Experiment set2IT055 for Pseudomonas simiae WCS417

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -4.6 -5.6 3-phosphoglycerate dehydrogenase compare
PS417_08220 -4.2 -1.6 epimerase compare
PS417_00185 -3.4 -5.5 tryptophan synthase subunit beta compare
PS417_27795 -3.3 -1.8 orotate phosphoribosyltransferase compare
PS417_20985 -3.2 -4.5 porin compare
PS417_06375 -3.2 -1.7 deoxycytidine triphosphate deaminase compare
PS417_17490 -3.2 -3.7 ABC transporter ATP-binding protein compare
PS417_25710 -3.1 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_08225 -2.9 -7.6 acetolactate synthase compare
PS417_17420 -2.9 -9.6 ethanol oxidation regulatory protein ercA (from data) compare
PS417_01580 -2.9 -2.1 imidazole glycerol phosphate synthase compare
PS417_26040 -2.8 -5.1 malate synthase compare
PS417_18600 -2.7 -3.9 isopropylmalate isomerase compare
PS417_25940 -2.7 -7.7 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_26890 -2.7 -8.4 dihydroxy-acid dehydratase compare
PS417_04415 -2.6 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08230 -2.6 -2.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23800 -2.5 -10.6 ketol-acid reductoisomerase compare
PS417_16555 -2.5 -3.4 cupin compare
PS417_08730 -2.5 -3.1 cytochrome C compare
PS417_17415 -2.5 -4.0 histidine kinase compare
PS417_25725 -2.5 -12.7 anthranilate synthase component I compare
PS417_02510 -2.4 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24745 -2.4 -4.1 gamma-glutamyl phosphate reductase compare
PS417_17425 -2.4 -4.2 hypothetical protein compare
PS417_23110 -2.4 -9.6 2-isopropylmalate synthase compare
PS417_01855 -2.4 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_04420 -2.3 -9.0 histidinol dehydrogenase compare
PS417_02005 -2.3 -11.1 glutamate synthase compare
PS417_08195 -2.3 -9.6 hypothetical protein compare
PS417_23805 -2.2 -5.9 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -2.2 -11.7 acetolactate synthase 3 catalytic subunit compare
PS417_24835 -2.2 -5.8 hypothetical protein compare
PS417_18585 -2.2 -4.3 3-isopropylmalate dehydrogenase compare
PS417_18530 -2.2 -5.9 O-succinylhomoserine sulfhydrylase compare
PS417_17450 -2.2 -3.1 amino acid ABC transporter substrate-binding protein compare
PS417_24155 -2.2 -3.6 ATP-binding protein compare
PS417_21750 -2.2 -13.3 acetyl-CoA synthetase compare
PS417_18560 -2.1 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23545 -2.1 -2.8 gamma-glutamyl kinase compare
PS417_00180 -2.1 -3.5 tryptophan synthase subunit alpha compare
PS417_23995 -2.1 -1.1 preprotein translocase subunit SecG compare
PS417_26740 -2.1 -7.8 homoserine acetyltransferase compare
PS417_26745 -2.1 -6.8 methionine biosynthesis protein MetW compare
PS417_16570 -2.1 -8.2 isocitrate lyase compare
PS417_17495 -2.1 -6.7 multidrug ABC transporter permease compare
PS417_01560 -2.1 -2.9 imidazoleglycerol-phosphate dehydratase compare
PS417_01850 -2.0 -7.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16465 -2.0 -8.0 sirohydrochlorin ferrochelatase compare
PS417_05595 -1.9 -7.6 ornithine carbamoyltransferase compare
PS417_18595 -1.9 -2.9 3-isopropylmalate dehydratase compare
PS417_25720 -1.9 -5.5 anthranilate synthase component II compare
PS417_08125 -1.9 -1.4 prephenate dehydratase compare
PS417_25715 -1.8 -4.3 anthranilate phosphoribosyltransferase compare
PS417_24765 -1.8 -3.7 membrane protein compare
PS417_20665 -1.8 -7.0 hypothetical protein compare
PS417_25920 -1.8 -8.7 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_02000 -1.8 -8.7 glutamate synthase compare
PS417_27195 -1.7 -1.6 N-acetylglutamate synthase compare
PS417_17455 -1.7 -4.6 cytochrome C compare
PS417_17435 -1.7 -9.4 dehydrogenase compare
PS417_01565 -1.7 -6.2 imidazole glycerol phosphate synthase compare
PS417_25930 -1.7 -5.4 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_08205 -1.6 -4.6 acetyltransferase compare
PS417_02720 -1.6 -1.3 TetR family transcriptional regulator compare
