Experiment set2IT057 for Agrobacterium fabrum C58

Compare to:

D-Saccharic acid potassium salt carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -5.1 -3.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu3967 -4.6 -4.5 sugar ABC transporter substrate-binding protein compare
Atu4674 -4.3 -5.8 GntR family transcriptional regulator compare
Atu1307 -4.2 -2.9 dihydroorotase compare
Atu1850 -4.2 -2.9 phosphoribosylformylglycinamidine synthetase II compare
Atu1580 -4.1 -5.6 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu3973 -4.0 -3.9 hypothetical protein compare
Atu0432 -4.0 -2.8 O-succinylhomoserine sulfhydrylase compare
Atu3754 -3.9 -2.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3970 -3.9 -8.4 sugar ABC transporter ATPase compare
Atu2791 -3.9 -2.7 3-isopropylmalate dehydrogenase compare
Atu2709 -3.9 -5.9 3-isopropylmalate dehydratase, large subunit compare
Atu3968 -3.8 -6.8 sugar ABC transporter permease compare
Atu0035 -3.7 -4.4 phosphoenolpyruvate carboxykinase compare
Atu0486 -3.7 -2.6 dihydroorotate dehydrogenase compare
Atu3971 -3.6 -8.1 dihydroxy-acid dehydratase compare
Atu0099 -3.6 -4.3 prephenate dehydratase compare
Atu1578 -3.6 -3.5 ABC transporter, membrane spanning protein (amino acid) compare
Atu1140 -3.5 -3.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1620 -3.5 -4.2 triosephosphate isomerase compare
Atu2289 -3.5 -7.6 anthranilate synthase component I and II compare
Atu1687 -3.5 -5.3 anthranilate phosphoribosyltransferase compare
Atu0030 -3.5 -1.8 phosphocarrier protein HPr compare
Atu0421 -3.5 -1.8 ABC transporter, membrane spanning protein compare
Atu1205 -3.4 -5.7 threonine dehydratase compare
Atu2650 -3.3 -5.9 glycerol-3-phosphate dehydrogenase compare
Atu2036 -3.3 -5.5 acetolactate synthase III, large subunit compare
Atu2264 -3.3 -5.0 2-isopropylmalate synthase compare
Atu4232 -3.2 -4.4 GntR family transcriptional regulator compare
Atu3706 -3.2 -2.2 D-3-phosphoglycerate dehydrogenase compare
Atu4446 -3.2 -8.9 hypothetical protein compare
Atu0298 -3.1 -2.2 orotidine 5 compare
Atu1075 -3.1 -3.1 amidophosphoribosyltransferase compare
Atu1308 -3.1 -3.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0679 -3.1 -2.2 ATP phosphoribosyltransferase compare
Atu0400 -3.1 -2.2 orotate phosphoribosyltransferase compare
Atu0031 -3.1 -1.6 PTS system, IIA component compare
Atu3739 -3.1 -1.9 phosphoglycerate kinase compare
Atu1844 -3.0 -2.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3740 -3.0 -3.6 fructose bisphosphate aldolase compare
Atu4128 -3.0 -9.3 GMC type oxidoreductase compare
Atu0401 -3.0 -4.5 fructokinase compare
Atu3969 -2.9 -4.0 sugar ABC transporter permease compare
Atu0536 -2.9 -4.5 hypothetical protein compare
Atu3972 -2.9 -4.0 hypothetical protein compare
Atu3966 -2.9 -6.8 oxidoreductase compare
Atu3908 -2.9 -5.9 GntR family transcriptional regulator compare
Atu1588 -2.9 -4.8 homoserine dehydrogenase compare
Atu8057 -2.9 -2.0 hypothetical protein compare
Atu1848 -2.9 -4.4 transcriptional regulator, GntR family compare
Atu2718 -2.8 -3.4 homoserine O-succinyltransferase compare
Atu1845 -2.8 -2.5 phosphoribosylformylglycinamidine synthase I compare
Atu1141 -2.8 -3.8 Phosphoribosylglycinamide synthetase compare
Atu4317 -2.7 -2.7 TetR family transcriptional regulator compare
Atu1579 -2.7 -5.6 ABC transporter, membrane spanning protein (amino acid) compare
Atu2239 -2.7 -2.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0767 -2.7 -3.7 cytochrome c oxidase subunit II compare
Atu4505 -2.7 -5.4 LacI family transcriptional regulator compare
Atu1359 -2.7 -1.4 dnaK deletion suppressor protein compare
Atu1503 -2.6 -1.3 hypothetical protein compare
Atu4514 -2.6 -3.1 RpiR family transcriptional regulator compare
Atu3183 -2.5 -1.3 hypothetical protein compare
Atu4824 -2.5 -6.3 IclR family transcriptional regulator compare
