Experiment set2IT055 for Agrobacterium fabrum C58

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -9.1 -6.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1140 -8.5 -5.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1687 -8.4 -5.8 anthranilate phosphoribosyltransferase compare
Atu1308 -8.4 -5.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0038 -8.1 -5.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -7.7 -11.8 anthranilate synthase component I and II compare
Atu2036 -7.3 -8.7 acetolactate synthase III, large subunit compare
Atu2709 -7.2 -16.2 3-isopropylmalate dehydratase, large subunit compare
Atu2650 -7.2 -12.1 glycerol-3-phosphate dehydrogenase compare
Atu0679 -7.1 -4.9 ATP phosphoribosyltransferase compare
Atu1844 -7.1 -4.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0432 -6.9 -9.5 O-succinylhomoserine sulfhydrylase compare
Atu1307 -6.9 -7.6 dihydroorotase compare
Atu0099 -6.8 -10.5 prephenate dehydratase compare
Atu0486 -6.8 -6.6 dihydroorotate dehydrogenase compare
Atu2747 -6.7 -15.1 hypothetical protein compare
Atu2726 -6.7 -23.3 pyruvate carboxylase compare
Atu3783 -6.7 -17.8 glutamate synthase subunit beta compare
Atu0298 -6.6 -7.9 orotidine 5 compare
Atu1850 -6.6 -6.1 phosphoribosylformylglycinamidine synthetase II compare
Atu3706 -6.6 -7.8 D-3-phosphoglycerate dehydrogenase compare
Atu3784 -6.6 -29.1 glutamate synthase large subunit compare
Atu0185 -6.5 -9.0 methylglyoxal synthase compare
Atu1205 -6.5 -13.9 threonine dehydratase compare
Atu0400 -6.4 -6.2 orotate phosphoribosyltransferase compare
Atu2264 -6.3 -14.1 2-isopropylmalate synthase compare
Atu1845 -6.3 -4.5 phosphoribosylformylglycinamidine synthase I compare
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu3754 -6.1 -8.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3885 -6.0 -9.2 inositol monophosphatase compare
Atu2040 -6.0 -5.8 phosphoserine phosphatase compare
Atu1688 -5.9 -5.8 indole-3-glycerol-phosphate synthase compare
Atu3755 -5.8 -5.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2791 -5.8 -10.5 3-isopropylmalate dehydrogenase compare
Atu1075 -5.8 -9.7 amidophosphoribosyltransferase compare
Atu0537 -5.8 -7.9 histidinol dehydrogenase compare
Atu2015 -5.8 -14.8 aminotransferase compare
Atu0678 -5.7 -7.8 histidyl-tRNA synthetase compare
Atu1588 -5.6 -11.3 homoserine dehydrogenase compare
Atu3739 -5.6 -2.9 phosphoglycerate kinase compare
Atu0043 -5.3 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu0647 -5.2 -7.2 phosphoribosylamine--glycine ligase compare
Atu2718 -5.1 -9.2 homoserine O-succinyltransferase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu3482 -5.1 -11.8 pantoate--beta-alanine ligase compare
Atu0039 -5.0 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -5.0 -8.4 dihydroorotase compare
Atu0184 -4.8 -4.5 glucokinase compare
Atu1686 -4.8 -22.0 peptidyl-prolyl cis-trans isomerse D compare
Atu1141 -4.8 -8.5 Phosphoribosylglycinamide synthetase compare
Atu0030 -4.6 -2.6 phosphocarrier protein HPr compare
Atu0792 -4.6 -6.5 hypothetical protein compare
Atu0598 -4.5 -10.7 phosphogluconate dehydratase compare
Atu3483 -4.5 -8.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2548 -4.4 -19.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4075 -4.3 -10.3 glycogen synthase compare
Atu0641 -4.3 -5.5 hypothetical protein compare
Atu0592 -4.2 -11.5 ABC transporter, membrane spanning protein compare
Atu1589 -4.0 -12.5 aminotransferase, class I compare
Atu2790 -4.0 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu0591 -3.8 -16.7 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu0595 -3.8 -13.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0593 -3.7 -10.8 ABC transporter, membrane spanning protein compare
Atu1446 -3.7 -3.6 two component response regulator compare
