Experiment set2IT057 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Dimethyl Sulfoxide 12 vol%

200 most detrimental genes:

  gene name fitness t score description  
Echvi_4631 +1.9 15.0 (p)ppGpp synthetase, RelA/SpoT family compare
Echvi_0164 +1.5 12.5 Mannose-1-phosphate guanylyltransferase compare
Echvi_0641 +1.4 1.9 Transposase and inactivated derivatives compare
Echvi_3872 +1.3 3.2 SnoaL-like polyketide cyclase. compare
Echvi_3000 +1.3 11.1 Di- and tricarboxylate transporters compare
Echvi_0642 +1.3 7.4 pseudouridine synthase, RluA family compare
Echvi_1662 +1.3 2.8 hypothetical protein compare
Echvi_0986 +1.3 6.0 Rrf2 family protein compare
Echvi_2953 +1.3 3.3 Uncharacterized conserved protein compare
Echvi_3142 +1.3 2.9 hypothetical protein compare
Echvi_4640 +1.2 1.4 hypothetical protein compare
Echvi_3311 +1.2 2.3 Transcriptional regulator/sugar kinase compare
Echvi_2996 +1.1 5.1 polyphosphate kinase 1 compare
Echvi_0724 +1.1 2.8 hypothetical protein compare
Echvi_1020 +1.1 2.1 hypothetical protein compare
Echvi_2298 +1.0 2.5 hypothetical protein compare
Echvi_2779 +1.0 3.1 hypothetical protein compare
Echvi_3195 +1.0 3.1 hypothetical protein compare
Echvi_1638 +1.0 2.5 hypothetical protein compare
Echvi_4595 +0.9 0.9 hypothetical protein compare
Echvi_3934 +0.9 1.4 hypothetical protein compare
Echvi_3075 +0.9 1.5 hypothetical protein compare
Echvi_3995 +0.9 2.0 hypothetical protein compare
Echvi_2401 +0.9 1.3 hypothetical protein compare
Echvi_1519 +0.8 4.6 Na+/H+-dicarboxylate symporters compare
Echvi_0985 +0.8 4.7 Predicted membrane protein compare
Echvi_1080 +0.8 2.5 hypothetical protein compare
Echvi_0180 +0.8 1.3 transcription elongation factor GreA compare
Echvi_1900 +0.8 2.8 nitrite reductase [NAD(P)H], small subunit compare
Echvi_0157 +0.8 2.1 hexose kinase, 1-phosphofructokinase family compare
Echvi_0091 +0.8 2.2 glycine cleavage system T protein compare
Echvi_3057 +0.8 1.6 citrate synthase I (hexameric type) compare
Echvi_2995 +0.8 2.7 hypothetical protein compare
Echvi_1201 +0.8 3.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_1034 +0.8 2.9 hypothetical protein compare
Echvi_4375 +0.7 1.1 hypothetical protein compare
Echvi_3890 +0.7 2.5 hypothetical protein compare
Echvi_2284 +0.7 2.0 hypothetical protein compare
Echvi_4396 +0.7 4.9 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis compare
Echvi_0865 +0.7 5.5 RNA polymerase sigma factor, sigma-70 family compare
Echvi_1719 +0.7 1.3 hypothetical protein compare
Echvi_1531 +0.7 3.1 putative TIM-barrel protein, nifR3 family compare
Echvi_1939 +0.7 1.9 Bacteroides conjugative transposon TraN protein compare
Echvi_1752 +0.7 2.2 hypothetical protein compare
Echvi_3960 +0.7 1.4 Histone H1-like protein Hc1. compare
Echvi_0145 +0.7 4.0 2-amino-3-ketobutyrate coenzyme A ligase compare
Echvi_3440 +0.7 1.5 bacillithiol biosynthesis deacetylase BshB1 compare
Echvi_4081 +0.6 1.3 Malic enzyme compare
Echvi_4383 +0.6 1.0 hypothetical protein compare
Echvi_1948 +0.6 1.9 hypothetical protein compare
Echvi_3910 +0.6 4.6 Transcriptional regulator/sugar kinase compare
Echvi_1516 +0.6 1.8 hypothetical protein compare
Echvi_0438 +0.6 1.3 hypothetical protein compare
Echvi_1023 +0.6 1.4 hypothetical protein compare
Echvi_1765 +0.6 1.1 Cell wall-associated hydrolases (invasion-associated proteins) compare
Echvi_3292 +0.6 1.0 hypothetical protein compare
Echvi_3914 +0.6 5.4 Transcriptional regulators compare
Echvi_3262 +0.6 1.6 hypothetical protein compare
Echvi_2864 +0.6 1.4 Predicted acetyltransferase compare
Echvi_0083 +0.6 3.2 Predicted xylanase/chitin deacetylase compare
Echvi_0127 +0.6 0.9 hypothetical protein compare
Echvi_2958 +0.6 4.0 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Echvi_3745 +0.6 2.1 hypothetical protein compare
Echvi_4024 +0.6 2.1 hypothetical protein compare
Echvi_2930 +0.6 1.4 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Echvi_1854 +0.6 1.1 tRNA compare
Echvi_2463 +0.6 1.3 Translation initiation factor 1 (eIF-1/SUI1) and related proteins compare