Atu3965 -2.5 -5.7 oxidoreductase compare
Atu8099 -2.5 -1.7 hypothetical protein compare
Atu1589 -2.5 -3.4 aminotransferase, class I compare
Atu2209 -2.5 -2.4 pyrroline-5-carboxylate reductase compare
Atu1286 -2.4 -3.7 hypothetical protein compare
Atu2155 -2.4 -9.3 methionine synthase compare
Atu0322 -2.4 -3.2 enoyl CoA hydratase compare
Atu4711 -2.3 -3.6 two component sensor kinase compare
Atu0537 -2.3 -1.6 histidinol dehydrogenase compare
Atu0771 -2.3 -5.0 cytochrome c oxidase subunit III compare
Atu3162 -2.3 -6.2 LacI family transcriptional regulator compare
Atu3707 -2.3 -1.6 phosphoserine aminotransferase compare
Atu3598 -2.3 -2.2 thiol:disulfide interchange protein compare
Atu1688 -2.3 -2.2 indole-3-glycerol-phosphate synthase compare
Atu0062 -2.2 -5.6 transcriptional regulator, ROK family compare
Atu4364 -2.2 -6.0 LacI family transcriptional regulator compare
Atu0399 -2.2 -2.7 dihydroorotase compare
Atu1074 -2.2 -8.1 NAD/NADP dependent oxidoreductase compare
Atu3799 -2.2 -7.3 GntR family transcriptional regulator compare
Atu3144 -2.2 -3.8 GntR family transcriptional regulator compare
Atu1464 -2.2 -4.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu2040 -2.2 -2.1 phosphoserine phosphatase compare
Atu0876 -2.2 -1.5 superoxide dismutase compare
Atu0660 -2.2 -4.2 hydrolase compare
Atu0434 -2.1 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2015 -2.1 -6.3 aminotransferase compare
Atu0924 -2.1 -4.0 hypothetical protein compare
Atu4576 -2.1 -5.5 ROK family transcriptional regulator compare
Atu3912 -2.1 -2.8 hypothetical protein compare
Atu1592 -2.0 -6.1 hypothetical protein compare
Atu0803 -2.0 -9.8 pyruvate,orthophosphate dikinase compare
Atu1462 -2.0 -6.7 glycine cleavage system protein P2 compare
Atu4825 -2.0 -3.8 dehydrogenase compare
Atu1577 -2.0 -3.3 ABC transporter, substrate binding protein (amino acid) compare
Atu3910 -2.0 -3.5 LamB/YcsF family protein compare
Atu1242 -2.0 -5.2 cytochrome oxidase assembly factor compare
Atu0017 -1.9 -1.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3755 -1.9 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3885 -1.9 -3.8 inositol monophosphatase compare
Atu3337 -1.9 -5.3 LacI family transcriptional regulator compare
Atu2484 -1.9 -1.2 hypothetical protein compare
Atu2238 -1.9 -4.8 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3577 -1.9 -5.8 transcriptional regulator compare
Atu2790 -1.9 -1.9 3-isopropylmalate dehydratase, small subunit compare
Atu0768 -1.9 -6.7 cytochrome-c oxidase chain I compare
Atu3963 -1.9 -5.0 GntR family transcriptional regulator compare
Atu2205 -1.8 -4.1 transcriptional regulator, MarR family compare
Atu4702 -1.8 -3.9 GntR family transcriptional regulator compare
Atu1463 -1.8 -3.9 glycine cleavage system component H compare
Atu4173 -1.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu2606 -1.8 -3.5 transcriptional regulator, GntR family compare
Atu0606 -1.8 -2.1 hypothetical protein compare
Atu1634 -1.8 -1.1 hypothetical protein compare
Atu3964 -1.8 -3.9 dehydrogenase compare
Atu3485 -1.8 -7.4 short chain dehydrogenase compare
Atu2532 -1.8 -2.4 transcriptional regulator, MarR family compare
Atu0770 -1.7 -4.7 cytochrome C oxidase assembly protein compare
Atu1522 -1.7 -4.7 transcriptional regulator, LacI family compare
Atu3240 -1.7 -6.2 ROK family transcriptional regulator compare
Atu1456 -1.7 -4.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu6114 -1.7 -1.2 hypothetical protein compare
Atu2511 -1.7 -5.9 D-alanine aminotransferase compare
Atu1705 -1.7 -4.3 SEC-independent protein translocase protein compare
Atu4161 -1.7 -1.3 hypothetical protein compare
Atu3898 -1.7 -3.8 DeoR family transcriptional regulator compare
Atu1149 -1.6 -1.1 adenylate cyclase compare
Atu6106 -1.6 -1.6 conserved hypothetical protein compare
Atu4541 -1.6 -3.6 carboxymuconolactone decarboxylase compare
