Experiment set2IT058 for Agrobacterium fabrum C58

Compare to:

Stachyose hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu2791 -7.7 -5.4 3-isopropylmalate dehydrogenase compare
Atu0099 -7.5 -7.3 prephenate dehydratase compare
Atu1750 -7.2 -6.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -7.2 -8.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1308 -7.1 -6.9 aspartate carbamoyl transferase catalytic subunit compare
Atu2264 -7.0 -9.6 2-isopropylmalate synthase compare
Atu1075 -6.9 -4.8 amidophosphoribosyltransferase compare
Atu0432 -6.8 -8.1 O-succinylhomoserine sulfhydrylase compare
Atu0703 -6.7 -4.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1588 -6.7 -8.0 homoserine dehydrogenase compare
Atu2709 -6.7 -16.2 3-isopropylmalate dehydratase, large subunit compare
Atu3706 -6.6 -6.5 D-3-phosphoglycerate dehydrogenase compare
Atu2726 -6.4 -20.8 pyruvate carboxylase compare
Atu1850 -6.3 -6.1 phosphoribosylformylglycinamidine synthetase II compare
Atu0400 -6.3 -6.1 orotate phosphoribosyltransferase compare
Atu2289 -6.3 -18.1 anthranilate synthase component I and II compare
Atu2650 -6.2 -12.0 glycerol-3-phosphate dehydrogenase compare
Atu2036 -6.2 -15.6 acetolactate synthase III, large subunit compare
Atu1687 -6.2 -11.8 anthranilate phosphoribosyltransferase compare
Atu3783 -6.0 -17.7 glutamate synthase subunit beta compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu1688 -6.0 -4.1 indole-3-glycerol-phosphate synthase compare
Atu1845 -6.0 -4.4 phosphoribosylformylglycinamidine synthase I compare
Atu0679 -5.9 -7.1 ATP phosphoribosyltransferase compare
Atu0030 -5.9 -2.5 phosphocarrier protein HPr compare
Atu0017 -5.9 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0876 -5.8 -4.0 superoxide dismutase compare
Atu2718 -5.8 -9.7 homoserine O-succinyltransferase compare
Atu4665 -5.7 -9.6 alpha-galactosidase compare
Atu0486 -5.7 -6.7 dihydroorotate dehydrogenase compare
Atu0399 -5.6 -6.6 dihydroorotase compare
Atu1844 -5.5 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu1205 -5.5 -13.8 threonine dehydratase compare
Atu3885 -5.4 -10.4 inositol monophosphatase compare
Atu0298 -5.4 -8.3 orotidine 5 compare
Atu0537 -5.3 -7.2 histidinol dehydrogenase compare
Atu0678 -5.3 -6.3 histidyl-tRNA synthetase compare
Atu1307 -5.2 -7.8 dihydroorotase compare
Atu0647 -5.2 -6.2 phosphoribosylamine--glycine ligase compare
Atu2790 -5.2 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu3784 -5.1 -26.6 glutamate synthase large subunit compare
Atu2747 -5.1 -13.2 hypothetical protein compare
Atu0038 -5.1 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -5.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu2040 -4.9 -6.7 phosphoserine phosphatase compare
Atu4661 -4.9 -20.9 alpha-galactoside ABC transporter substrate-binding protein compare
Atu4663 -4.8 -10.7 oligopeptide ABC transporter permease compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1141 -4.8 -9.7 Phosphoribosylglycinamide synthetase compare
Atu1140 -4.8 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4662 -4.7 -10.8 oligopeptide ABC transporter permease compare
Atu0803 -4.6 -20.3 pyruvate,orthophosphate dikinase compare
Atu0536 -4.5 -11.2 hypothetical protein compare
Atu4659 -4.5 -11.0 AraC family transcriptional regulator compare
Atu3755 -4.4 -7.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1446 -4.3 -4.2 two component response regulator compare
Atu2015 -4.2 -15.6 aminotransferase compare
Atu4660 -4.1 -13.4 alpha-galactosidase compare
Atu1456 -4.0 -14.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1686 -3.8 -16.0 peptidyl-prolyl cis-trans isomerse D compare
Atu1454 -3.7 -11.7 siroheme synthase compare
Atu4664 -3.7 -12.4 oligopeptide ABC transporter ATPase compare
Atu0641 -3.6 -5.4 hypothetical protein compare
