Experiment set2IT057 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.6 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_18600 -6.1 -5.4 isopropylmalate isomerase compare
PS417_01565 -5.6 -5.6 imidazole glycerol phosphate synthase compare
PS417_25725 -5.5 -19.4 anthranilate synthase component I compare
PS417_25720 -5.4 -10.7 anthranilate synthase component II compare
PS417_18560 -5.3 -13.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27040 -5.3 -6.3 3-phosphoglycerate dehydrogenase compare
PS417_23805 -5.3 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -5.3 -12.3 ketol-acid reductoisomerase compare
PS417_00185 -5.3 -5.1 tryptophan synthase subunit beta compare
PS417_23545 -5.2 -3.6 gamma-glutamyl kinase compare
PS417_01575 -5.2 -8.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -5.2 -11.2 homoserine acetyltransferase compare
PS417_18585 -5.2 -7.9 3-isopropylmalate dehydrogenase compare
PS417_02510 -4.9 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04415 -4.9 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18530 -4.7 -5.9 O-succinylhomoserine sulfhydrylase compare
PS417_23810 -4.6 -11.8 acetolactate synthase 3 catalytic subunit compare
PS417_01850 -4.5 -10.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18595 -4.5 -5.7 3-isopropylmalate dehydratase compare
PS417_07245 -4.4 -5.1 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_24745 -4.4 -5.8 gamma-glutamyl phosphate reductase compare
PS417_16465 -4.3 -12.3 sirohydrochlorin ferrochelatase compare
PS417_26745 -4.3 -9.5 methionine biosynthesis protein MetW compare
PS417_04420 -4.3 -13.3 histidinol dehydrogenase compare
PS417_02005 -4.2 -12.8 glutamate synthase compare
PS417_07250 -4.1 -9.1 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) conserved
PS417_25710 -3.9 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_27195 -3.9 -2.1 N-acetylglutamate synthase compare
PS417_21035 -3.7 -16.8 multidrug transporter compare
PS417_20985 -3.7 -4.0 porin compare
PS417_25715 -3.6 -6.4 anthranilate phosphoribosyltransferase compare
PS417_23995 -3.6 -1.5 preprotein translocase subunit SecG compare
PS417_12290 -3.6 -7.5 sulfite reductase compare
PS417_27795 -3.6 -2.1 orotate phosphoribosyltransferase compare
PS417_09725 -3.6 -11.5 transporter compare
PS417_05595 -3.6 -9.8 ornithine carbamoyltransferase compare
PS417_23110 -3.5 -9.4 2-isopropylmalate synthase compare
PS417_07260 -3.5 -10.2 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_26890 -3.4 -6.7 dihydroxy-acid dehydratase compare
PS417_26730 -3.2 -1.9 pyrroline-5-carboxylate reductase compare
PS417_02000 -3.2 -15.8 glutamate synthase compare
PS417_08670 -3.2 -6.8 molybdopterin biosynthesis protein B compare
PS417_24155 -3.0 -4.7 ATP-binding protein compare
PS417_13970 -3.0 -11.8 glycerate kinase conserved
PS417_07265 -2.9 -15.0 2-deoxy-D-ribonate transporter 1 (from data) compare
PS417_20160 -2.9 -3.7 cysteine synthase compare
PS417_00180 -2.9 -3.9 tryptophan synthase subunit alpha compare
PS417_01560 -2.9 -3.5 imidazoleglycerol-phosphate dehydratase compare
PS417_02415 -2.8 -6.2 phosphoserine phosphatase compare
PS417_04865 -2.7 -5.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_21395 -2.7 -12.2 radical SAM protein compare
PS417_07255 -2.7 -5.7 Deoxyribonolactonase (from data) conserved
PS417_01605 -2.7 -3.0 phosphoglycerate mutase compare
PS417_26040 -2.6 -7.3 malate synthase compare
PS417_07240 -2.6 -4.6 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_13975 -2.5 -6.9 CdaR family transcriptional regulator compare
PS417_08220 -2.5 -1.7 epimerase compare
PS417_23770 -2.4 -3.8 exodeoxyribonuclease V subunit alpha compare
PS417_10885 -2.3 -11.0 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_14940 -2.2 -3.4 LysR family transcriptional regulator compare
PS417_07640 -2.2 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21490 -2.1 -11.2 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_08125 -2.1 -1.6 prephenate dehydratase compare
