Experiment set2IT056 for Pseudomonas simiae WCS417

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.7 -1.6 deoxycytidine triphosphate deaminase compare
PS417_00185 -4.1 -6.1 tryptophan synthase subunit beta compare
PS417_27195 -3.9 -1.8 N-acetylglutamate synthase compare
PS417_27040 -3.1 -5.1 3-phosphoglycerate dehydrogenase compare
PS417_23810 -3.0 -13.7 acetolactate synthase 3 catalytic subunit compare
PS417_18560 -2.9 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -2.9 -11.6 ketol-acid reductoisomerase compare
PS417_18585 -2.8 -7.1 3-isopropylmalate dehydrogenase compare
PS417_25940 -2.8 -9.3 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_24155 -2.8 -4.7 ATP-binding protein compare
PS417_23545 -2.7 -3.6 gamma-glutamyl kinase compare
PS417_25720 -2.7 -8.4 anthranilate synthase component II compare
PS417_17420 -2.7 -6.9 ethanol oxidation regulatory protein ercA (from data) compare
PS417_02510 -2.5 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_16570 -2.5 -13.3 isocitrate lyase compare
PS417_18595 -2.5 -4.6 3-isopropylmalate dehydratase compare
PS417_24745 -2.5 -4.9 gamma-glutamyl phosphate reductase compare
PS417_01575 -2.5 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27135 -2.5 -1.2 glutamine synthetase compare
PS417_24835 -2.4 -4.9 hypothetical protein compare
PS417_26730 -2.4 -1.6 pyrroline-5-carboxylate reductase compare
PS417_26745 -2.4 -5.1 methionine biosynthesis protein MetW compare
PS417_17490 -2.4 -3.1 ABC transporter ATP-binding protein compare
PS417_01565 -2.4 -5.7 imidazole glycerol phosphate synthase compare
PS417_18600 -2.3 -4.4 isopropylmalate isomerase compare
PS417_17415 -2.3 -8.1 histidine kinase compare
PS417_18530 -2.3 -7.1 O-succinylhomoserine sulfhydrylase compare
PS417_26740 -2.3 -9.4 homoserine acetyltransferase compare
PS417_25920 -2.2 -8.5 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_23110 -2.2 -11.5 2-isopropylmalate synthase compare
PS417_26040 -2.2 -4.6 malate synthase compare
PS417_17480 -2.1 -8.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_08245 -2.1 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16465 -2.1 -8.8 sirohydrochlorin ferrochelatase compare
PS417_25710 -2.1 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_12290 -2.1 -8.2 sulfite reductase compare
PS417_08230 -2.1 -3.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26890 -2.1 -6.8 dihydroxy-acid dehydratase compare
PS417_25725 -2.0 -10.2 anthranilate synthase component I compare
PS417_25715 -2.0 -4.8 anthranilate phosphoribosyltransferase compare
PS417_21750 -2.0 -13.8 acetyl-CoA synthetase compare
PS417_04420 -2.0 -8.7 histidinol dehydrogenase compare
PS417_17425 -2.0 -4.2 hypothetical protein compare
PS417_08205 -2.0 -6.1 acetyltransferase compare
PS417_01580 -2.0 -2.3 imidazole glycerol phosphate synthase compare
PS417_08730 -2.0 -3.2 cytochrome C compare
PS417_25930 -2.0 -6.7 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_07640 -2.0 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05595 -2.0 -9.5 ornithine carbamoyltransferase compare
PS417_17435 -1.9 -7.2 dehydrogenase compare
PS417_17450 -1.9 -5.9 amino acid ABC transporter substrate-binding protein compare
PS417_14075 -1.8 -3.2 hypothetical protein compare
PS417_20985 -1.8 -4.6 porin compare
PS417_08125 -1.8 -1.3 prephenate dehydratase compare
PS417_01850 -1.8 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01605 -1.8 -1.3 phosphoglycerate mutase compare
PS417_04415 -1.8 -7.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01855 -1.8 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -1.8 -6.9 acetolactate synthase 3 regulatory subunit compare
PS417_17485 -1.7 -6.9 membrane protein compare
PS417_01560 -1.7 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_02000 -1.7 -9.5 glutamate synthase compare
PS417_17495 -1.7 -6.0 multidrug ABC transporter permease compare