Atu8025 -1.6 -1.1 hypothetical protein compare
Atu2798 -1.6 -1.9 precorrin-6y methyltransferase compare
Atu8082 -1.5 -1.5 hypothetical protein compare
Atu2207 -1.5 -2.1 two component sensor kinase compare
Atu4187 -1.5 -1.3 tRNA-Met compare
Atu4176 -1.5 -4.0 hypothetical protein compare
Atu4451 -1.5 -4.4 mannitol 2-dehydrogenase compare
Atu8162 -1.5 -1.0 hypothetical protein compare
Atu0331 -1.5 -1.5 sigma-54 modulation protein compare
Atu1876 -1.5 -5.4 hypothetical protein compare
Atu2746 -1.5 -2.0 hypothetical protein compare
Atu3226 -1.5 -4.0 GntR family transcriptional regulator compare
Atu2115 -1.5 -3.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0413 -1.5 -1.4 stress induced protein compare
Atu4556 -1.5 -4.2 LacI family transcriptional regulator compare
Atu1364 -1.5 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3505 -1.4 -4.5 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1904 -1.4 -1.4 transcriptional regulator compare
Atu3878 -1.4 -5.8 transcriptional regulator compare
Atu4226 -1.4 -4.7 transcriptional regulator compare
Atu3532 -1.4 -3.6 GntR family transcriptional regulator compare
Atu0641 -1.4 -2.5 hypothetical protein compare
Atu2237 -1.4 -2.5 cytochrome c1 compare
Atu4166 -1.4 -1.6 UDP-glucose 4-epimerase compare
Atu4373 -1.4 -4.2 LacI family transcriptional regulator compare
Atu5540 -1.4 -0.7 hypothetical protein compare
Atu0079 -1.4 -4.3 Atu0079-1 mutant of pfkB family carbohydrate kinase compare
Atu4743 -1.4 -4.1 LacI family transcriptional regulator compare
Atu0981 -1.4 -5.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu3075 -1.3 -3.5 TetR family transcriptional regulator compare
Atu1770 -1.3 -5.1 glutamine synthetase compare
Atu5517 -1.3 -1.3 hypothetical protein compare
Atu3783 -1.3 -7.2 glutamate synthase subunit beta compare
Atu1902 -1.3 -3.0 transketolase compare
Atu1454 -1.3 -3.3 siroheme synthase compare
Atu2249 -1.3 -0.9 hypothetical protein compare
Atu0119 -1.3 -0.9 hypothetical protein compare
Atu2159 -1.3 -4.0 outer membrane protein compare
Atu1225 -1.3 -0.9 hypothetical protein compare
Atu3429 -1.3 -1.1 hypothetical protein compare
Atu5075 -1.3 -1.9 GntR family transcriptional regulator compare
Atu4655 -1.2 -6.2 ROK family transcriptional regulator compare
Atu2192 -1.2 -1.1 hypothetical protein compare
Atu0769 -1.2 -0.8 protoheme IX farnesyltransferase compare
Atu0533 -1.2 -1.2 putative inhibitor of septum formation compare
Atu0926 -1.2 -3.0 hypothetical protein compare
Atu1028 -1.2 -1.2 hypothetical protein compare
Atu3913 -1.2 -3.6 biotin carboxylase compare
Atu4616 -1.2 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu0678 -1.2 -2.0 histidyl-tRNA synthetase compare
Atu3678 -1.2 -2.5 siderophore biosynthesis protein compare
Atu4096 -1.2 -4.0 nicotinate-nucleotide pyrophosphorylase compare
Atu6045 -1.2 -0.8 replication protein C compare
Atu2472 -1.2 -1.1 hypothetical protein compare
Atu2045 -1.2 -2.6 HFLK protein compare
Atu0520 -1.2 -2.2 chemotaxis receiver protein compare
Atu1685 -1.2 -0.8 hypothetical protein compare
Atu2745 -1.1 -6.4 acetyl-coenzyme A synthetase compare
Atu0142 -1.1 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu3259 -1.1 -6.0 dehydrogenase compare
Atu0925 -1.1 -1.5 hypothetical protein compare
Atu6067 -1.1 -2.0 conserved hypothetical protein compare
Atu0636 -1.1 -3.4 hypothetical protein compare
Atu1952 -1.1 -1.1 hypothetical protein compare
Atu4841 -1.1 -5.2 DeoR family transcriptional regulator compare
Atu2800 -1.1 -2.3 precorrin-3B C17-methyltransferase compare
Atu0501 -1.1 -5.5 acyl-CoA dehydrogenase compare
Atu4617 -1.1 -4.8 dTDP-D-glucose-4,6-dehydratase compare
Atu0566 -1.1 -1.0 hypothetical protein compare


Specific Phenotypes

For 34 genes in this experiment

For carbon source D-Saccharic acid potassium salt in Agrobacterium fabrum C58

For carbon source D-Saccharic acid potassium salt across organisms