Experiment set2IT055 for Pseudomonas sp. RS175

Compare to:

Xanthosine carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_05016 -4.9 -18.9 Glutamate synthase [NADPH] small chain compare
PFR28_00926 -4.7 -3.2 hypothetical protein compare
PFR28_03697 -4.7 -18.2 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_05015 -4.7 -28.7 Glutamate synthase [NADPH] large chain compare
PFR28_03699 -4.6 -7.7 Acetolactate synthase isozyme 3 large subunit compare
PFR28_04278 -4.5 -15.1 Dihydroxy-acid dehydratase compare
PFR28_02824 -4.4 -8.9 3-isopropylmalate dehydratase large subunit compare
PFR28_02821 -4.4 -17.8 3-isopropylmalate dehydrogenase compare
PFR28_00186 -4.4 -7.6 ATP phosphoribosyltransferase compare
PFR28_03143 -4.4 -16.6 hypothetical protein compare
PFR28_04933 -4.2 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_02733 -4.1 -4.1 Ribokinase compare
PFR28_04932 -4.1 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_01930 -3.9 -5.2 HTH-type transcriptional regulator McbR compare
PFR28_00187 -3.9 -14.6 Histidinol dehydrogenase compare
PFR28_03724 -3.8 -9.9 Glucose-6-phosphate isomerase compare
PFR28_04929 -3.7 -6.1 Histidine biosynthesis bifunctional protein HisB compare
PFR28_00561 -3.7 -4.4 Phosphogluconate dehydratase compare
PFR28_03698 -3.7 -12.3 Acetolactate synthase isozyme 3 small subunit compare
PFR28_03860 -3.7 -5.0 putative murein peptide carboxypeptidase compare
PFR28_04842 -3.6 -7.5 D-3-phosphoglycerate dehydrogenase compare
PFR28_04986 -3.6 -8.1 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03714 -3.6 -14.9 RNA polymerase-binding transcription factor DksA compare
PFR28_02811 -3.4 -9.3 Amidophosphoribosyltransferase compare
PFR28_00573 -3.4 -10.2 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04930 -3.4 -11.3 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04308 -3.3 -5.2 Amino-acid acetyltransferase compare
PFR28_03217 -3.3 -3.2 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_03844 -3.3 -5.6 Thiamine-phosphate synthase compare
PFR28_04064 -3.3 -5.8 Ribosomal RNA small subunit methyltransferase A compare
PFR28_05125 -3.2 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03363 -3.2 -16.0 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04345 -3.1 -17.0 Polyphosphate kinase compare
PFR28_03843 -3.1 -7.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_01365 -2.9 -5.8 hypothetical protein compare
PFR28_01366 -2.9 -10.2 Sulfite reductase [ferredoxin] compare
PFR28_03429 -2.9 -6.5 Thiamine-phosphate synthase compare
PFR28_03144 -2.9 -8.2 Uric acid degradation bifunctional protein PucL compare
PFR28_03718 -2.9 -6.9 Transcriptional regulatory protein ZraR compare
PFR28_00305 -2.9 -7.6 2-isopropylmalate synthase compare
PFR28_04252 -2.9 -8.5 Thiazole synthase compare
PFR28_03596 -2.8 -4.3 Transcriptional regulator MraZ compare
PFR28_02603 -2.8 -8.1 Siroheme synthase compare
PFR28_04202 -2.8 -8.2 5,10-methylenetetrahydrofolate reductase compare
PFR28_01142 -2.7 -13.4 Transaldolase compare
PFR28_03145 -2.6 -2.1 allantoicase compare
PFR28_02735 -2.5 -5.8 Ribose import permease protein RbsC compare
PFR28_05105 -2.5 -9.9 Phosphoserine phosphatase SerB2 compare
PFR28_04071 -2.5 -1.7 Multifunctional CCA protein compare
PFR28_02736 -2.5 -7.4 Arabinose import ATP-binding protein AraG compare
PFR28_02737 -2.4 -3.6 Ribose import binding protein RbsB compare
PFR28_04245 -2.4 -11.9 Homoserine O-succinyltransferase compare
PFR28_05042 -2.4 -2.8 hypothetical protein compare
PFR28_05139 -2.3 -3.9 hypothetical protein compare
PFR28_03223 -2.3 -12.1 GTP pyrophosphokinase compare
PFR28_04485 -2.3 -3.4 Phosphate-specific transport system accessory protein PhoU compare
PFR28_03551 -2.2 -5.8 Cyclic pyranopterin monophosphate synthase compare
PFR28_01006 -2.2 -7.9 Molybdopterin molybdenumtransferase compare
PFR28_01064 -2.2 -10.0 hypothetical protein conserved
PFR28_04048 -2.2 -8.8 Phosphoglycolate phosphatase compare
PFR28_04985 -2.1 -4.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04246 -2.1 -8.4 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02810 -2.0 -11.1 O-succinylhomoserine sulfhydrylase compare