PS417_27875 -2.1 -8.5 histidine kinase compare
PS417_08245 -2.0 -1.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08225 -2.0 -5.2 acetolactate synthase compare
PS417_06375 -2.0 -1.7 deoxycytidine triphosphate deaminase compare
PS417_12855 -2.0 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24835 -2.0 -7.2 hypothetical protein compare
PS417_04180 -1.9 -5.3 GntR family transcriptional regulator compare
PS417_10890 -1.9 -6.9 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_20125 -1.9 -3.6 phosphoribosylglycinamide formyltransferase compare
PS417_08675 -1.9 -6.7 molybdenum cofactor biosynthesis protein MoaA compare
PS417_01580 -1.9 -1.0 imidazole glycerol phosphate synthase compare
PS417_08200 -1.8 -4.7 hypothetical protein compare
PS417_01710 -1.8 -7.6 histidine utilization repressor compare
PS417_22570 -1.8 -1.6 H-NS histone compare
PS417_04595 -1.7 -4.2 cell division protein MraZ compare
PS417_08205 -1.7 -3.9 acetyltransferase compare
PS417_08230 -1.7 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_16990 -1.7 -7.0 acyl-CoA dehydrogenase compare
PS417_22445 -1.7 -4.7 ATP-dependent DNA helicase RuvB compare
PS417_21495 -1.7 -3.1 lipoprotein compare
PS417_26995 -1.6 -7.7 phosphoserine phosphatase compare
PS417_20610 -1.6 -1.6 hypothetical protein compare
PS417_22375 -1.6 -1.3 cold-shock protein compare
PS417_20665 -1.5 -7.0 hypothetical protein compare
PS417_27435 -1.5 -6.9 polyphosphate kinase compare
PS417_16570 -1.4 -7.0 isocitrate lyase compare
PS417_08195 -1.4 -8.0 hypothetical protein compare
PS417_00385 -1.4 -1.5 Fur family transcriptional regulator compare
PS417_12310 -1.4 -7.2 methionine synthase compare
PS417_21750 -1.4 -10.8 acetyl-CoA synthetase compare
PS417_27305 -1.4 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22450 -1.4 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_04875 -1.3 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26985 -1.3 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_16715 -1.3 -2.3 DoxX family protein compare
PS417_27870 -1.2 -4.0 ATP-dependent DNA helicase RecG compare
PS417_08730 -1.2 -2.5 cytochrome C compare
PS417_26510 -1.2 -8.2 5,10-methylenetetrahydrofolate reductase compare
PS417_01570 -1.2 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23950 -1.2 -4.0 polynucleotide phosphorylase/polyadenylase compare
PS417_15875 -1.1 -2.4 LuxR family transcriptional regulator compare
PS417_21705 -1.1 -4.8 arginine N-succinyltransferase compare
PS417_27835 -1.1 -5.9 endoribonuclease compare
PS417_10515 -1.1 -4.2 acetyl-CoA acetyltransferase compare
PS417_13305 -1.1 -1.3 hypothetical protein compare
PS417_24765 -1.1 -4.1 membrane protein compare
PS417_11845 -1.1 -3.8 RpiR family transcriptional regulator compare
PS417_15370 -1.1 -3.5 kinase compare
PS417_21700 -1.0 -4.8 arginine N-succinyltransferase compare
PS417_22520 -1.0 -2.3 histidine kinase compare
PS417_19335 -1.0 -3.4 isochorismatase compare
PS417_23170 -1.0 -1.8 FeS assembly protein IscX compare
PS417_21030 -1.0 -5.8 GntR family transcriptional regulator compare
PS417_19600 -1.0 -1.4 exonuclease compare
PS417_26990 -1.0 -1.2 RNA pyrophosphohydrolase compare
PS417_16490 -1.0 -1.9 cell division protein FtsK compare
PS417_25940 -1.0 -4.1 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_10880 -0.9 -4.4 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_22115 -0.9 -3.3 transcriptional regulator compare
PS417_08155 -0.9 -2.4 integration host factor subunit beta compare
PS417_27605 -0.9 -4.3 hypothetical protein compare
PS417_27035 -0.9 -3.8 FAD-linked oxidase compare
PS417_09700 -0.9 -3.1 transaldolase compare
PS417_00085 -0.9 -2.5 16S rRNA methyltransferase compare
PS417_06095 -0.9 -2.1 energy transducer TonB compare
PS417_05065 -0.9 -2.1 hypothetical protein compare