Atu3469 -3.7 -4.3 phosphoglyceromutase compare
Atu0723 -3.6 -2.4 FAD dependent oxidoreductase compare
Atu1620 -3.5 -16.1 triosephosphate isomerase compare
Atu3731 -3.4 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1456 -3.4 -10.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu4096 -3.3 -11.9 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -3.3 -15.1 L-aspartate oxidase compare
Atu3999 -3.2 -4.2 dithiobiotin synthetase compare
Atu4098 -3.2 -15.8 quinolinate synthetase compare
Atu2155 -3.2 -20.9 methionine synthase compare
Atu1030 -3.2 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1462 -3.1 -18.2 glycine cleavage system protein P2 compare
Atu0769 -3.0 -3.2 protoheme IX farnesyltransferase compare
Atu3288 -3.0 -11.4 hydroxyethylthiazole kinase compare
Atu1685 -2.9 -2.0 hypothetical protein compare
Atu2569 -2.9 -17.1 thiamine biosynthesis protein compare
Atu1454 -2.8 -8.2 siroheme synthase compare
Atu1463 -2.8 -7.9 glycine cleavage system component H compare
Atu0594 -2.8 -12.3 alpha-glucosidase conserved
Atu3289 -2.8 -4.4 thiamine-phosphate pyrophosphorylase compare
Atu1464 -2.8 -8.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu3290 -2.7 -10.8 phosphomethylpyrimidine kinase compare
Atu3997 -2.6 -16.4 biotin synthetase compare
Atu3998 -2.6 -13.6 8-amino-7-oxononanoate synthase compare
Atu1455 -2.6 -2.8 hypothetical protein compare
Atu4000 -2.3 -13.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu2205 -2.2 -8.9 transcriptional regulator, MarR family compare
Atu1219 -2.2 -1.9 hypothetical protein compare
Atu0040 -2.2 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2209 -2.2 -5.2 pyrroline-5-carboxylate reductase compare
Atu2127 -2.1 -8.5 L-carnitine dehydratase compare
Atu5142 -2.1 -2.8 hypothetical protein compare
Atu4001 -2.1 -8.9 3-oxoacyl-ACP synthase compare
Atu1748 -2.1 -11.8 NIFU-like protein compare
Atu0029 -2.0 -6.4 S-adenosylhomocysteine hydrolase compare
Atu1604 -2.0 -14.2 poly-beta-hydroxybutyrate synthase compare
Atu8115 -2.0 -4.4 Hypothetical Protein compare
Atu6114 -2.0 -2.5 hypothetical protein compare
Atu1457 -1.8 -2.8 hypothetical protein compare
Atu0876 -1.8 -2.0 superoxide dismutase compare
Atu0031 -1.8 -2.1 PTS system, IIA component compare
Atu1572 -1.7 -9.4 hydrolase compare
Atu1359 -1.7 -1.7 dnaK deletion suppressor protein compare
Atu0346 -1.7 -4.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4166 -1.6 -2.0 UDP-glucose 4-epimerase compare
Atu0361 -1.6 -4.0 transcriptional regulator compare
Atu5430 -1.5 -1.2 hypothetical protein compare
Atu0434 -1.4 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4618 -1.4 -9.0 dTDP-rhamnose-3,5-epimerase compare
Atu4317 -1.4 -3.6 TetR family transcriptional regulator compare
Atu0421 -1.4 -2.0 ABC transporter, membrane spanning protein compare
Atu2020 -1.4 -4.9 transcriptional regulator, TetR family compare
Atu4773 -1.3 -2.4 two component response regulator compare
Atu4613 -1.3 -9.9 glycosyltransferase compare
Atu4614 -1.3 -7.5 glycosyltransferase compare
Atu1891 -1.3 -4.0 cobalamin biosynthesis protein compare
Atu0332 -1.3 -6.2 RNA polymerase sigma-54 factor compare
Atu4173 -1.2 -3.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu4677 -1.1 -1.7 hypothetical protein compare
Atu4617 -1.1 -6.9 dTDP-D-glucose-4,6-dehydratase compare
Atu4616 -1.1 -1.8 dTDP-4-dehydrorhamnose reductase compare
Atu3908 -1.1 -7.5 GntR family transcriptional regulator compare
Atu4223 -1.1 -1.8 sarcosine oxidase delta subunit compare
Atu0601 -1.1 -6.6 oxidoreductase compare
Atu1542 -1.1 -4.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3342 -1.0 -4.4 trehalose utilization-like protein compare
Atu2795 -1.0 -5.7 cobalamin biosynthetic protein compare
Atu1774 -1.0 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu2555 -1.0 -3.8 L-lysine 2,3-aminomutase compare