Atu1030 -3.4 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -3.3 -2.0 dnaK deletion suppressor protein compare
Atu4098 -3.2 -13.4 quinolinate synthetase compare
Atu3739 -3.2 -4.4 phosphoglycerate kinase compare
Atu2548 -3.2 -16.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1455 -3.2 -3.7 hypothetical protein compare
Atu1589 -3.1 -6.4 aminotransferase, class I compare
Atu4096 -3.1 -10.6 nicotinate-nucleotide pyrophosphorylase compare
Atu0041 -3.1 -3.7 glutamine amidotransferase compare
Atu2578 -3.1 -7.0 cAMP-dependent protein kinase regulatory subunit compare
Atu2155 -3.0 -18.9 methionine synthase compare
Atu0047 -3.0 -15.1 malate synthase G compare
Atu0501 -2.9 -15.7 acyl-CoA dehydrogenase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0502 -2.8 -9.6 acetyl-CoA acetyltransferase compare
Atu0434 -2.8 -4.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4097 -2.8 -13.0 L-aspartate oxidase compare
Atu3219 -2.7 -14.6 dihydroxy-acid dehydratase compare
Atu0503 -2.7 -15.0 enoyl-CoA hydratase compare
Atu3483 -2.7 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3482 -2.7 -8.7 pantoate--beta-alanine ligase compare
Atu1810 -2.6 -2.2 hypothetical protein compare
Atu3731 -2.6 -10.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0792 -2.6 -9.0 hypothetical protein compare
Atu0723 -2.5 -2.4 FAD dependent oxidoreductase compare
Atu3469 -2.5 -4.0 phosphoglyceromutase compare
Atu1463 -2.5 -10.0 glycine cleavage system component H compare
Atu1748 -2.2 -6.5 NIFU-like protein compare
Atu1620 -2.1 -12.2 triosephosphate isomerase compare
Atu1462 -2.1 -11.2 glycine cleavage system protein P2 compare
Atu1464 -2.1 -7.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu0322 -2.0 -9.6 enoyl CoA hydratase compare
Atu0029 -1.9 -7.2 S-adenosylhomocysteine hydrolase compare
Atu2209 -1.8 -5.2 pyrroline-5-carboxylate reductase compare
Atu3997 -1.8 -10.8 biotin synthetase compare
Atu3763 -1.8 -1.9 hypothetical protein compare
Atu0401 -1.6 -7.1 fructokinase compare
Atu8115 -1.6 -4.0 Hypothetical Protein compare
Atu0704 -1.6 -9.5 2-dehydro-3-deoxygalactonate kinase compare
Atu1113 -1.6 -5.8 dehydrogenase compare
Atu3999 -1.6 -3.7 dithiobiotin synthetase compare
Atu4773 -1.5 -2.1 two component response regulator compare
Atu2205 -1.5 -3.8 transcriptional regulator, MarR family compare
Atu3998 -1.4 -8.3 8-amino-7-oxononanoate synthase compare
Atu1457 -1.4 -2.4 hypothetical protein compare
Atu6098 -1.4 -1.0 transcriptional regulator, HTH family compare
Atu0607 -1.4 -10.2 isocitrate lyase compare
Atu2569 -1.4 -9.8 thiamine biosynthesis protein compare
Atu8054 -1.4 -0.8 hypothetical protein compare
Atu0769 -1.4 -2.3 protoheme IX farnesyltransferase compare
Atu0346 -1.4 -2.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1542 -1.4 -5.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1604 -1.3 -9.7 poly-beta-hydroxybutyrate synthase compare
Atu0608 -1.3 -8.0 transcriptional regulator compare
Atu4000 -1.3 -9.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0606 -1.3 -2.6 hypothetical protein compare
Atu0421 -1.3 -1.8 ABC transporter, membrane spanning protein compare
Atu0405 -1.3 -9.8 long-chain-fatty-acid-CoA-ligase compare
Atu4001 -1.3 -5.2 3-oxoacyl-ACP synthase compare
Atu4161 -1.3 -2.3 hypothetical protein compare
Atu3290 -1.2 -5.4 phosphomethylpyrimidine kinase compare
Atu2808 -1.2 -6.8 cobyric acid synthase compare
Atu3289 -1.2 -2.6 thiamine-phosphate pyrophosphorylase compare
Atu3712 -1.2 -2.1 hypothetical protein compare
Atu2798 -1.2 -3.9 precorrin-6y methyltransferase compare
Atu3730 -1.2 -1.3 hypothetical protein compare
Atu2800 -1.1 -3.6 precorrin-3B C17-methyltransferase compare
Atu1028 -1.1 -2.5 hypothetical protein compare
Atu0705 -1.1 -3.4 3-oxoacyl-(acyl carrier protein) reductase compare
Atu4711 -1.1 -6.3 two component sensor kinase compare
