Experiment set2IT057 for Pseudomonas sp. RS175

Compare to:

Xanthosine carbon source 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_01060 +4.9 30.9 HTH-type transcriptional repressor NanR compare
PFR28_04979 +3.7 30.5 Glucans biosynthesis glucosyltransferase H compare
PFR28_04978 +3.5 23.3 Glucans biosynthesis protein G compare
PFR28_00828 +3.3 27.6 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_00427 +3.2 29.9 RNA polymerase sigma factor RpoS compare
PFR28_03079 +3.2 25.6 Sensor histidine kinase RcsC compare
PFR28_04900 +2.6 24.3 hypothetical protein compare
PFR28_04904 +2.6 22.5 HTH-type transcriptional regulator HdfR compare
PFR28_03077 +2.5 21.9 Vitamin B12 transporter BtuB compare
PFR28_00089 +2.5 7.6 Transcription termination/antitermination protein NusA compare
PFR28_01143 +2.5 11.6 tRNA-dihydrouridine(20/20a) synthase compare
PFR28_01270 +2.3 5.4 hypothetical protein compare
PFR28_00139 +2.3 18.4 HTH-type transcriptional regulator LutR compare
PFR28_04621 +2.2 15.1 High-affinity zinc uptake system protein ZnuA compare
PFR28_04618 +2.1 7.9 High-affinity zinc uptake system membrane protein ZnuB compare
PFR28_00836 +1.9 11.8 Flagellar FliJ protein compare
PFR28_04521 +1.9 8.6 HTH-type transcriptional regulator HexR compare
PFR28_01273 +1.8 6.8 hypothetical protein compare
PFR28_01181 +1.7 7.4 hypothetical protein compare
PFR28_00846 +1.7 11.6 Flagellar biosynthetic protein FliQ compare
PFR28_04619 +1.7 9.8 Zinc import ATP-binding protein ZnuC compare
PFR28_00847 +1.6 7.8 Flagellar biosynthetic protein FliR compare
PFR28_03533 +1.6 2.0 DNA-binding protein HU 1 compare
PFR28_00831 +1.6 12.7 Flagellar hook-basal body complex protein FliE compare
PFR28_00845 +1.6 11.3 Flagellar biosynthetic protein FliP compare
PFR28_00832 +1.6 13.2 Flagellar M-ring protein compare
PFR28_00848 +1.5 11.0 Flagellar biosynthetic protein FlhB compare
PFR28_03455 +1.5 9.4 Pyruvate kinase II compare
PFR28_03856 +1.5 6.0 LPS-assembly lipoprotein LptE compare
PFR28_00620 +1.5 10.2 3-oxoadipate CoA-transferase subunit A compare
PFR28_00849 +1.5 12.3 Flagellar biosynthesis protein FlhA compare
PFR28_00835 +1.5 13.3 Flagellum-specific ATP synthase compare
PFR28_00834 +1.4 11.9 hypothetical protein compare
PFR28_02613 +1.4 11.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_04380 +1.3 3.9 Transcriptional regulator SutA compare
PFR28_03281 +1.3 9.3 Arginine N-succinyltransferase subunit beta compare
PFR28_00833 +1.3 8.4 Flagellar motor switch protein FliG compare
PFR28_01150 +1.3 2.3 hypothetical protein compare
PFR28_04040 +1.3 4.0 Protein YhfA compare
PFR28_05058 +1.3 10.5 hypothetical protein compare
PFR28_01741 +1.3 10.4 Phosphoglucomutase compare
PFR28_00852 +1.2 10.1 RNA polymerase sigma factor FliA compare
PFR28_00560 +1.2 9.5 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_02483 +1.2 9.5 Glutathione reductase compare
PFR28_00296 +1.2 2.5 Cytoskeleton protein RodZ compare
PFR28_01146 +1.2 6.0 hypothetical protein compare
