Experiment set2IT058 for Pseudomonas simiae WCS417

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -5.2 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_18600 -4.8 -4.7 isopropylmalate isomerase compare
PS417_00185 -4.1 -4.0 tryptophan synthase subunit beta compare
PS417_23800 -4.0 -9.3 ketol-acid reductoisomerase compare
PS417_04420 -3.8 -9.7 histidinol dehydrogenase compare
PS417_01575 -3.7 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27835 -3.7 -6.4 endoribonuclease compare
PS417_05595 -3.6 -10.7 ornithine carbamoyltransferase compare
PS417_04415 -3.6 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23810 -3.6 -13.2 acetolactate synthase 3 catalytic subunit compare
PS417_25725 -3.5 -13.5 anthranilate synthase component I compare
PS417_01565 -3.4 -7.3 imidazole glycerol phosphate synthase compare
PS417_18560 -3.4 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18585 -3.3 -6.3 3-isopropylmalate dehydrogenase compare
PS417_27040 -3.2 -5.1 3-phosphoglycerate dehydrogenase compare
PS417_18595 -3.1 -5.1 3-isopropylmalate dehydratase compare
PS417_01850 -3.1 -8.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02510 -3.1 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26745 -3.1 -6.1 methionine biosynthesis protein MetW compare
PS417_20985 -3.0 -3.6 porin compare
PS417_25710 -3.0 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_16465 -3.0 -10.2 sirohydrochlorin ferrochelatase compare
PS417_02005 -3.0 -10.9 glutamate synthase compare
PS417_25720 -3.0 -7.9 anthranilate synthase component II compare
PS417_27195 -2.9 -1.7 N-acetylglutamate synthase compare
PS417_24745 -2.8 -4.7 gamma-glutamyl phosphate reductase compare
PS417_26740 -2.7 -7.4 homoserine acetyltransferase compare
PS417_23995 -2.7 -1.2 preprotein translocase subunit SecG compare
PS417_18530 -2.7 -6.4 O-succinylhomoserine sulfhydrylase compare
PS417_27795 -2.6 -1.7 orotate phosphoribosyltransferase compare
PS417_14200 -2.5 -2.6 hypothetical protein compare
PS417_05100 -2.5 -2.8 RNA polymerase sigma factor compare
PS417_26890 -2.5 -5.6 dihydroxy-acid dehydratase compare
PS417_00180 -2.3 -2.8 tryptophan synthase subunit alpha compare
PS417_09325 -2.3 -6.1 peptidase S41 compare
PS417_05090 -2.3 -7.1 ferric citrate outer membrane transporter (fecA) (from data) conserved
PS417_08125 -2.3 -1.4 prephenate dehydratase compare
PS417_26730 -2.3 -1.5 pyrroline-5-carboxylate reductase compare
PS417_09915 -2.2 -2.3 hypothetical protein compare
PS417_25715 -2.2 -4.8 anthranilate phosphoribosyltransferase compare
PS417_01580 -2.2 -1.8 imidazole glycerol phosphate synthase compare
PS417_08220 -2.2 -1.4 epimerase compare
PS417_01605 -2.1 -2.0 phosphoglycerate mutase compare
PS417_20610 -2.1 -1.8 hypothetical protein compare
PS417_24155 -2.0 -2.7 ATP-binding protein compare
PS417_02000 -2.0 -10.2 glutamate synthase compare
PS417_02415 -2.0 -5.3 phosphoserine phosphatase compare
PS417_12290 -1.9 -7.4 sulfite reductase compare
PS417_13510 -1.9 -1.8 polyketide cyclase compare
PS417_08130 -1.8 -2.4 aspartate aminotransferase compare
PS417_24835 -1.8 -4.6 hypothetical protein compare
PS417_08335 -1.7 -1.6 hypothetical protein compare
PS417_23110 -1.7 -5.0 2-isopropylmalate synthase compare
PS417_20125 -1.6 -4.0 phosphoribosylglycinamide formyltransferase compare
PS417_24585 -1.6 -8.3 AMP nucleosidase compare
PS417_26815 -1.5 -2.5 peptidase M16 compare
PS417_00175 -1.4 -1.4 CigR compare
PS417_20160 -1.4 -3.5 cysteine synthase compare
PS417_05500 -1.4 -4.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_06375 -1.4 -1.2 deoxycytidine triphosphate deaminase compare
PS417_08245 -1.4 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_13050 -1.3 -2.4 N-acetylglucosamine-6-sulfatase compare
PS417_13375 -1.3 -6.9 LysR family transcriptional regulator compare
PS417_21515 -1.3 -7.1 transcriptional regulator compare
PS417_23805 -1.3 -3.2 acetolactate synthase 3 regulatory subunit compare
