Experiment set2IT056 for Pseudomonas fluorescens GW456-L13

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Trisodium citrate dihydrate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
PfGW456L13_2306 -6.2 -7.4 FIG014801: Cation ABC transporter, periplasmic cation-binding protein compare
PfGW456L13_3547 -6.1 -6.0 Cobalt-zinc-cadmium resistance protein CzcD conserved
PfGW456L13_959 -6.1 -10.9 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) conserved
PfGW456L13_2307 -5.8 -6.9 FIG049111: Hypothetical protein in pyoverdin gene cluster compare
PfGW456L13_2304 -5.7 -5.5 ABC transporter in pyoverdin gene cluster, permease component compare
PfGW456L13_2305 -5.4 -5.2 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
PfGW456L13_4524 -5.3 -8.8 Tricarboxylate transport transcriptional regulator TctD conserved
PfGW456L13_2384 -5.2 -18.4 TonB-dependent siderophore receptor compare
PfGW456L13_958 -5.0 -11.8 Cd(II)/Pb(II)-responsive transcriptional regulator conserved
PfGW456L13_2303 -4.8 -10.4 ABC transporter in pyoverdin gene cluster, periplasmic component compare
PfGW456L13_2309 -4.6 -6.0 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
PfGW456L13_4526 -4.4 -11.6 Tricarboxylate transport protein TctC conserved
PfGW456L13_2308 -4.1 -6.0 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
PfGW456L13_1354 -4.0 -10.3 DedA protein compare
PfGW456L13_4527 -3.3 -8.7 tricarboxylate transporter component TctB (from data) conserved
PfGW456L13_4528 -3.1 -11.1 Tricarboxylate transport membrane protein TctA conserved
PfGW456L13_1440 -3.0 -7.5 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) compare
PfGW456L13_2182 -2.7 -7.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
PfGW456L13_2256 -2.4 -11.9 sensor histidine kinase/response regulator compare
PfGW456L13_4523 -2.3 -7.5 Tricarboxylate transport sensor protein TctE conserved
PfGW456L13_635 -2.2 -12.1 Uncharacterized transporter, similarity to citrate transporter conserved
PfGW456L13_4525 -1.9 -8.4 Tricarboxylate porin OpdH conserved
PfGW456L13_3985 -1.8 -9.7 hypothetical protein compare
PfGW456L13_634 -1.6 -5.9 Integral membrane protein TerC compare
PfGW456L13_4514 -1.4 -5.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
PfGW456L13_1688 -1.2 -5.1 Predicted ATPase related to phosphate starvation-inducible protein PhoH conserved
PfGW456L13_2290 -1.2 -5.1 Acyclic terpenes utilization regulator AtuR, TetR family compare
PfGW456L13_2862 -1.0 -5.9 Bacteriophage N4 adsorption protein A compare
PfGW456L13_883 +1.0 6.2 O-antigen acetylase compare
PfGW456L13_4516 +1.4 5.8 RNA polymerase sigma-H factor AlgT compare


Specific phenotypes for carbon source Trisodium citrate dihydrate across organisms