| | gene | name | fitness | t score | description | |
|---|
| b1070 | flgN | -3.2 | -1.5 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4585 | sroB | -3.0 | -1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b2258 | b2258 | -3.0 | -1.4 | putative transport/receptor protein (VIMSS) | compare |
| b4603 | rseX | -2.8 | -1.3 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0249 | ykfF | -2.7 | -1.7 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3082 | ygjM | -2.6 | -2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1765 | ydjA | -2.5 | -1.1 | predicted oxidoreductase (NCBI) | compare |
| b1161 | ycgX | -2.5 | -2.4 | hypothetical protein (NCBI) | compare |
| b4402 | yjjY | -2.4 | -1.6 | hypothetical protein (NCBI) | compare |
| b1514 | lsrC | -2.3 | -2.1 | AI2 transporter (NCBI) | compare |
| b2597 | yfiA | -2.3 | -1.9 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1576 | ydfD | -2.3 | -3.3 | Qin prophage; predicted protein (NCBI) | compare |
| b3021 | ygiT | -2.2 | -4.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1074 | flgC | -2.2 | -2.0 | flagellar basal-body rod protein C (NCBI) | compare |
| b1977 | asnT | -2.1 | -2.3 | tRNA-Asn (NCBI) | compare |
| b2567 | rnc | -2.1 | -1.9 | ribonuclease III (NCBI) | compare |
| b2330 | yfcB | -2.1 | -2.7 | putative adenine-specific methylase (VIMSS) | compare |
| b0881 | clpS | -2.0 | -2.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b1130 | phoP | -1.8 | -5.4 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1357 | ydaS | -1.8 | -2.3 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0737 | tolQ | -1.8 | -3.4 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1273 | yciN | -1.8 | -2.3 | hypothetical protein (NCBI) | compare |
| b4426 | isrA | -1.8 | -3.0 | unknown RNA (NCBI) | compare |
| b1286 | rnb | -1.8 | -3.0 | exoribonuclease II (NCBI) | compare |
| b0357 | yaiN | -1.8 | -2.2 | putative alpha helix chain (VIMSS) | compare |
| b1263 | trpD | -1.7 | -2.1 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b3163 | nlpI | -1.7 | -3.9 | hypothetical protein (NCBI) | compare |
| b3725 | pstB | -1.7 | -2.4 | phosphate transporter subunit (NCBI) | compare |
| b1842 | holE | -1.7 | -2.3 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3636 | rpmG | -1.7 | -2.1 | 50S ribosomal protein L33 (NCBI) | compare |
| b1515 | lsrD | -1.6 | -3.2 | AI2 transporter (NCBI) | compare |
| b1013 | ycdC | -1.6 | -2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2617 | smpA | -1.6 | -3.1 | small membrane protein A (VIMSS) | compare |
| b2024 | hisA | -1.6 | -2.3 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b4045 | yjbJ | -1.5 | -1.6 | predicted stress response protein (NCBI) | compare |
| b3504 | yhiS | -1.5 | -2.7 | hypothetical protein (RefSeq) | compare |
| b1383 | ydbL | -1.5 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1358 | ydaT | -1.5 | -1.3 | Rac prophage; predicted protein (NCBI) | compare |
| b1480 | sra | -1.5 | -1.9 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b2614 | grpE | -1.5 | -0.9 | heat shock protein (NCBI) | compare |
| b4538 | yoeF | -1.5 | -1.3 | hypothetical protein (RefSeq) | compare |
| b3035 | tolC | -1.4 | -6.3 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b2518 | ndk | -1.4 | -2.0 | nucleoside diphosphate kinase (NCBI) | compare |
| b1984 | asnW | -1.4 | -1.1 | tRNA-Asn (NCBI) | compare |
| b1531 | marA | -1.4 | -2.5 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b3164 | pnp | -1.4 | -2.1 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2820 | recB | -1.4 | -2.2 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b1644 | b1644 | -1.4 | -3.2 | putative membrane protein (VIMSS) | compare |
| b1545 | pinQ | -1.4 | -1.2 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b4436 | ryeC | -1.4 | -1.2 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2055 | wcaE | -1.3 | -2.6 | predicted glycosyl transferase (NCBI) | compare |