PFR28_04489 +1.2 9.1 Phosphate-binding protein PstS compare
PFR28_02145 +1.2 10.9 Glycogen synthase compare
PFR28_00850 +1.2 6.7 Signal recognition particle 54 kDa protein compare
PFR28_03344 +1.2 1.6 Ion-translocating oxidoreductase complex subunit A compare
PFR28_04344 +1.2 5.4 Exopolyphosphatase compare
PFR28_01157 +1.2 3.3 hypothetical protein compare
PFR28_04491 +1.2 4.3 putative acyl-CoA thioester hydrolase compare
PFR28_01748 +1.2 2.4 hypothetical protein compare
PFR28_03427 +1.1 7.0 Sensor histidine kinase RcsC compare
PFR28_00842 +1.1 8.3 Flagellar motor switch protein FliM compare
PFR28_00808 +1.1 8.1 hypothetical protein compare
PFR28_00844 +1.1 2.4 hypothetical protein compare
PFR28_04232 +1.1 6.8 Glutathione synthetase compare
PFR28_04449 +1.1 3.3 hypothetical protein compare
PFR28_00621 +1.1 8.0 3-oxoadipate CoA-transferase subunit B compare
PFR28_01269 +1.1 3.7 Putrescine importer PuuP compare
PFR28_03106 +1.1 7.8 hypothetical protein compare
PFR28_03919 +1.1 2.0 hypothetical protein compare
PFR28_04103 +1.1 7.8 Biotin synthase compare
PFR28_01358 +1.1 1.5 hypothetical protein compare
PFR28_03837 +1.1 7.1 Leucine-responsive regulatory protein compare
PFR28_03251 +1.0 9.5 Flagellar hook protein FlgE compare
PFR28_00156 +1.0 4.6 Rod shape-determining protein MreD compare
PFR28_01326 +1.0 1.9 HTH-type transcriptional regulator GltC compare
PFR28_04089 +1.0 1.6 PqqA binding protein compare
PFR28_03846 +1.0 6.9 hypothetical protein compare
PFR28_00452 +1.0 2.3 hypothetical protein compare
PFR28_03657 +1.0 6.0 Beta-barrel assembly-enhancing protease compare
PFR28_03227 +1.0 6.9 Signal transduction histidine-protein kinase BarA compare
PFR28_02408 +1.0 7.1 hypothetical protein compare
PFR28_00689 +1.0 8.6 L-aspartate oxidase compare
PFR28_01151 +0.9 4.6 hypothetical protein compare
PFR28_04921 +0.9 1.5 hypothetical protein compare
PFR28_03254 +0.9 6.0 Flagellar basal body rod protein FlgB compare
PFR28_03812 +0.9 8.1 HTH-type transcriptional repressor NicS compare
PFR28_00498 +0.9 3.0 Cold shock protein CapB compare
PFR28_00805 +0.9 6.8 Flagellar basal-body rod protein FlgG compare
PFR28_03723 +0.9 5.8 Aspartate 1-decarboxylase compare
PFR28_01570 +0.9 2.9 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical' transl_table=11 compare
PFR28_02155 +0.9 6.7 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase compare
PFR28_04497 +0.9 5.8 HTH-type transcriptional regulator YjiE compare
PFR28_03252 +0.9 5.8 Basal-body rod modification protein FlgD compare
PFR28_04486 +0.9 7.2 Phosphate import ATP-binding protein PstB compare
PFR28_00960 +0.9 8.4 hypothetical protein compare
PFR28_03105 +0.9 7.7 hypothetical protein compare
PFR28_04325 +0.9 6.0 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_01037 +0.9 7.3 Phosphoenolpyruvate synthase regulatory protein compare
PFR28_01855 +0.9 1.3 Hypoxic response protein 1 compare
PFR28_04865 +0.9 5.6 Glutamate--cysteine ligase compare
PFR28_00862 +0.9 3.8 hypothetical protein compare
