.7 -1.2 outer membrane protein compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu2432 -0.7 -1.5 hypothetical protein compare
Atu3207 -0.7 -5.0 diguanylate cyclase compare
Atu4346 -0.7 -2.0 hypothetical protein compare
Atu1847 -0.7 -1.5 hypothetical protein compare
Atu6189 -0.7 -0.9 protein secretion chaperone compare
Atu2020 -0.7 -1.9 transcriptional regulator, TetR family compare
Atu3668 -0.7 -1.7 siderophore biosynthesis protein compare
Atu8099 -0.7 -1.1 hypothetical protein compare
Atu3280 -0.7 -3.4 GntR family transcriptional regulator compare
Atu1028 -0.7 -1.5 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Stachyose hydrate in Agrobacterium fabrum C58

For carbon source Stachyose hydrate across organisms