| b3842 | rfaH | -1.3 | -3.8 | transcriptional activator RfaH (NCBI) | compare |
| b2287 | nuoB | -1.3 | -2.6 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1612 | fumA | -1.3 | -3.0 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b3871 | bipA | -1.3 | -7.0 | GTP-binding protein (NCBI) | compare |
| b4631 | ykgQ | -1.3 | -1.1 | no description | compare |
| b0145 | dksA | -1.3 | -2.7 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1778 | yeaA | -1.3 | -1.6 | methionine sulfoxide reductase B (NCBI) | compare |
| b0404 | yajB | -1.3 | -2.9 | hypothetical protein (NCBI) | compare |
| b1382 | ynbE | -1.2 | -1.4 | predicted lipoprotein (NCBI) | compare |
| b1129 | phoQ | -1.2 | -4.9 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1063 | yceB | -1.2 | -2.1 | predicted lipoprotein (NCBI) | compare |
| b0463 | acrA | -1.2 | -5.4 | multidrug efflux system (NCBI) | compare |
| b1086 | rluC | -1.2 | -4.1 | 23S rRNA pseudouridylate synthase (NCBI) | conserved |
| b2506 | yfgI | -1.2 | -1.6 | hypothetical protein (NCBI) | compare |
| b1685 | ydiH | -1.2 | -1.0 | predicted protein (RefSeq) | compare |
| b0605 | ahpC | -1.2 | -3.5 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3120 | yhaB | -1.2 | -3.5 | orf, hypothetical protein (VIMSS) | compare |
| b1942 | fliJ | -1.2 | -1.2 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3741 | gidA | -1.2 | -5.5 | glucose-inhibited division protein A (NCBI) | compare |
| b2990 | hybG | -1.2 | -1.6 | hydrogenase 2 accessory protein (NCBI) | compare |
| b4458 | oxyS | -1.2 | -0.9 | global regulatory RNA (NCBI) | compare |
| b1598 | ydgD | -1.2 | -3.9 | predicted peptidase (NCBI) | compare |
| b4550 | yhdL | -1.1 | -3.1 | hypothetical protein (NCBI) | compare |
| b4179 | vacB | -1.1 | -5.3 | putative enzyme (VIMSS) | compare |
| b2969 | yghE | -1.1 | -2.2 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b1953 | b1953 | -1.1 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2699 | recA | -1.1 | -1.6 | recombinase A (NCBI) | compare |
| b1591 | b1591 | -1.1 | -1.6 | putative oxidoreductase component (VIMSS) | compare |
| b2279 | nuoK | -1.1 | -1.3 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2804 | fucU | -1.1 | -2.2 | L-fucose mutarotase (NCBI) | compare |
| b3463 | ftsE | -1.1 | -3.2 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2025 | hisF | -1.1 | -2.5 | imidazole glycerol phosphate synthase subunit HisF (NCBI) | compare |
| b1822 | rrmA | -1.1 | -1.8 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1008 | ycdI | -1.1 | -2.4 | hypothetical protein (NCBI) | compare |
| b1547 | stfQ | -1.1 | -2.7 | Qin prophage; predicted side tail fibre assembly protein (NCBI) | compare |
| b0462 | acrB | -1.1 | -6.8 | multidrug efflux system protein (NCBI) | compare |
| b1533 | ydeD | -1.1 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3121 | yhaC | -1.1 | -1.7 | hypothetical protein (NCBI) | compare |
| b0547 | ybcN | -1.1 | -2.3 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1792 | yeaO | -1.1 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0178 | hlpA | -1.1 | -2.3 | periplasmic chaperone (NCBI) | compare |
| b0957 | ompA | -1.1 | -2.7 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b1818 | manY | -1.0 | -1.6 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1085 | b1085 | -1.0 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4573 | insZ | -1.0 | -2.6 | no description | compare |
| b3462 | ftsX | -1.0 | -4.4 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1347 | ydaC | -1.0 | -1.3 | Rac prophage; predicted protein (NCBI) | compare |
| b1120 | cobB | -1.0 | -2.5 | deacetylase of acs and cheY, regulates chemotaxis (NCBI) | compare |
| b3784 | rfe | -1.0 | -6.0 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b2189 | proL | -1.0 | -1.3 | tRNA-Pro (NCBI) | compare |