Atu3287 -1.0 -2.6 thiamine biosynthesis associated protein compare
Atu0188 -1.0 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0912 -1.0 -1.5 Na+/H+ antiporter compare
Atu1677 -1.0 -2.9 queuine tRNA-ribosyltransferase compare
Atu0524 -1.0 -4.0 transcriptional regulator, LuxR family compare
Atu2809 -0.9 -4.8 cobalamin biosynthesis protein compare
Atu2770 -0.9 -4.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu8046 -0.9 -2.1 hypothetical protein compare
Atu3518 -0.9 -4.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3496 -0.9 -2.3 hypothetical protein compare
Atu2798 -0.9 -2.6 precorrin-6y methyltransferase compare
Atu0300 -0.9 -4.8 methyltransferase compare
Atu1983 -0.9 -3.8 hypothetical protein compare
Atu2802 -0.8 -4.1 precorrin-8X methylmutase compare
Atu0291 -0.8 -5.4 hypothetical protein compare
Atu0422 -0.8 -1.7 ABC transporter, membrane spanning protein compare
Atu3627 -0.8 -1.2 hypothetical protein compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu0659 -0.8 -3.1 NTP pyrophosphohydrolase, MutT family compare
Atu0189 -0.8 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu2796 -0.8 -4.0 precorrin-4 C11-methyltransferase compare
Atu0026 -0.8 -0.8 hypothetical protein compare
Atu0190 -0.8 -4.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0413 -0.8 -2.2 stress induced protein compare
Atu2804 -0.8 -5.0 cobaltochelatase subunit compare
Atu2801 -0.8 -2.1 precorrin-2 C20 methyltransferase compare
Atu0153 -0.8 -4.0 transcriptional regulator, Fur family compare
Atu1801 -0.8 -1.8 hypothetical protein compare
Atu1737 -0.8 -2.6 hypothetical protein compare
Atu1052 -0.8 -2.4 hypothetical protein compare
Atu0142 -0.8 -1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu2783 -0.7 -3.7 acetyltransferase compare
Atu8158 -0.7 -2.0 hypothetical protein compare
Atu4187 -0.7 -1.3 tRNA-Met compare
Atu2123 -0.7 -1.9 methylenetetrahydrofolate reductase compare
Atu0977 -0.7 -3.4 serine protease DO-like protease compare
Atu2800 -0.7 -1.5 precorrin-3B C17-methyltransferase compare
Atu1028 -0.7 -1.4 hypothetical protein compare
Atu1526 -0.7 -4.9 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu4711 -0.7 -2.3 two component sensor kinase compare
Atu2207 -0.7 -2.1 two component sensor kinase compare
Atu3763 -0.7 -1.1 hypothetical protein compare
Atu2270 -0.7 -1.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu4615 -0.7 -4.6 glucose-1-phosphate thymidylyltransferase compare
Atu1470 -0.7 -0.9 Camphor resistance protein compare
Atu6040 -0.7 -2.1 conjugal transfer protein compare
Atu2684 -0.7 -1.6 hypothetical protein compare
Atu0677 -0.7 -1.5 hypothetical protein compare
Atu1339 -0.7 -1.7 ribonuclease E compare
Atu2793 -0.7 -2.8 cobyrinic acid a,c-diamide synthase compare
Atu3485 -0.7 -4.7 short chain dehydrogenase compare
Atu0837 -0.7 -3.1 transcriptional regulator, MarR family compare
Atu2808 -0.7 -4.3 cobyric acid synthase compare
Atu1076 -0.7 -2.2 colicin V production protein compare
Atu5169 -0.7 -2.1 type IV secretion protein AvhB8 compare
Atu2733 -0.7 -1.8 hypothetical protein compare
Atu0319 -0.7 -1.1 ubiquinone biosynthesis protein compare
Atu1810 -0.7 -1.1 hypothetical protein compare
Atu0701 -0.7 -4.5 GGDEF family protein compare
Atu5155 -0.7 -1.9 MarR family transcriptional regulator compare
Atu0894 -0.6 -1.6 ABC transporter, membrane spanning protein compare
Atu3121 -0.6 -0.9 cold shock protein compare
Atu2805 -0.6 -2.9 cobalamin synthesis protein compare
Atu0966 -0.6 -2.1 hypothetical protein compare
Atu2810 -0.6 -4.1 cobalamin biosynthetic protein compare
Atu2335 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Trehalose dihydrate in Agrobacterium fabrum C58

For carbon source D-Trehalose dihydrate across organisms