PS417_09235 -1.3 -1.1 molecular chaperone compare
PS417_01290 -1.2 -2.0 ADP-ribose diphosphatase compare
PS417_18105 -1.2 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_02725 -1.2 -3.1 hypothetical protein compare
PS417_22670 -1.2 -7.0 AraC family transcriptional regulator compare
PS417_01560 -1.2 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_13820 -1.2 -5.0 UDP-glucose 6-dehydrogenase compare
PS417_26990 -1.2 -1.5 RNA pyrophosphohydrolase compare
PS417_23170 -1.1 -1.8 FeS assembly protein IscX compare
PS417_13800 -1.1 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23770 -1.1 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_27475 -1.1 -2.2 membrane protein compare
PS417_01570 -1.1 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_10645 -1.1 -8.2 magnesium ABC transporter ATPase compare
PS417_26645 -1.1 -2.4 chemotaxis protein compare
PS417_24705 -1.1 -3.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_18395 -1.1 -2.0 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_13165 -1.1 -2.4 peroxidase compare
PS417_21700 -1.1 -2.5 arginine N-succinyltransferase compare
PS417_21705 -1.1 -3.3 arginine N-succinyltransferase compare
PS417_14940 -1.0 -1.8 LysR family transcriptional regulator compare
PS417_08230 -1.0 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23390 -1.0 -4.7 ubiquinol oxidase subunit II compare
PS417_08225 -1.0 -3.6 acetolactate synthase compare
PS417_27245 -1.0 -3.4 aminotransferase DegT compare
PS417_13990 -0.9 -1.9 LysR family transcriptional regulator compare
PS417_26820 -0.9 -5.4 peptidase M16 compare
PS417_22375 -0.9 -0.8 cold-shock protein compare
PS417_05505 -0.9 -5.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_06635 -0.9 -1.3 ferredoxin compare
PS417_02555 -0.9 -7.0 exoribonuclease R compare
PS417_12855 -0.9 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20480 -0.9 -2.7 hypothetical protein compare
PS417_21125 -0.9 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_20665 -0.9 -3.9 hypothetical protein compare
PS417_17840 -0.9 -2.0 betaine-aldehyde dehydrogenase compare
PS417_06530 -0.9 -1.7 membrane protein compare
PS417_01995 -0.9 -1.4 hypothetical protein compare
PS417_13795 -0.8 -4.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_08465 -0.8 -1.8 elongation factor GreAB compare
PS417_10265 -0.8 -2.2 peptidase compare
PS417_16005 -0.8 -2.6 ATPase compare
PS417_27875 -0.8 -3.7 histidine kinase compare
PS417_27585 -0.8 -1.8 diaminopimelate epimerase compare
PS417_07985 -0.8 -1.0 AbrB family transcriptional regulator compare
PS417_08580 -0.8 -3.7 histidine kinase compare
PS417_10245 -0.8 -1.3 hypothetical protein compare
PS417_13790 -0.8 -2.4 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_05365 -0.8 -1.1 FAD-binding protein compare
PS417_21690 -0.8 -3.2 N-succinylarginine dihydrolase compare
PS417_13055 -0.8 -1.7 aminotransferase compare
PS417_08410 -0.8 -1.8 hypothetical protein compare
PS417_02770 -0.8 -2.0 membrane protein compare
PS417_28020 -0.8 -1.9 chorismate--pyruvate lyase compare
PS417_00455 -0.7 -1.3 hypothetical protein compare
PS417_05040 -0.7 -2.2 amino acid dehydrogenase compare
PS417_06500 -0.7 -1.1 hypothetical protein compare
PS417_13255 -0.7 -1.6 ABC transporter compare
PS417_11900 -0.7 -3.0 conjugal transfer protein TraR compare
PS417_21270 -0.7 -1.1 translation initiation factor 2 compare
PS417_23775 -0.7 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_05345 -0.7 -2.7 exotoxin compare
PS417_23900 -0.7 -4.7 poly(A) polymerase compare
PS417_19805 -0.7 -2.0 flagellar M-ring protein FliF compare
PS417_01145 -0.7 -0.8 taurine transporter ATP-binding subunit compare
PS417_19955 -0.7 -1.2 hypothetical protein compare
PS417_07640 -0.7 -1.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_14655 -0.7 -1.0 lysine transporter LysE compare