| b0500 | ybbD | -1.0 | -0.9 | hypothetical protein (RefSeq) | compare |
| b3026 | qseC | -1.0 | -3.3 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0429 | cyoD | -1.0 | -2.7 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b1351 | racC | -1.0 | -2.3 | Rac prophage; predicted protein (NCBI) | compare |
| b2058 | wcaB | -1.0 | -0.7 | predicted acyl transferase (NCBI) | compare |
| b4613 | dinQ | -1.0 | -1.0 | Damage inducible, function unknown (RefSeq) | compare |
| b1647 | ydhF | -1.0 | -2.4 | predicted oxidoreductase (NCBI) | compare |
| b3068 | ygjF | -1.0 | -1.5 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b1388 | paaA | -1.0 | -2.3 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1317 | ycjU | -1.0 | -2.2 | predicted beta-phosphoglucomutase (NCBI) | compare |
| b4589 | ylcI | -1.0 | -1.8 | hypothetical protein (RefSeq) | compare |
| b2650 | ypjC | -1.0 | -1.6 | hypothetical protein (RefSeq) | compare |
| b1147 | ymfL | -1.0 | -1.5 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2512 | yfgL | -1.0 | -2.8 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3726 | pstA | -0.9 | -4.0 | phosphate transporter subunit (NCBI) | compare |
| b3728 | pstS | -0.9 | -3.0 | phosphate transporter subunit (NCBI) | compare |
| b2277 | nuoM | -0.9 | -3.6 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2447 | yffP | -0.9 | -2.4 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1257 | yciE | -0.9 | -1.6 | hypothetical protein (NCBI) | compare |
| b0560 | nohB | -0.9 | -1.3 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b1361 | ydaW | -0.9 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2188 | yejM | -0.9 | -4.1 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0729 | sucD | -0.9 | -1.9 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b0440 | hupB | -0.9 | -2.4 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b1513 | lsrA | -0.9 | -1.9 | fused AI2 transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3098 | yqjD | -0.9 | -1.5 | hypothetical protein (NCBI) | compare |
| b2980 | glcC | -0.9 | -2.9 | DNA-binding transcriptional dual regulator, glycolate-binding (NCBI) | compare |
| b2064 | asmA | -0.9 | -3.1 | predicted assembly protein (NCBI) | compare |
| b3652 | recG | -0.9 | -4.7 | ATP-dependent DNA helicase (NCBI) | compare |
| b1656 | sodB | -0.9 | -1.7 | superoxide dismutase, Fe (NCBI) | compare |
| b0013 | yaaI | -0.9 | -3.0 | hypothetical protein (NCBI) | compare |
| b4155 | yjeA | -0.9 | -0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b4454 | rdlD | -0.9 | -2.8 | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD (RefSeq) | compare |
| b3706 | trmE | -0.9 | -3.7 | tRNA modification GTPase (NCBI) | compare |
| b1344 | ydaO | -0.9 | -2.1 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2822 | recC | -0.9 | -3.0 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b4407 | thiS | -0.9 | -1.2 | sulfur carrier protein ThiS (NCBI) | compare |
| b3414 | gntY | -0.9 | -2.9 | predicted gluconate transport associated protein (NCBI) | compare |
| b0739 | tolA | -0.9 | -2.5 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1752 | ydjZ | -0.9 | -1.2 | conserved inner membrane protein (NCBI) | compare |
| b1434 | ydcN | -0.9 | -1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1650 | nemA | -0.9 | -1.9 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b4685 | yrbN | -0.9 | -1.5 | expressed protein (RefSeq) | compare |
| b2236 | yfaE | -0.8 | -1.7 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3195 | yrbF | -0.8 | -4.5 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0580 | ybdJ | -0.8 | -1.4 | predicted inner membrane protein (NCBI) | compare |
| b4648 | ysaC | -0.8 | -1.8 | no description | compare |
| b1658 | purR | -0.8 | -2.7 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b4462 | ygaQ | -0.8 | -4.3 | hypothetical protein (RefSeq) | compare |