PFR28_05071 -2.0 -5.5 D-inositol-3-phosphate glycosyltransferase compare
PFR28_01063 -2.0 -13.1 putative xanthine dehydrogenase subunit D conserved
PFR28_04435 -1.9 -6.2 ATP-dependent DNA helicase RecG compare
PFR28_01062 -1.9 -6.5 hypothetical protein conserved
PFR28_03423 -1.9 -8.2 Porin D compare
PFR28_02127 -1.8 -2.4 hypothetical protein compare
PFR28_03146 -1.8 -5.8 Ureidoglycolate lyase compare
PFR28_00780 -1.8 -1.5 hypothetical protein compare
PFR28_03549 -1.8 -2.0 Molybdopterin synthase catalytic subunit compare
PFR28_01209 -1.8 -6.8 Uric acid transporter UacT conserved
PFR28_00403 -1.8 -4.8 Regulator of sigma-E protease RseP compare
PFR28_03111 -1.8 -9.5 Hydroxypyruvate isomerase conserved
PFR28_03296 -1.7 -2.0 hypothetical protein compare
PFR28_05078 -1.7 -3.1 hypothetical protein compare
PFR28_05212 -1.7 -9.5 Sensor histidine kinase RcsC compare
PFR28_02823 -1.7 -1.8 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_00927 -1.7 -8.9 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00602 -1.7 -1.7 hypothetical protein compare
PFR28_03387 -1.7 -2.1 hypothetical protein compare
PFR28_00932 -1.7 -14.0 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_02608 -1.6 -2.7 DNA translocase FtsK compare
PFR28_03147 -1.6 -9.1 hypothetical protein compare
PFR28_02496 -1.6 -6.7 Molybdate-binding protein ModA compare
PFR28_01375 -1.6 -3.8 hypothetical protein compare
PFR28_03012 -1.6 -6.2 Phosphate acyltransferase compare
PFR28_05091 -1.5 -9.4 Phosphomethylpyrimidine synthase compare
PFR28_03000 -1.5 -5.7 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_02731 -1.5 -6.6 Pyrimidine-specific ribonucleoside hydrolase RihB compare
PFR28_00054 -1.5 -1.3 hypothetical protein compare
PFR28_03653 -1.5 -3.4 Molybdopterin-synthase adenylyltransferase compare
PFR28_03902 -1.5 -1.2 hypothetical protein compare
PFR28_03413 -1.4 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_03110 -1.4 -8.8 Glyoxylate carboligase conserved
PFR28_00916 -1.4 -10.2 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_00873 -1.4 -4.6 hypothetical protein compare
PFR28_04110 -1.4 -8.8 Malate synthase G compare
PFR28_03530 -1.3 -1.6 hypothetical protein compare
PFR28_00988 -1.3 -6.6 Sensor histidine kinase RcsC compare
PFR28_03414 -1.3 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_02718 -1.3 -3.4 hypothetical protein compare
PFR28_03142 -1.3 -2.2 5-hydroxyisourate hydrolase compare
PFR28_04585 -1.3 -6.4 Chromosome partitioning protein ParA compare
PFR28_00928 -1.3 -2.1 putative sugar transferase EpsL compare
PFR28_01083 -1.3 -4.2 putative copper-importing P-type ATPase A compare
PFR28_00695 -1.3 -1.7 Sulfur carrier protein TusA compare
PFR28_00839 -1.3 -4.2 hypothetical protein compare
PFR28_01003 -1.2 -4.7 hypothetical protein compare
PFR28_02688 -1.2 -1.6 hypothetical protein compare
PFR28_04423 -1.2 -2.8 DNA-directed RNA polymerase subunit omega compare
PFR28_03412 -1.2 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04832 -1.2 -6.5 putative phosphatase compare
PFR28_02009 -1.2 -1.3 HTH-type transcriptional regulator PgrR compare
PFR28_04958 -1.2 -1.6 hypothetical protein compare
PFR28_03369 -1.2 -5.0 Glycerol-3-phosphate regulon repressor compare
PFR28_01587 -1.2 -2.1 hypothetical protein compare
PFR28_01230 -1.2 -3.9 Lon protease compare
PFR28_05104 -1.2 -1.9 hypothetical protein compare
PFR28_02497 -1.2 -6.6 Molybdenum transport system permease protein ModB compare
PFR28_00181 -1.2 -5.7 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_04377 -1.1 -3.7 hypothetical protein compare
PFR28_03635 -1.1 -3.7 Malate:quinone oxidoreductase compare
PFR28_00917 -1.1 -7.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_02872 -1.1 -1.0 hypothetical protein compare
PFR28_04378 -1.1 -2.7 Tyrosine recombinase XerC compare
PFR28_00188 -1.1 -5.4 Histidinol-phosphate aminotransferase compare
PFR28_01005 -1.1 -3.5 Molybdenum cofactor biosynthesis protein B compare
PFR28_03883 -1.1 -4.4 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_02734 -1.1 -2.4 Ribose operon repressor compare