Echvi_0750 +0.6 1.6 hypothetical protein compare
Echvi_3278 +0.6 1.8 hypothetical protein compare
Echvi_4162 +0.6 1.9 Flavodoxins compare
Echvi_0652 +0.5 2.7 Outer membrane protein compare
Echvi_1999 +0.5 2.2 hypothetical protein compare
Echvi_2365 +0.5 2.1 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_4055 +0.5 1.6 Uncharacterized protein involved in copper resistance compare
Echvi_3824 +0.5 1.0 hypothetical protein compare
Echvi_1204 +0.5 2.7 Transcriptional regulator compare
Echvi_4397 +0.5 3.7 Nucleoside-diphosphate-sugar epimerases compare
Echvi_4237 +0.5 1.9 Predicted glycosyltransferases compare
Echvi_3088 +0.5 2.9 Lactoylglutathione lyase and related lyases compare
Echvi_0450 +0.5 2.7 hypothetical protein compare
Echvi_4115 +0.5 2.4 Nitrogen regulatory protein PII compare
Echvi_0004 +0.5 1.8 hypothetical protein compare
Echvi_2046 +0.5 2.4 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Echvi_1760 +0.5 2.4 preprotein translocase, YajC subunit compare
Echvi_2862 +0.5 1.6 glucose-6-phosphate 1-dehydrogenase compare
Echvi_1457 +0.5 3.2 Isopenicillin N synthase and related dioxygenases compare
Echvi_1929 +0.5 1.4 hypothetical protein compare
Echvi_0650 +0.5 1.3 thioredoxin compare
Echvi_2072 +0.5 2.5 hypothetical protein compare
Echvi_1841 +0.5 1.9 predicted cytochrome c component of periplasmic glycoside 3-dehydrogenase (EC 1.1.99.13) (from data) compare
Echvi_4327 +0.5 1.0 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_4607 +0.5 2.5 Uncharacterized protein conserved in bacteria compare
Echvi_1992 +0.5 2.2 Small-conductance mechanosensitive channel compare
Echvi_1800 +0.5 1.7 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family compare
Echvi_0935 +0.5 2.0 bacillithiol system protein YtxJ compare
Echvi_2233 +0.5 2.1 pyridoxal phosphate enzyme, YggS family compare
Echvi_4594 +0.5 3.3 Xaa-Pro aminopeptidase compare
Echvi_0582 +0.5 1.7 hypothetical protein compare
Echvi_4459 +0.5 2.0 Protein of unknown function (DUF3703). compare
Echvi_3639 +0.5 1.6 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Echvi_0346 +0.5 1.8 Predicted acyltransferase compare
Echvi_0080 +0.5 3.3 L-asparaginases, type I compare
Echvi_4545 +0.5 2.3 hypothetical protein compare
Echvi_1577 +0.5 2.2 hypothetical protein compare
Echvi_1442 +0.5 1.7 hypothetical protein compare
Echvi_3822 +0.5 2.2 NAD-dependent aldehyde dehydrogenases compare
Echvi_2624 +0.5 1.9 hypothetical protein compare
Echvi_2715 +0.5 1.8 hypothetical protein compare
Echvi_1342 +0.5 1.0 Predicted endonuclease containing a URI domain compare
Echvi_2211 +0.4 1.9 hypothetical protein compare
Echvi_1615 +0.4 1.8 Esterase/lipase compare
Echvi_2574 +0.4 1.8 hypothetical protein compare
Echvi_3711 +0.4 1.2 hypothetical protein compare
Echvi_3746 +0.4 2.0 hypothetical protein compare
Echvi_0101 +0.4 2.1 hypothetical protein compare
Echvi_2860 +0.4 1.0 sugar-phosphate isomerases, RpiB/LacA/LacB family compare
Echvi_1180 +0.4 1.7 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Echvi_1196 +0.4 0.7 triosephosphate isomerase compare
Echvi_3950 +0.4 2.8 Glycine/D-amino acid oxidases (deaminating) compare
Echvi_3880 +0.4 1.3 hypothetical protein compare
Echvi_2264 +0.4 2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_4365 +0.4 0.6 hypothetical protein compare
Echvi_1300 +0.4 2.9 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 compare
Echvi_2954 +0.4 2.3 Nucleoside permease compare
Echvi_3505 +0.4 0.7 hypothetical protein compare
Echvi_0945 +0.4 1.2 hypothetical protein compare
Echvi_0343 +0.4 1.8 Enoyl-CoA hydratase/carnithine racemase compare
Echvi_2455 +0.4 1.7 hypothetical protein compare
Echvi_2198 +0.4 0.5 hypothetical protein compare
Echvi_3268 +0.4 2.6 hypothetical protein compare
Echvi_1272 +0.4 2.0 Protein of unknown function (DUF2442). compare
Echvi_2787 +0.4 1.7 HopJ type III effector protein. compare
Echvi_2709 +0.4 1.3 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_0436 +0.4 0.7 Bacterial mobilisation protein (MobC). compare