PS417_05975 -1.6 -1.0 chemotaxis protein CheW compare
PS417_17485 -1.6 -5.1 membrane protein compare
PS417_08245 -1.6 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01605 -1.5 -1.7 phosphoglycerate mutase compare
PS417_27035 -1.5 -3.5 FAD-linked oxidase compare
PS417_00510 -1.5 -1.1 membrane protein compare
PS417_12290 -1.5 -6.9 sulfite reductase compare
PS417_01575 -1.4 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04860 -1.4 -7.1 ATPase compare
PS417_26990 -1.4 -1.3 RNA pyrophosphohydrolase compare
PS417_11615 -1.3 -2.0 urea ABC transporter ATP-binding protein compare
PS417_20160 -1.3 -4.3 cysteine synthase compare
PS417_08130 -1.3 -2.1 aspartate aminotransferase compare
PS417_20610 -1.3 -1.3 hypothetical protein compare
PS417_28050 -1.3 -5.2 hypothetical protein compare
PS417_17480 -1.3 -3.1 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_07470 -1.3 -1.6 hypothetical protein compare
PS417_26995 -1.3 -5.7 phosphoserine phosphatase compare
PS417_01095 -1.3 -1.6 amino acid ABC transporter ATP-binding protein compare
PS417_21035 -1.2 -7.4 multidrug transporter compare
PS417_02415 -1.2 -3.8 phosphoserine phosphatase compare
PS417_24370 -1.2 -1.1 (2Fe-2S)-binding protein compare
PS417_26730 -1.2 -1.0 pyrroline-5-carboxylate reductase compare
PS417_14655 -1.2 -1.5 lysine transporter LysE compare
PS417_27875 -1.2 -4.7 histidine kinase compare
PS417_11485 -1.2 -1.9 AraC family transcriptional regulator compare
PS417_00385 -1.2 -1.1 Fur family transcriptional regulator compare
PS417_01710 -1.2 -5.3 histidine utilization repressor compare
PS417_08200 -1.2 -2.5 hypothetical protein compare
PS417_27305 -1.2 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_12565 -1.2 -2.0 2-dehydro-3-deoxygluconokinase compare
PS417_14515 -1.2 -2.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_04595 -1.1 -2.8 cell division protein MraZ compare
PS417_12855 -1.1 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01290 -1.1 -1.8 ADP-ribose diphosphatase compare
PS417_16490 -1.1 -2.2 cell division protein FtsK compare
PS417_26850 -1.1 -1.0 twin-arginine translocation pathway signal protein compare
PS417_26510 -1.1 -6.1 5,10-methylenetetrahydrofolate reductase compare
PS417_10535 -1.1 -6.3 hypothetical protein compare
PS417_14200 -1.1 -2.6 hypothetical protein compare
PS417_21510 -1.1 -1.2 histidine kinase compare
PS417_05840 -1.0 -2.4 LuxR family transcriptional regulator compare
PS417_22570 -1.0 -1.0 H-NS histone compare
PS417_06395 -1.0 -2.1 amino acid transporter compare
PS417_23900 -1.0 -5.7 poly(A) polymerase compare
PS417_17505 -1.0 -2.3 LuxR family transcriptional regulator compare
PS417_24460 -1.0 -1.5 hypothetical protein compare
PS417_23315 -1.0 -1.4 transcriptional regulator compare
PS417_07640 -1.0 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01570 -1.0 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_09210 -1.0 -1.0 TetR family transcriptional regulator compare
PS417_27435 -1.0 -4.8 polyphosphate kinase compare
PS417_10405 -1.0 -1.0 filamentous hemagglutinin compare
PS417_19965 -1.0 -5.9 histidine kinase compare
PS417_15665 -1.0 -1.5 hypothetical protein compare
PS417_12310 -1.0 -5.2 methionine synthase compare
PS417_23615 -1.0 -1.5 sulfate transporter compare
PS417_05120 -0.9 -1.9 RNA polymerase subunit sigma-24 compare
PS417_04340 -0.9 -4.3 ribosome hibernation promoting factor HPF compare
PS417_21655 -0.9 -1.3 aspartate kinase compare
PS417_15480 -0.9 -1.6 ABC transporter substrate-binding protein compare
PS417_01995 -0.9 -2.3 hypothetical protein compare
PS417_27535 -0.9 -4.0 chemotaxis protein CheY compare
PS417_10490 -0.9 -2.8 delta-aminolevulinic acid dehydratase compare
PS417_04650 -0.9 -1.2 D-alanine--D-alanine ligase compare
PS417_19930 -0.9 -3.1 DNA methyltransferase compare
PS417_17475 -0.9 -4.4 histidine kinase compare
PS417_04055 -0.9 -2.8 peptide transporter compare
PS417_27005 -0.9 -1.0 membrane protein compare