| b0232 | yafN | -0.8 | -0.8 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2569 | lepA | -0.8 | -2.5 | GTP-binding protein LepA (NCBI) | compare |
| b3630 | rfaP | -0.8 | -5.3 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1368 | ynaA | -0.8 | -2.2 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b0976 | hyaE | -0.8 | -1.8 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b1739 | osmE | -0.8 | -1.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b1290 | sapF | -0.8 | -1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4679 | yohP | -0.8 | -1.8 | expressed protein (RefSeq) | compare |
| b0603 | ybdO | -0.8 | -2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3778 | rep | -0.8 | -4.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3863 | polA | -0.8 | -0.8 | DNA polymerase I (NCBI) | compare |
| b1297 | b1297 | -0.8 | -3.3 | putative glutamine synthetase (EC 6.3.1.2) (VIMSS) | compare |
| b3194 | yrbE | -0.8 | -4.7 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3632 | rfaQ | -0.8 | -6.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2713 | hydN | -0.8 | -3.3 | formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit (NCBI) | compare |
| b0842 | cmr | -0.8 | -3.4 | multidrug efflux system protein (NCBI) | compare |
| b3193 | yrbD | -0.8 | -4.1 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0279 | yagM | -0.8 | -2.8 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b0721 | sdhC | -0.8 | -1.9 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b0949 | uup | -0.8 | -3.3 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0617 | citD | -0.8 | -1.4 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2051 | wcaH | -0.8 | -1.0 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b4375 | prfC | -0.8 | -3.5 | peptide chain release factor 3 (NCBI) | compare |
| b2457 | cchA | -0.8 | -1.6 | detox protein (VIMSS) | compare |
| b4279 | yjhB | -0.8 | -2.3 | putative transport protein (VIMSS) | compare |
| b1830 | prc | -0.8 | -2.8 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b4444 | rygA | -0.7 | -1.8 | unknown RNA (NCBI) | compare |
| b1113 | ycfS | -0.7 | -2.0 | hypothetical protein (NCBI) | compare |
| b3613 | yibP | -0.7 | -2.6 | putative membrane protein (VIMSS) | compare |
| b2026 | hisI | -0.7 | -3.2 | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI) | compare |
| b3192 | yrbC | -0.7 | -4.1 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b2510 | b2510 | -0.7 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2213 | ada | -0.7 | -1.3 | fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase (NCBI) | compare |
| b2017 | yefM | -0.7 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3844 | fre | -0.7 | -2.4 | NAD(P)H-flavin reductase (NCBI) | compare |
| b2278 | nuoL | -0.7 | -4.0 | NADH dehydrogenase subunit L (NCBI) | compare |
| b4527 | b1354 | -0.7 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4418 | sraB | -0.7 | -0.9 | unknown RNA (NCBI) | compare |
| b3442 | yhhZ | -0.7 | -1.2 | hypothetical protein (NCBI) | compare |
| b3839 | tatC | -0.7 | -3.8 | TatABCE protein translocation system subunit (NCBI) | compare |
| b1164 | ycgZ | -0.7 | -1.3 | hypothetical protein (NCBI) | compare |
| b4414 | tff | -0.7 | -1.3 | unknown RNA (NCBI) | compare |
| b1160 | elbA | -0.7 | -1.1 | hypothetical protein (NCBI) | compare |
| b1563 | relE | -0.7 | -0.8 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b3207 | yrbL | -0.7 | -3.1 | hypothetical protein (NCBI) | compare |
| b4243 | yjgF | -0.7 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3787 | rffD | -0.7 | -4.0 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b4041 | plsB | -0.7 | -1.0 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b3884 | yihW | -0.7 | -3.1 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b0766 | ybhA | -0.7 | -2.6 | predicted hydrolase (NCBI) | compare |