Echvi_0585 +0.4 2.4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_1408 +0.4 2.0 DNA adenine methylase (dam) compare
Echvi_4218 +0.4 1.1 RND family efflux transporter, MFP subunit compare
Echvi_3378 +0.4 1.1 Rhodanese-related sulfurtransferase compare
Echvi_0645 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
Echvi_4251 +0.4 2.3 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Echvi_1761 +0.4 2.6 hypothetical protein compare
Echvi_2586 +0.4 0.5 hypothetical protein compare
Echvi_1950 +0.4 0.7 hypothetical protein compare
Echvi_2423 +0.4 2.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Echvi_0845 +0.4 1.9 hypothetical protein compare
Echvi_1492 +0.4 1.0 hypothetical protein compare
Echvi_0663 +0.4 1.1 Predicted methyltransferases compare
Echvi_1224 +0.4 3.0 gliding motility-associated lipoprotein GldD compare
Echvi_0339 +0.4 1.9 Tetratricopeptide repeat. compare
Echvi_2266 +0.4 3.2 Alanine dehydrogenase compare
Echvi_1136 +0.4 0.9 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases compare
Echvi_4357 +0.4 1.3 Protein of unknown function (DUF3714). compare
Echvi_3074 +0.4 0.6 hypothetical protein compare
Echvi_1109 +0.4 1.7 Predicted ATPase/kinase involved in NAD metabolism compare
Echvi_4177 +0.4 1.8 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Echvi_1491 +0.4 0.8 export-related chaperone CsaA compare
Echvi_4025 +0.4 0.8 hypothetical protein compare
Echvi_1258 +0.4 2.0 Peptide methionine sulfoxide reductase compare
Echvi_3300 +0.4 1.4 hypothetical protein compare
Echvi_1675 +0.4 2.1 SusD family. compare
Echvi_1620 +0.4 1.8 L-rhamnose 1-epimerase compare
Echvi_0275 +0.4 0.7 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Echvi_2947 +0.4 1.3 hypothetical protein compare
Echvi_3676 +0.4 1.6 hypothetical protein compare
Echvi_4068 +0.4 1.0 isocitrate dehydrogenase compare
Echvi_4126 +0.4 1.9 AraC-type DNA-binding domain-containing proteins compare
Echvi_4021 +0.4 1.5 Cytochrome c peroxidase compare
Echvi_3951 +0.4 2.5 Proline racemase compare
Echvi_2635 +0.4 2.4 pyrroline-5-carboxylate reductase compare
Echvi_0359 +0.4 1.0 hypothetical protein compare
Echvi_2424 +0.4 1.4 hypothetical protein compare
Echvi_3896 +0.4 0.9 PAP2 superfamily. compare
Echvi_0527 +0.4 2.0 Predicted endonuclease containing a URI domain compare
Echvi_2524 +0.4 1.0 CRISPR-associated endoribonuclease Cas6 compare
Echvi_4456 +0.4 2.2 Transposase DDE domain. compare
Echvi_4325 +0.4 1.4 hypothetical protein compare
Echvi_3757 +0.4 1.3 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Echvi_3911 +0.4 3.1 alpha-1,2-mannosidase, putative compare
Echvi_2226 +0.4 1.1 hypothetical protein compare
Echvi_2956 +0.4 1.3 hypothetical protein compare
Echvi_1264 +0.4 0.7 hypothetical protein compare
Echvi_0971 +0.4 2.0 Predicted membrane protein compare
Echvi_0553 +0.4 1.7 hypothetical protein compare
Echvi_3347 +0.4 0.4 hypothetical protein compare
Echvi_2474 +0.4 1.9 Diaminopimelate decarboxylase compare
Echvi_1848 +0.4 2.3 periplasmic glucoside 3-dehydrogenase (lacC subunit) (EC 1.1.99.13) (from data) compare
Echvi_1988 +0.4 1.4 Uncharacterized conserved protein compare
Echvi_1460 +0.4 1.1 Thymidine kinase compare
Echvi_3223 +0.3 0.9 Mn-dependent transcriptional regulator compare
Echvi_3953 +0.3 1.6 Dihydrodipicolinate synthase/N-acetylneuraminate lyase compare
Echvi_0622 +0.3 2.3 gliding motility-associated protein GldL compare
Echvi_4600 +0.3 0.7 Uncharacterized conserved protein compare
Echvi_1832 +0.3 1.3 Peroxiredoxin compare
Echvi_0358 +0.3 1.7 RNA polymerase sigma factor, sigma-70 family compare
Echvi_4581 +0.3 1.5 hypothetical protein compare
Echvi_2838 +0.3 1.0 Cytosine/adenosine deaminases compare
Echvi_3456 +0.3 0.6 Uncharacterized protein conserved in bacteria compare
Echvi_1188 +0.3 1.2 Glycine/serine hydroxymethyltransferase compare
Echvi_1218 +0.3 2.2 aspartate kinase compare
Echvi_3229 +0.3 1.1 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Dimethyl Sulfoxide in Echinicola vietnamensis KMM 6221, DSM 17526

For stress Dimethyl Sulfoxide across organisms