PFR28_04358 -1.1 -2.4 hypothetical protein compare
PFR28_04059 -1.1 -7.4 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_02732 -1.0 -2.4 D-ribose pyranase compare
PFR28_03130 -1.0 -2.1 Streptothricin hydrolase compare
PFR28_00930 -1.0 -4.0 GDP-perosamine synthase compare
PFR28_00425 -1.0 -6.5 Protein-L-isoaspartate O-methyltransferase compare
PFR28_01081 -1.0 -3.2 hypothetical protein compare
PFR28_03721 -1.0 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_05075 -1.0 -7.0 hypothetical protein compare
PFR28_03854 -1.0 -3.6 hypothetical protein compare
PFR28_04992 -1.0 -1.3 hypothetical protein compare
PFR28_05000 -1.0 -2.1 Cell division protein FtsN compare
PFR28_00633 -1.0 -6.7 HTH-type transcriptional regulator TtgR compare
PFR28_03240 -1.0 -1.1 IS110 family transposase ISPfl1 compare
PFR28_03420 -1.0 -3.1 hypothetical protein compare
PFR28_00098 -1.0 -4.6 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_05046 -0.9 -1.1 hypothetical protein compare
PFR28_00179 -0.9 -3.6 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_01265 -0.9 -3.5 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_02125 -0.9 -3.6 Nodulation protein D 2 compare
PFR28_02703 -0.9 -2.0 hypothetical protein compare
PFR28_00688 -0.9 -1.4 hypothetical protein compare
PFR28_04051 -0.9 -3.7 Inner membrane ABC transporter permease protein YdcV compare
PFR28_02800 -0.9 -0.8 hypothetical protein compare
PFR28_00855 -0.9 -3.9 hypothetical protein compare
PFR28_02705 -0.9 -1.1 hypothetical protein compare
PFR28_02268 -0.9 -1.4 hypothetical protein compare
PFR28_01372 -0.9 -1.7 Precorrin-4 C(11)-methyltransferase compare
PFR28_00176 -0.9 -0.8 Lipopolysaccharide export system protein LptC compare
PFR28_01593 -0.9 -2.5 hypothetical protein compare
PFR28_00861 -0.9 -5.5 Chemotaxis protein CheW compare
PFR28_02498 -0.9 -5.5 Vitamin B12 import ATP-binding protein BtuD conserved
PFR28_00500 -0.8 -1.4 hypothetical protein compare
PFR28_05077 -0.8 -4.9 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04052 -0.8 -6.6 hypothetical protein compare
PFR28_03716 -0.8 -3.6 hypothetical protein compare
PFR28_00331 -0.8 -2.6 Tyrosine recombinase XerD compare
PFR28_04492 -0.8 -5.8 Putative glucose-6-phosphate 1-epimerase compare
PFR28_04665 -0.8 -2.0 hypothetical protein compare
PFR28_01084 -0.8 -2.7 hypothetical protein compare
PFR28_02172 -0.8 -2.6 hypothetical protein compare
PFR28_01154 -0.8 -2.1 hypothetical protein compare
PFR28_01836 -0.8 -2.1 Transcriptional regulator SlyA compare
PFR28_04643 -0.8 -1.4 hypothetical protein compare
PFR28_04719 -0.8 -2.7 hypothetical protein compare
PFR28_00983 -0.8 -4.4 Protease HtpX compare
PFR28_00472 -0.8 -2.3 Protein RecA compare
PFR28_04293 -0.8 -4.6 Spermidine/putrescine import ATP-binding protein PotA compare
PFR28_04436 -0.8 -3.3 hypothetical protein compare
PFR28_01156 -0.8 -3.2 hypothetical protein compare
PFR28_01794 -0.8 -2.2 putative tautomerase compare
PFR28_00626 -0.7 -1.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFR28_01939 -0.7 -1.8 Phosphonoacetaldehyde hydrolase compare
PFR28_01610 -0.7 -1.6 hypothetical protein compare
PFR28_00838 -0.7 -4.9 Sensor histidine kinase RcsC compare
PFR28_02426 -0.7 -4.8 HTH-type transcriptional regulator MurR compare
PFR28_02201 -0.7 -1.6 Chaperone SurA compare
PFR28_02562 -0.7 -1.5 hypothetical protein compare
PFR28_03625 -0.7 -5.1 Metalloprotease LoiP compare
PFR28_00007 -0.7 -1.3 RecBCD enzyme subunit RecB compare
PFR28_03666 -0.7 -1.2 hypothetical protein compare
PFR28_02050 -0.7 -2.0 hypothetical protein compare
PFR28_03388 -0.7 -4.7 Quinolinate synthase A compare
PFR28_04698 -0.7 -3.6 hypothetical protein compare
PFR28_02614 -0.7 -3.2 ATP-dependent Clp protease adapter protein ClpS compare
PFR28_01527 -0.7 -3.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PFR28_02057 -0.7 -1.8 2-oxo-tetronate isomerase compare
PFR28_04120 -0.7 -1.1 hypothetical protein compare
PFR28_03521 -0.7 -2.1 DNA repair protein RecO compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Xanthosine in Pseudomonas sp. RS175

For carbon source Xanthosine across organisms