PS417_23385 -0.7 -3.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_04595 -0.7 -1.9 cell division protein MraZ compare
PS417_21725 -0.7 -2.3 amino acid transporter compare
PS417_08545 -0.7 -1.1 aromatic ring-opening dioxygenase LigB compare
PS417_16475 -0.7 -1.9 camphor resistance protein CrcB compare
PS417_24935 -0.7 -0.6 hypothetical protein compare
PS417_11810 -0.7 -1.7 oxidoreductase compare
PS417_22385 -0.7 -5.0 quinolinate synthase A compare
PS417_23545 -0.7 -0.9 gamma-glutamyl kinase compare
PS417_14255 -0.7 -1.0 phosphate import ATP-binding protein PstB compare
PS417_15585 -0.7 -2.0 DNA repair nucleotidyltransferase compare
PS417_01965 -0.7 -1.1 fimbriae biosynthesis protein compare
PS417_10655 -0.7 -1.3 LuxR family transcriptional regulator compare
PS417_07160 -0.7 -3.7 glycine cleavage system protein R compare
PS417_17155 -0.7 -2.0 cytochrome B561 compare
PS417_15135 -0.7 -0.9 hypothetical protein compare
PS417_28075 -0.7 -3.3 phosphate ABC transporter permease compare
PS417_17515 -0.6 -2.5 GfdT protein compare
PS417_19630 -0.6 -1.6 LuxR family transcriptional regulator compare
PS417_11375 -0.6 -1.9 hypothetical protein compare
PS417_12325 -0.6 -2.3 precorrin-4 C11-methyltransferase compare
PS417_24840 -0.6 -1.2 hypothetical protein compare
PS417_27605 -0.6 -2.2 hypothetical protein compare
PS417_27300 -0.6 -0.7 cell division protein ZapA compare
PS417_03260 -0.6 -1.4 5S ribosomal RNA compare
PS417_20670 -0.6 -3.2 glycosyl transferase family 2 compare
PS417_25705 -0.6 -1.5 lipoate--protein ligase compare
PS417_15910 -0.6 -2.1 lysine transporter LysE compare
PS417_18740 -0.6 -2.2 acetyltransferase compare
PS417_11770 -0.6 -1.2 pyruvate dehydrogenase compare
PS417_27435 -0.6 -2.9 polyphosphate kinase compare
PS417_15655 -0.6 -2.5 hypothetical protein compare
PS417_19600 -0.6 -0.9 exonuclease compare
PS417_21730 -0.6 -2.1 peptidase M14 compare
PS417_06945 -0.6 -0.9 membrane protein compare
PS417_24530 -0.6 -2.5 ABC transporter substrate-binding protein compare
PS417_20655 -0.6 -3.7 group 1 glycosyl transferase compare
PS417_26650 -0.6 -3.5 histidine kinase compare
PS417_03190 -0.6 -1.3 antibiotic biosynthesis monooxygenase compare
PS417_06245 -0.6 -1.2 zinc metallopeptidase RseP compare
PS417_10445 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_14075 -0.6 -1.1 hypothetical protein compare
PS417_10335 -0.6 -1.5 peroxiredoxin compare
PS417_12155 -0.6 -2.3 transporter compare
PS417_05025 -0.6 -1.1 maleylacetoacetate isomerase compare
PS417_12840 -0.6 -1.6 TetR family transcriptional regulator compare
PS417_07540 -0.6 -1.3 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_17035 -0.6 -0.8 Cro/Cl family transcriptional regulator compare
PS417_17510 -0.6 -3.9 histidine kinase compare
PS417_01715 -0.6 -0.8 hypothetical protein compare
PS417_12735 -0.6 -1.0 peroxidase compare
PS417_05520 -0.6 -3.4 histidine kinase compare
PS417_13805 -0.6 -3.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_28080 -0.6 -4.0 phosphate ABC transporter permease compare
PS417_01095 -0.6 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_01815 -0.5 -1.7 peptide ABC transporter ATP-binding protein compare
PS417_06730 -0.5 -0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01030 -0.5 -0.8 glutamine ABC transporter substrate-binding protein compare
PS417_20635 -0.5 -0.6 ABC transporter ATP-binding protein compare
PS417_22570 -0.5 -0.6 H-NS histone compare
PS417_14780 -0.5 -2.3 GNAT family acetyltraansferase compare
PS417_12595 -0.5 -1.1 transcriptional regulator compare
PS417_05130 -0.5 -1.4 glutaredoxin compare
PS417_12635 -0.5 -1.9 alkanesulfonate monooxygenase compare
PS417_12515 -0.5 -1.3 lactate dehydrogenase compare
PS417_24575 -0.5 -0.8 hypothetical protein compare
PS417_23380 -0.5 -1.1 cytochrome o ubiquinol oxidase subunit III compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas simiae WCS417

For carbon source Trisodium citrate dihydrate across organisms