PS417_17455 -1.7 -3.7 cytochrome C compare
PS417_24765 -1.7 -3.6 membrane protein compare
PS417_02005 -1.7 -9.3 glutamate synthase compare
PS417_17505 -1.7 -4.7 LuxR family transcriptional regulator compare
PS417_08225 -1.6 -5.8 acetolactate synthase compare
PS417_21035 -1.6 -8.7 multidrug transporter compare
PS417_20610 -1.6 -1.8 hypothetical protein compare
PS417_27875 -1.6 -7.6 histidine kinase compare
PS417_02415 -1.6 -3.8 phosphoserine phosphatase compare
PS417_00180 -1.6 -2.1 tryptophan synthase subunit alpha compare
PS417_02895 -1.6 -2.5 precorrin-6Y C5,15-methyltransferase compare
PS417_20160 -1.5 -5.0 cysteine synthase compare
PS417_27035 -1.5 -3.8 FAD-linked oxidase compare
PS417_08195 -1.5 -6.1 hypothetical protein compare
PS417_01290 -1.5 -2.3 ADP-ribose diphosphatase compare
PS417_04860 -1.5 -7.4 ATPase compare
PS417_01570 -1.5 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27795 -1.4 -1.3 orotate phosphoribosyltransferase compare
PS417_20665 -1.4 -5.5 hypothetical protein compare
PS417_27315 -1.4 -1.4 hypothetical protein compare
PS417_15915 -1.3 -1.7 hypothetical protein compare
PS417_27435 -1.3 -5.4 polyphosphate kinase compare
PS417_08130 -1.3 -2.1 aspartate aminotransferase compare
PS417_27300 -1.3 -1.2 cell division protein ZapA compare
PS417_21210 -1.3 -2.2 amidotransferase compare
PS417_08200 -1.2 -3.4 hypothetical protein compare
PS417_08220 -1.2 -1.0 epimerase compare
PS417_08025 -1.2 -1.3 acetylornithine aminotransferase compare
PS417_03380 -1.2 -1.6 hypothetical protein compare
PS417_23900 -1.2 -5.5 poly(A) polymerase compare
PS417_12310 -1.2 -6.8 methionine synthase compare
PS417_12855 -1.2 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08155 -1.1 -2.0 integration host factor subunit beta compare
PS417_26770 -1.1 -2.8 tRNA (guanine-N7)-methyltransferase compare
PS417_04180 -1.1 -2.9 GntR family transcriptional regulator compare
PS417_05840 -1.0 -1.5 LuxR family transcriptional regulator compare
PS417_24840 -1.0 -1.3 hypothetical protein compare
PS417_05165 -1.0 -2.2 cytosol aminopeptidase compare
PS417_11485 -1.0 -1.5 AraC family transcriptional regulator compare
PS417_13730 -1.0 -2.1 hypothetical protein compare
PS417_26240 -1.0 -1.9 N-methylproline demethylase compare
PS417_09725 -1.0 -6.3 transporter compare
PS417_04225 -1.0 -1.6 conjugal transfer protein TraR compare
PS417_26995 -1.0 -5.3 phosphoserine phosphatase compare
PS417_05065 -1.0 -1.6 hypothetical protein compare
PS417_19630 -0.9 -2.6 LuxR family transcriptional regulator compare
PS417_28355 -0.9 -3.0 cardiolipin synthetase compare
PS417_24460 -0.9 -2.3 hypothetical protein compare
PS417_14940 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_02365 -0.9 -2.5 hypothetical protein compare
PS417_16990 -0.9 -5.3 acyl-CoA dehydrogenase compare
PS417_19965 -0.9 -5.7 histidine kinase compare
PS417_04340 -0.9 -3.5 ribosome hibernation promoting factor HPF compare
PS417_10010 -0.9 -2.9 Replication protein P compare
PS417_04595 -0.9 -2.4 cell division protein MraZ compare
PS417_21475 -0.9 -1.4 HAD family hydrolase compare
PS417_16490 -0.9 -1.1 cell division protein FtsK compare
PS417_17460 -0.9 -4.9 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_26510 -0.9 -5.1 5,10-methylenetetrahydrofolate reductase compare
PS417_04585 -0.9 -1.3 hypothetical protein compare
PS417_17645 -0.9 -1.3 RND transporter compare
PS417_16105 -0.9 -2.6 LysR family transcriptional regulator compare
PS417_07455 -0.9 -1.5 glutamine amidotransferase compare
PS417_10600 -0.9 -1.8 hypothetical protein compare
PS417_27535 -0.9 -4.6 chemotaxis protein CheY compare
PS417_20125 -0.8 -2.7 phosphoribosylglycinamide formyltransferase compare
PS417_05985 -0.8 -2.9 chemotaxis protein CheY compare
PS417_06200 -0.8 -3.9 protein-PII uridylyltransferase compare
PS417_22570 -0.8 -0.8 H-NS histone compare
PS417_04375 -0.8 -2.3 ABC transporter ATP-binding protein compare