PFR28_00598 +0.9 7.4 hypothetical protein compare
PFR28_03696 +0.9 6.3 hypothetical protein compare
PFR28_05130 +0.9 5.9 Ribonuclease R compare
PFR28_00823 +0.9 6.4 Flagellin compare
PFR28_03253 +0.9 7.0 Flagellar basal-body rod protein FlgC compare
PFR28_04488 +0.9 7.4 hypothetical protein compare
PFR28_02719 +0.9 3.1 Integration host factor subunit alpha compare
PFR28_01583 +0.9 1.5 hypothetical protein compare
PFR28_05068 +0.9 3.1 hypothetical protein compare
PFR28_01184 +0.9 4.6 hypothetical protein compare
PFR28_03823 +0.9 4.9 hypothetical protein compare
PFR28_04361 +0.8 6.6 Regulator of sigma D compare
PFR28_00546 +0.8 6.7 HTH-type transcriptional activator RhaS compare
PFR28_02771 +0.8 2.1 Putative tyrosine-protein kinase YveL compare
PFR28_03259 +0.8 2.8 hypothetical protein compare
PFR28_03629 +0.8 4.6 hypothetical protein compare
PFR28_01600 +0.8 1.5 HTH-type transcriptional regulator KdgR compare
PFR28_04208 +0.8 4.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_04567 +0.8 6.9 hypothetical protein compare
PFR28_00841 +0.8 4.2 hypothetical protein compare
PFR28_00274 +0.8 2.4 hypothetical protein compare
PFR28_04401 +0.8 2.3 hypothetical protein compare
PFR28_01186 +0.8 4.0 hypothetical protein compare
PFR28_00394 +0.8 6.2 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
PFR28_00804 +0.8 4.8 Flagellar basal-body rod protein FlgF compare
PFR28_02800 +0.8 1.0 hypothetical protein compare
PFR28_01251 +0.8 2.3 ECF RNA polymerase sigma factor EcfG compare
PFR28_01014 +0.8 1.4 Pyrimidine/purine nucleoside phosphorylase compare
PFR28_01148 +0.8 4.2 hypothetical protein compare
PFR28_01147 +0.8 3.5 hypothetical protein compare
PFR28_05005 +0.8 5.2 NADP-dependent malic enzyme compare
PFR28_03237 +0.8 6.4 Inner membrane protein YohC compare
PFR28_04564 +0.8 6.4 Aspartate-semialdehyde dehydrogenase compare
PFR28_04569 +0.8 5.1 HTH-type transcriptional regulator CdhR compare
PFR28_01173 +0.8 1.6 hypothetical protein compare
PFR28_00613 +0.8 1.2 hypothetical protein compare
PFR28_04236 +0.7 4.1 Bifunctional protein PyrR compare
PFR28_01691 +0.7 2.1 hypothetical protein compare
PFR28_01144 +0.7 4.7 hypothetical protein compare
PFR28_03651 +0.7 5.7 Lipid A deacylase PagL compare
PFR28_04461 +0.7 1.0 hypothetical protein compare
PFR28_02772 +0.7 3.3 hypothetical protein compare
PFR28_00809 +0.7 6.3 hypothetical protein compare
PFR28_03108 +0.7 4.6 HTH-type transcriptional regulator RutR compare
PFR28_00042 +0.7 2.9 1-aminocyclopropane-1-carboxylate deaminase compare
PFR28_05124 +0.7 2.9 Modulator of FtsH protease HflC compare
PFR28_05227 +0.7 3.3 putative protein YciH compare
PFR28_04936 +0.7 2.5 Carboxy-terminal processing protease CtpB compare
PFR28_00944 +0.7 3.8 putative NTE family protein compare
PFR28_00807 +0.7 4.1 Flagellar P-ring protein compare
PFR28_00806 +0.7 4.6 Flagellar L-ring protein compare
PFR28_02562 +0.7 2.7 hypothetical protein compare
PFR28_04298 +0.7 4.7 Gamma-glutamylputrescine synthetase PuuA compare