PS417_13055 -0.8 -2.1 aminotransferase compare
PS417_06945 -0.8 -1.3 membrane protein compare
PS417_10710 -0.8 -1.4 GNAT family acetyltransferase compare
PS417_07995 -0.8 -2.7 LOG family protein compare
PS417_05365 -0.8 -1.2 FAD-binding protein compare
PS417_21705 -0.8 -2.4 arginine N-succinyltransferase compare
PS417_20720 -0.8 -1.5 cbb3-type cytochrome c oxidase subunit I compare
PS417_27705 -0.8 -1.3 amino acid dehydrogenase compare
PS417_01620 -0.8 -1.8 preprotein translocase subunit SecB compare
PS417_18310 -0.8 -1.3 hypothetical protein compare
PS417_23770 -0.8 -1.1 exodeoxyribonuclease V subunit alpha compare
PS417_00480 -0.8 -1.7 hypothetical protein compare
PS417_08155 -0.8 -1.1 integration host factor subunit beta compare
PS417_21480 -0.8 -1.5 23S rRNA pseudouridylate synthase compare
PS417_01950 -0.8 -3.2 malate dehydrogenase compare
PS417_27585 -0.8 -1.5 diaminopimelate epimerase compare
PS417_09725 -0.8 -4.4 transporter compare
PS417_24655 -0.8 -3.0 hypothetical protein compare
PS417_21285 -0.8 -3.2 hypothetical protein compare
PS417_09545 -0.8 -2.0 aldehyde-activating protein compare
PS417_13800 -0.8 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26985 -0.8 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_06125 -0.8 -2.1 hypothetical protein compare
PS417_05985 -0.8 -1.5 chemotaxis protein CheY compare
PS417_01875 -0.8 -1.6 polyhydroxyalkanoic acid system protein compare
PS417_04975 -0.8 -2.3 response regulator receiver protein compare
PS417_04865 -0.8 -1.5 molybdenum cofactor biosynthesis protein MoaC compare
PS417_23725 -0.8 -1.4 methylmalonate-semialdehyde dehydrogenase compare
PS417_18370 -0.7 -1.6 hypothetical protein compare
PS417_27935 -0.7 -1.0 type VI secretion protein compare
PS417_27915 -0.7 -2.1 type VI secretion system protein ImpM compare
PS417_10810 -0.7 -1.0 hypothetical protein compare
PS417_14315 -0.7 -1.5 2,5-dioxovalerate dehydrogenase compare
PS417_15655 -0.7 -2.4 hypothetical protein compare
PS417_01030 -0.7 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_04050 -0.7 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_03300 -0.7 -1.7 alanine acetyltransferase compare
PS417_25815 -0.7 -2.7 magnesium transporter ApaG compare
PS417_04220 -0.7 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_17500 -0.7 -1.9 sulfurtransferase compare
PS417_11450 -0.7 -3.0 AraC family transcriptional regulator compare
PS417_10400 -0.7 -2.1 membrane protein compare
PS417_17160 -0.7 -0.9 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_02800 -0.7 -1.5 acetyltransferase compare
PS417_24290 -0.7 -2.9 hypothetical protein compare
PS417_02150 -0.7 -3.7 potassium/proton antiporter compare
PS417_20645 -0.7 -4.9 membrane protein compare
PS417_16065 -0.7 -1.4 3-phytase compare
PS417_19075 -0.7 -3.5 ABC transporter ATP-binding protein compare
PS417_19030 -0.7 -2.1 sodium:dicarboxylate symporter compare
PS417_03815 -0.7 -1.2 DNA transporter compare
PS417_10210 -0.7 -2.3 hypothetical protein compare
PS417_02820 -0.7 -1.6 urea ABC transporter ATP-binding protein compare
PS417_16535 -0.7 -1.3 NUDIX hydrolase compare
PS417_27010 -0.7 -3.9 threonine dehydratase compare
PS417_20340 -0.7 -1.4 hypothetical protein compare
PS417_17460 -0.7 -3.5 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_16990 -0.7 -3.6 acyl-CoA dehydrogenase compare
PS417_14235 -0.7 -1.9 hypothetical protein compare
PS417_14210 -0.7 -1.9 hypothetical protein compare
PS417_02805 -0.7 -1.3 urease subunit gamma compare
PS417_15885 -0.7 -0.5 GCN5 family acetyltransferase compare
PS417_25390 -0.7 -2.7 MFS transporter compare
PS417_16050 -0.7 -1.9 energy transducer TonB compare
PS417_17470 -0.7 -1.7 LuxR family transcriptional regulator compare
PS417_01920 -0.7 -1.2 ATP-dependent protease subunit HslV compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Potassium acetate in Pseudomonas simiae WCS417

For carbon source Potassium acetate across organisms