PS417_26615 -0.8 -3.4 triphosphoribosyl-dephospho-CoA synthase compare
PS417_27010 -0.8 -5.2 threonine dehydratase compare
PS417_13255 -0.8 -1.4 ABC transporter compare
PS417_22990 -0.8 -0.8 iron dicitrate transport regulator FecR compare
PS417_26985 -0.8 -2.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_16715 -0.7 -1.2 DoxX family protein compare
PS417_07410 -0.7 -2.1 hypothetical protein compare
PS417_23580 -0.7 -0.8 peptidylprolyl isomerase compare
PS417_19195 -0.7 -2.3 hypothetical protein compare
PS417_01620 -0.7 -1.8 preprotein translocase subunit SecB compare
PS417_12655 -0.7 -3.1 methionine aminopeptidase compare
PS417_28030 -0.7 -2.2 hypothetical protein compare
PS417_13445 -0.7 -1.4 D-aminopeptidase compare
PS417_28220 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_27305 -0.7 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_02575 -0.7 -1.8 membrane protein compare
PS417_01710 -0.7 -2.9 histidine utilization repressor compare
PS417_27705 -0.7 -1.1 amino acid dehydrogenase compare
PS417_04965 -0.7 -1.4 hypothetical protein compare
PS417_04875 -0.7 -0.9 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06500 -0.7 -1.0 hypothetical protein compare
PS417_23775 -0.7 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_13455 -0.7 -2.1 alkaline proteinase inhibitor compare
PS417_24290 -0.7 -1.9 hypothetical protein compare
PS417_24125 -0.7 -2.3 hypothetical protein compare
PS417_10535 -0.7 -3.9 hypothetical protein compare
PS417_03300 -0.7 -2.4 alanine acetyltransferase compare
PS417_09010 -0.7 -1.7 phosphohistidine phosphatase compare
PS417_08860 -0.7 -2.5 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_24370 -0.7 -0.7 (2Fe-2S)-binding protein compare
PS417_22500 -0.7 -4.4 porin compare
PS417_20480 -0.7 -2.3 hypothetical protein compare
PS417_09085 -0.7 -1.0 hypothetical protein compare
PS417_28020 -0.7 -1.0 chorismate--pyruvate lyase compare
PS417_00075 -0.7 -1.3 hypothetical protein compare
PS417_05900 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_21055 -0.7 -2.1 threonyl-tRNA synthetase compare
PS417_14085 -0.7 -2.2 hypothetical protein compare
PS417_27295 -0.7 -2.3 hypothetical protein compare
PS417_04305 -0.6 -0.8 aspartate ammonia-lyase compare
PS417_15780 -0.6 -1.7 membrane protein compare
PS417_23095 -0.6 -0.7 exodeoxyribonuclease compare
PS417_18105 -0.6 -0.7 iron-dicitrate transporter substrate-binding subunit compare
PS417_00030 -0.6 -2.4 hypothetical protein compare
PS417_22115 -0.6 -1.6 transcriptional regulator compare
PS417_12740 -0.6 -1.7 secretion protein HlyD compare
PS417_13990 -0.6 -1.3 LysR family transcriptional regulator compare
PS417_02150 -0.6 -3.3 potassium/proton antiporter compare
PS417_24810 -0.6 -3.6 aldehyde dehydrogenase compare
PS417_27005 -0.6 -0.7 membrane protein compare
PS417_18435 -0.6 -1.4 hypothetical protein compare
PS417_02950 -0.6 -1.1 tRNA-dihydrouridine synthase B compare
PS417_10205 -0.6 -2.4 hypothetical protein compare
PS417_08685 -0.6 -1.0 flagellar hook-length control protein FliK compare
PS417_14840 -0.6 -1.6 abortive phage infection protein compare
PS417_25270 -0.6 -2.0 NrdR family transcriptional regulator compare
PS417_09615 -0.6 -2.3 glycosyl transferase family 1 compare
PS417_05445 -0.6 -0.8 DNA mismatch repair protein MutT compare
PS417_19555 -0.6 -2.1 RNA polymerase sigma70 compare
PS417_09150 -0.6 -1.4 energy transducer TonB compare
PS417_15085 -0.6 -2.6 ATPase AAA compare
PS417_26720 -0.6 -2.2 twitching motility protein PilT compare
PS417_20340 -0.6 -1.2 hypothetical protein compare
PS417_20545 -0.6 -3.2 porin compare
PS417_12005 -0.6 -1.4 hypothetical protein compare
PS417_25895 -0.6 -1.4 glyoxalase compare
PS417_25815 -0.6 -2.0 magnesium transporter ApaG compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas simiae WCS417

For carbon source Sodium Fumarate dibasic across organisms