PFR28_04204 +0.7 5.3 ATP-dependent RNA helicase RhlE compare
PFR28_04566 +0.7 5.3 4-chloro-allylglycine synthase compare
PFR28_01709 +0.7 4.4 Polyol:NADP oxidoreductase compare
PFR28_04664 +0.6 3.9 Trk system potassium uptake protein TrkA compare
PFR28_00712 +0.6 5.1 Ribonuclease D compare
PFR28_04359 +0.6 3.5 hypothetical protein compare
PFR28_03273 +0.6 2.8 Aspartate kinase compare
PFR28_05014 +0.6 5.1 Cell division protein DamX compare
PFR28_03544 +0.6 5.7 ATP-dependent RNA helicase RhlB compare
PFR28_01208 +0.6 4.9 Arylamine N-acetyltransferase compare
PFR28_04853 +0.6 1.7 L-cystine import ATP-binding protein TcyC compare
PFR28_04638 +0.6 4.4 Proton/glutamate-aspartate symporter compare
PFR28_03405 +0.6 3.2 Cell division coordinator CpoB compare
PFR28_00840 +0.6 4.4 hypothetical protein compare
PFR28_01162 +0.6 1.7 hypothetical protein compare
PFR28_01450 +0.6 0.8 hypothetical protein compare
PFR28_04403 +0.6 1.1 hypothetical protein compare
PFR28_02324 +0.6 1.4 hypothetical protein compare
PFR28_02931 +0.6 4.2 hypothetical protein compare
PFR28_02963 +0.6 2.5 hypothetical protein compare
PFR28_04347 +0.6 4.7 hypothetical protein compare
PFR28_03681 +0.6 2.6 [Ribosomal protein S18]-alanine N-acetyltransferase compare
PFR28_02818 +0.6 5.0 hypothetical protein compare
PFR28_01145 +0.6 2.7 hypothetical protein compare
PFR28_03782 +0.6 2.6 hypothetical protein compare
PFR28_03285 +0.6 3.3 Histidine transport ATP-binding protein HisP compare
PFR28_00514 +0.6 3.4 hypothetical protein compare
PFR28_04120 +0.6 1.1 hypothetical protein compare
PFR28_04886 +0.6 3.0 ADP compounds hydrolase NudE compare
PFR28_02232 +0.6 0.9 hypothetical protein compare
PFR28_00617 +0.6 3.4 hypothetical protein compare
PFR28_04458 +0.6 2.4 Protein hcp1 compare
PFR28_02251 +0.6 2.6 hypothetical protein compare
PFR28_02770 +0.5 3.1 hypothetical protein compare
PFR28_02430 +0.5 1.6 Hydrogen cyanide synthase subunit HcnA compare
PFR28_04939 +0.5 2.2 putative protein YibN compare
PFR28_03059 +0.5 1.7 hypothetical protein compare
PFR28_00798 +0.5 3.9 Trk system potassium uptake protein TrkI compare
PFR28_03154 +0.5 4.1 Dual-specificity RNA pseudouridine synthase RluA compare
PFR28_05197 +0.5 1.3 hypothetical protein compare
PFR28_01415 +0.5 2.0 hypothetical protein compare
PFR28_01969 +0.5 1.7 hypothetical protein compare
PFR28_01057 +0.5 3.7 D-alanyl-D-alanine carboxypeptidase DacC compare
PFR28_01155 +0.5 1.3 hypothetical protein compare
PFR28_02940 +0.5 3.3 Phosphoglycolate phosphatase compare
PFR28_02179 +0.5 2.6 Ornithine carbamoyltransferase, catabolic compare
PFR28_03286 +0.5 3.9 Octopine transport system permease protein OccM compare
PFR28_02891 +0.5 1.1 HTH-type transcriptional regulator CdhR compare
PFR28_01386 +0.5 0.9 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03114 +0.5 2.2 Pyruvate kinase compare
PFR28_01266 +0.5 3.6 Oxaloacetate decarboxylase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Xanthosine in Pseudomonas sp. RS175

For carbon source Xanthosine across organisms