Atu2225 -1.1 -6.7 transcriptional regulator compare
Atu2804 -1.1 -6.5 cobaltochelatase subunit compare
Atu3468 -1.1 -1.1 hypothetical protein compare
Atu2267 -1.0 -4.9 hypothetical protein compare
Atu2745 -1.0 -6.8 acetyl-coenzyme A synthetase compare
Atu1685 -1.0 -1.1 hypothetical protein compare
Atu2249 -1.0 -1.2 hypothetical protein compare
Atu2803 -1.0 -2.5 Cobalamin biosynthesis associated protein compare
Atu3908 -1.0 -6.6 GntR family transcriptional regulator compare
Atu4223 -1.0 -1.9 sarcosine oxidase delta subunit compare
Atu0188 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu4217 -0.9 -1.2 TetR family transcriptional regulator compare
Atu0184 -0.9 -2.7 glucokinase compare
Atu2805 -0.9 -4.6 cobalamin synthesis protein compare
Atu2802 -0.9 -5.3 precorrin-8X methylmutase compare
Atu1572 -0.9 -5.4 hydrolase compare
Atu2795 -0.9 -3.7 cobalamin biosynthetic protein compare
Atu2809 -0.9 -4.9 cobalamin biosynthesis protein compare
Atu2207 -0.9 -1.3 two component sensor kinase compare
Atu2127 -0.9 -4.7 L-carnitine dehydratase compare
Atu1678 -0.9 -4.3 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu3288 -0.9 -4.2 hydroxyethylthiazole kinase compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu1891 -0.9 -3.0 cobalamin biosynthesis protein compare
Atu6114 -0.9 -2.3 hypothetical protein compare
Atu0354 -0.9 -1.7 ferric uptake regulator compare
Atu2770 -0.8 -4.3 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2801 -0.8 -2.6 precorrin-2 C20 methyltransferase compare
Atu4317 -0.8 -2.3 TetR family transcriptional regulator compare
Atu2123 -0.8 -3.1 methylenetetrahydrofolate reductase compare
Atu0031 -0.8 -1.2 PTS system, IIA component compare
Atu1677 -0.8 -2.1 queuine tRNA-ribosyltransferase compare
Atu1774 -0.8 -4.4 ABC transporter, substrate binding protein (peptide) compare
Atu1339 -0.8 -2.4 ribonuclease E compare
Atu0190 -0.8 -3.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4346 -0.8 -2.2 hypothetical protein compare
Atu3740 -0.8 -4.4 fructose bisphosphate aldolase compare
Atu2796 -0.8 -4.1 precorrin-4 C11-methyltransferase compare
Atu0422 -0.8 -0.9 ABC transporter, membrane spanning protein compare
Atu2532 -0.7 -2.3 transcriptional regulator, MarR family compare
Atu0784 -0.7 -1.8 hypothetical protein compare
Atu1634 -0.7 -1.3 hypothetical protein compare
Atu1546 -0.7 -2.9 transcriptional regulator, MerR family compare
Atu2719 -0.7 -4.6 aldose epimerase compare
Atu3732 -0.7 -4.1 hemolysin compare
Atu4505 -0.7 -3.9 LacI family transcriptional regulator compare
Atu0533 -0.7 -1.9 putative inhibitor of septum formation compare
Atu1770 -0.7 -3.8 glutamine synthetase compare
Atu0035 -0.7 -3.4 phosphoenolpyruvate carboxykinase compare
Atu3505 -0.7 -3.4 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2807 -0.7 -3.8 cob(I)alamin adenosyltransferase compare
Atu8052 -0.7 -1.1 hypothetical protein compare
Atu8165 -0.7 -1.1 hypothetical protein compare
Atu1846 -0.7 -1.1 hypothetical protein compare
Atu4685 -0.7 -4.0 LacI family transcriptional regulator compare
Atu6189 -0.7 -1.0 protein secretion chaperone compare
Atu3337 -0.6 -3.9 LacI family transcriptional regulator compare
Atu3663 -0.6 -1.0 hypothetical protein compare
Atu3486 -0.6 -1.6 DeoR family transcriptional regulator compare
Atu1285 -0.6 -2.9 metal dependent hydrolase compare
Atu0846 -0.6 -2.3 transcriptional regulator, MarR family compare
Atu0981 -0.6 -4.2 glutamate-ammonia-ligase adenylyltransferase compare
Atu1904 -0.6 -1.8 transcriptional regulator compare
Atu2286 -0.6 -1.4 hypothetical protein compare
Atu2787 -0.6 -0.8 hypothetical protein compare
Atu4556 -0.6 -3.3 LacI family transcriptional regulator compare
Atu4144 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Stachyose hydrate in Agrobacterium fabrum C58

For carbon source Stachyose hydrate across organisms