PS417_21125 -0.9 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_25920 -0.9 -4.8 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_01620 -0.9 -1.5 preprotein translocase subunit SecB compare
PS417_02485 -0.8 -3.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_09705 -0.8 -2.4 hypothetical protein compare
PS417_12565 -0.8 -1.9 2-dehydro-3-deoxygluconokinase compare
PS417_10245 -0.8 -1.7 hypothetical protein compare
PS417_28510 -0.8 -3.8 chromosome partitioning protein compare
PS417_15085 -0.8 -3.9 ATPase AAA compare
PS417_23775 -0.8 -0.9 exodeoxyribonuclease V subunit beta compare
PS417_05985 -0.8 -2.1 chemotaxis protein CheY compare
PS417_17490 -0.8 -1.4 ABC transporter ATP-binding protein compare
PS417_28280 -0.8 -2.6 hypothetical protein compare
PS417_07560 -0.8 -1.4 universal stress protein UspA compare
PS417_15035 -0.8 -1.4 alkylhydroperoxidase compare
PS417_22195 -0.8 -3.7 peptidase compare
PS417_05815 -0.8 -3.6 recombinase RecA compare
PS417_11440 -0.8 -1.6 hypothetical protein compare
PS417_17415 -0.8 -2.6 histidine kinase compare
PS417_20340 -0.8 -1.8 hypothetical protein compare
PS417_23315 -0.8 -1.0 transcriptional regulator compare
PS417_17495 -0.8 -3.5 multidrug ABC transporter permease compare
PS417_26120 -0.8 -2.1 hypothetical protein compare
PS417_17855 -0.8 -3.4 major facilitator transporter compare
PS417_25930 -0.8 -4.3 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_17425 -0.7 -3.2 hypothetical protein compare
PS417_09710 -0.7 -2.4 dehydrogenase compare
PS417_23045 -0.7 -2.0 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_14655 -0.7 -1.1 lysine transporter LysE compare
PS417_17420 -0.7 -4.3 ethanol oxidation regulatory protein ercA (from data) compare
PS417_17705 -0.7 -1.1 LacI family transcriptional regulator compare
PS417_08250 -0.7 -1.7 competence protein ComEA compare
PS417_08580 -0.7 -4.3 histidine kinase compare
PS417_25790 -0.7 -3.4 aminoglycoside phosphotransferase compare
PS417_08770 -0.7 -2.4 hypothetical protein compare
PS417_11925 -0.7 -1.5 hypothetical protein compare
PS417_22670 -0.7 -4.1 AraC family transcriptional regulator compare
PS417_15780 -0.7 -2.1 membrane protein compare
PS417_26835 -0.7 -1.5 3-mercaptopyruvate sulfurtransferase compare
PS417_26770 -0.7 -1.6 tRNA (guanine-N7)-methyltransferase compare
PS417_14515 -0.7 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_01290 -0.7 -1.5 ADP-ribose diphosphatase compare
PS417_06200 -0.7 -2.8 protein-PII uridylyltransferase compare
PS417_02765 -0.7 -1.4 phosphate starvation-inducible protein PsiF compare
PS417_12005 -0.7 -2.4 hypothetical protein compare
PS417_10535 -0.7 -3.0 hypothetical protein compare
PS417_01095 -0.7 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_22385 -0.7 -4.5 quinolinate synthase A compare
PS417_08135 -0.7 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_14980 -0.7 -1.0 universal stress protein UspA compare
PS417_20030 -0.7 -1.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_11530 -0.7 -3.5 amidase compare
PS417_10010 -0.7 -2.3 Replication protein P compare
PS417_15305 -0.7 -1.4 type VI secretion protein compare
PS417_19075 -0.7 -4.0 ABC transporter ATP-binding protein compare
PS417_16510 -0.7 -1.7 Clp protease ClpX compare
PS417_10210 -0.7 -3.2 hypothetical protein compare
PS417_08410 -0.7 -1.9 hypothetical protein compare
PS417_02950 -0.6 -2.4 tRNA-dihydrouridine synthase B compare
PS417_13800 -0.6 -1.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_04070 -0.6 -3.5 porin compare
PS417_25390 -0.6 -2.3 MFS transporter compare
PS417_27610 -0.6 -3.9 hypothetical protein compare
PS417_05820 -0.6 -2.0 recombinase RecX compare
PS417_23900 -0.6 -4.1 poly(A) polymerase compare
PS417_16005 -0.6 -2.6 ATPase compare
PS417_15910 -0.6 -2.1 lysine transporter LysE compare
PS417_11180 -0.6 -2.0 TetR family transcriptional regulator compare
PS417_04410 -0.6 -0.9 hypothetical protein compare
PS417_18755 -0.6 -1.6 CrtK compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms