Experiment set2IT054 for Magnetospirillum magneticum AMB-1

Compare to:

30_an_nonmag_3

200 most important genes:

  gene name fitness t score description  
AMB_RS15610 -5.4 -3.6 hypothetical protein compare
AMB_RS12355 -5.3 -0.8 ABC transporter ATP-binding protein compare
AMB_RS03045 -5.1 -1.4 hydrogen peroxide-inducible genes activator compare
AMB_RS17350 -4.6 -2.3 rubrerythrin compare
AMB_RS08255 -4.5 -2.0 hypothetical protein compare
AMB_RS00120 -4.4 -3.4 YggS family pyridoxal phosphate-dependent enzyme compare
AMB_RS07010 -4.4 -7.3 ATP-dependent helicase compare
AMB_RS17235 -4.3 -1.3 AsmA family protein compare
AMB_RS02725 -4.3 -1.3 phospholipid carrier-dependent glycosyltransferase compare
AMB_RS05505 -4.3 -6.4 GDP-mannose 4,6-dehydratase compare
AMB_RS20350 -4.3 -8.6 aspartate 1-decarboxylase compare
AMB_RS05435 -4.1 -1.8 ABC transporter permease compare
AMB_RS18590 -4.1 -1.3 glycosyltransferase family 2 protein compare
AMB_RS17335 -4.1 -2.0 N-acyl-L-homoserine lactone synthetase compare
AMB_RS16080 -4.1 -1.4 tRNA-Glu compare
AMB_RS16025 -4.1 -5.0 MFS transporter compare
AMB_RS22800 -4.1 -2.1 glutathione synthase compare
AMB_RS21535 -4.1 -1.1 cyclic nucleotide-binding domain-containing protein compare
AMB_RS07745 -4.0 -1.7 disulfide bond formation protein B compare
AMB_RS00010 -4.0 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS01190 -4.0 -3.9 UbiD family decarboxylase compare
AMB_RS04280 -4.0 -11.4 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS16130 -3.9 -2.6 phosphoglycerate dehydrogenase compare
AMB_RS01815 -3.9 -1.1 hypothetical protein compare
AMB_RS16100 -3.9 -2.2 RNA polymerase sigma factor RpoH compare
AMB_RS14495 -3.9 -10.6 aminotransferase class V-fold PLP-dependent enzyme compare
AMB_RS21290 -3.9 -2.1 DUF4139 domain-containing protein compare
AMB_RS10820 -3.8 -19.4 benzoyl-CoA reductase subunit C compare
AMB_RS19325 -3.7 -12.3 NAD(P)/FAD-dependent oxidoreductase compare
AMB_RS01330 -3.7 -2.5 glycosyltransferase family 39 protein compare
AMB_RS03060 -3.7 -1.3 peptidoglycan editing factor PgeF compare
AMB_RS12385 -3.6 -3.9 alanine--glyoxylate aminotransferase family protein compare
AMB_RS22280 -3.6 -9.0 hypothetical protein compare
AMB_RS01605 -3.6 -1.1 aspartate aminotransferase family protein compare
AMB_RS11380 -3.6 -1.0 hemerythrin compare
AMB_RS10210 -3.6 -16.9 xanthine and CO dehydrogenase maturation factor compare
AMB_RS22235 -3.6 -1.4 RNase adaptor protein RapZ compare
AMB_RS17625 -3.5 -11.5 hopanoid biosynthesis associated radical SAM protein HpnJ compare
AMB_RS00355 -3.5 -6.8 radical SAM protein compare
AMB_RS21385 -3.5 -7.8 helix-turn-helix transcriptional regulator compare
AMB_RS10200 -3.5 -14.8 4-hydroxybenzoyl-CoA reductase subunit alpha compare
AMB_RS23155 -3.4 -0.9 two-component sensor histidine kinase compare
AMB_RS01540 -3.4 -1.0 peptidase M23 compare
AMB_RS03725 -3.4 -8.0 DNA helicase II compare
AMB_RS07660 -3.3 -1.0 hypothetical protein compare
AMB_RS07070 -3.3 -1.9 Crp/Fnr family transcriptional regulator compare
AMB_RS22450 -3.3 -8.5 electron transfer flavoprotein-ubiquinone oxidoreductase compare
AMB_RS00820 -3.3 -3.5 GDP-L-fucose synthase compare
AMB_RS06370 -3.2 -2.2 DNA-binding response regulator compare
AMB_RS24350 -3.2 -1.1 hypothetical protein compare
AMB_RS21435 -3.1 -16.3 methylmalonyl-CoA mutase compare
AMB_RS10195 -3.1 -5.4 4-hydroxybenzoyl-CoA reductase subunit gamma compare
AMB_RS10205 -3.1 -7.3 4-hydroxybenzoyl-CoA reductase subunit beta compare
AMB_RS05500 -3.1 -9.8 GDP-mannose 4,6 dehydratase compare
AMB_RS15295 -3.0 -1.6 iron donor protein CyaY compare
AMB_RS14035 -3.0 -6.2 endopeptidase La compare
AMB_RS24545 -3.0 -0.8 hypothetical protein compare
AMB_RS11195 -3.0 -0.6 sulfate adenylyltransferase subunit 2 compare
AMB_RS05910 -2.9 -0.8 hypothetical protein compare
AMB_RS11640 -2.9 -2.7 UbiX family flavin prenyltransferase compare
AMB_RS19860 -2.9 -11.3 HlyC/CorC family transporter compare
AMB_RS19790 -2.9 -3.2 NAD(P)-dependent oxidoreductase compare
AMB_RS13145 -2.9 -2.9 positive regulator of sigma E activity compare
AMB_RS00695 -2.9 -1.7 gfo/Idh/MocA family oxidoreductase compare
AMB_RS10815 -2.8 -11.2 benzoyl-CoA reductase subunit B compare
AMB_RS22480 -2.8 -0.6 cell division ATP-binding protein FtsE compare
AMB_RS23205 -2.8 -8.0 glycosyl transferase compare
AMB_RS00455 -2.8 -6.8 KR domain-containing protein compare
AMB_RS23245 -2.8 -0.8 Ni,Fe-hydrogenase maturation factor compare
AMB_RS12590 -2.8 -8.5 tetratricopeptide repeat protein compare
AMB_RS20145 -2.7 -0.8 chromosome segregation ATPase compare
AMB_RS10810 -2.7 -7.5 benzoyl-CoA reductase subunit A compare
AMB_RS23210 -2.6 -10.9 glycosyl transferase compare
AMB_RS22580 -2.6 -8.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
AMB_RS10805 -2.6 -8.5 benzoyl-CoA reductase subunit D compare
AMB_RS12920 -2.6 -3.8 exo-beta-1,3-glucanase compare
AMB_RS07110 -2.6 -1.7 Lrp/AsnC family transcriptional regulator compare
AMB_RS21280 -2.5 -2.1 TVP38/TMEM64 family protein compare
AMB_RS23095 -2.5 -6.2 class I SAM-dependent methyltransferase compare
AMB_RS23195 -2.5 -3.9 ABC transporter ATP-binding protein compare
AMB_RS19340 -2.4 -0.5 EamA family transporter compare
AMB_RS11360 -2.4 -4.5 membrane protein compare
AMB_RS12785 -2.4 -3.2 murein transglycosylase compare
AMB_RS00015 -2.4 -3.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AMB_RS01265 -2.4 -0.7 LysR family transcriptional regulator compare
AMB_RS03040 -2.4 -3.5 ABC-type transport system compare
AMB_RS22010 -2.4 -1.3 hypothetical protein compare
AMB_RS05220 -2.4 -0.5 hypothetical protein compare
AMB_RS09295 -2.4 -1.2 carboxymuconolactone decarboxylase family protein compare
AMB_RS02835 -2.3 -1.9 two-component sensor histidine kinase compare
AMB_RS02500 -2.3 -0.9 hypothetical protein compare
AMB_RS12960 -2.3 -1.0 methylmalonyl-CoA epimerase compare
AMB_RS01480 -2.2 -1.3 M48 family peptidase compare
AMB_RS18145 -2.2 -3.1 GntR family transcriptional regulator compare
AMB_RS07700 -2.2 -0.8 hypothetical protein compare
AMB_RS02610 -2.1 -0.6 hypothetical protein compare
AMB_RS19545 -2.1 -1.7 elongation factor 4 compare
AMB_RS00965 -2.1 -1.8 membrane protein compare
AMB_RS01830 -2.1 -0.3 hypothetical protein compare
AMB_RS05510 -2.1 -5.3 glycosyltransferase compare
AMB_RS03205 -2.0 -1.5 DNA recombination/repair protein RecA compare
AMB_RS24000 -2.0 -1.4 glycosyltransferase family 1 protein compare
AMB_RS21750 -2.0 -1.1 DNA-binding response regulator compare
AMB_RS00075 -2.0 -1.2 P-II family nitrogen regulator compare
AMB_RS18100 -2.0 -2.5 DUF2249 domain-containing protein compare
AMB_RS14455 -2.0 -1.4 ABC transporter ATP-binding protein compare
AMB_RS22565 -2.0 -9.1 MucR family transcriptional regulator compare
AMB_RS10120 -1.9 -3.1 DUF1476 domain-containing protein compare
AMB_RS03610 -1.9 -7.9 transcription elongation factor GreA compare
AMB_RS07075 -1.9 -7.5 cytochrome c-552 precursor compare
AMB_RS17450 -1.9 -0.5 DUF1987 domain-containing protein compare
AMB_RS17550 -1.9 -6.1 2-isopropylmalate synthase compare
AMB_RS03780 -1.9 -0.6 hypothetical protein compare
AMB_RS22005 -1.9 -0.7 HD domain-containing protein compare
AMB_RS22575 -1.9 -8.3 GNAT family N-acetyltransferase compare
AMB_RS02525 -1.9 -8.2 U32 family peptidase compare
AMB_RS21185 -1.8 -2.0 GntR family transcriptional regulator compare
AMB_RS22970 -1.8 -1.4 hypothetical protein compare
AMB_RS13510 -1.8 -3.2 cytochrome C protein NapC compare
AMB_RS11820 -1.8 -1.8 transcriptional regulator NrdR compare
AMB_RS01910 -1.8 -0.5 head decoration protein compare
AMB_RS14325 -1.8 -1.7 DUF2066 domain-containing protein compare
AMB_RS14175 -1.8 -1.4 COQ9 family protein compare
AMB_RS17365 -1.8 -5.9 acriflavine resistance protein B compare
AMB_RS15215 -1.8 -4.1 methyltransferase domain-containing protein compare
AMB_RS10705 -1.8 -1.2 hypothetical protein compare
AMB_RS21455 -1.7 -3.9 XRE family transcriptional regulator compare
AMB_RS22315 -1.7 -2.5 membrane protein compare
AMB_RS03110 -1.7 -1.2 membrane protein compare
AMB_RS14565 -1.7 -2.1 sensor histidine kinase compare
AMB_RS11535 -1.6 -0.5 ChbG/HpnK family deacetylase compare
AMB_RS19880 -1.6 -2.4 site-specific tyrosine recombinase XerD compare
AMB_RS14815 -1.6 -4.3 CbbQ/NirQ/NorQ/GpvN family protein compare
AMB_RS21955 -1.6 -0.7 hypothetical protein compare
AMB_RS00970 -1.6 -6.5 DUF1924 domain-containing protein compare
AMB_RS10600 -1.6 -1.8 hypothetical protein compare
AMB_RS00435 -1.6 -10.0 B12-binding domain-containing radical SAM protein compare
AMB_RS12600 -1.6 -0.6 amino acid-binding protein compare
AMB_RS05820 -1.6 -1.2 hypothetical protein compare
AMB_RS11775 -1.6 -11.8 glutamate synthase large subunit compare
AMB_RS20665 -1.6 -0.8 class I SAM-dependent methyltransferase compare
AMB_RS00920 -1.5 -4.7 secretion protein HlyD compare
AMB_RS01655 -1.5 -0.5 hypothetical protein compare
AMB_RS10830 -1.5 -5.2 6-oxocyclohex-1-ene-1-carbonyl-CoA hydratase compare
AMB_RS03990 -1.5 -1.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
AMB_RS00795 -1.5 -7.4 LPS biosynthesis protein compare
AMB_RS11190 -1.5 -2.9 phosphoadenylyl-sulfate reductase compare
AMB_RS00805 -1.5 -8.6 haloacid dehalogenase compare
AMB_RS11780 -1.5 -3.3 glutamate synthase subunit beta compare
AMB_RS22125 -1.5 -4.0 hypothetical protein compare
AMB_RS24330 -1.4 -2.7 DNA-binding protein compare
AMB_RS17845 -1.4 -4.0 hypothetical protein compare
AMB_RS10640 -1.4 -1.8 endolytic transglycosylase MltG compare
AMB_RS08330 -1.4 -1.8 HyaD/HybD family hydrogenase maturation endopeptidase compare
AMB_RS18010 -1.4 -9.2 sensor histidine kinase compare
AMB_RS13530 -1.4 -6.5 periplasmic nitrate reductase subunit alpha compare
AMB_RS00815 -1.4 -6.1 hypothetical protein compare
AMB_RS00810 -1.4 -3.6 hypothetical protein compare
AMB_RS17735 -1.4 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
AMB_RS13515 -1.4 -1.3 nitrate reductase cytochrome c-type subunit compare
AMB_RS18380 -1.4 -1.8 methyl-accepting chemotaxis protein compare
AMB_RS09365 -1.3 -2.7 serine O-acetyltransferase compare
AMB_RS12870 -1.3 -6.2 GNAT family N-acetyltransferase compare
AMB_RS11075 -1.3 -3.4 hypothetical protein compare
AMB_RS04325 -1.3 -3.7 TetR/AcrR family transcriptional regulator compare
AMB_RS12050 -1.3 -1.3 HTH domain-containing protein compare
AMB_RS14620 -1.3 -1.3 ArsR family transcriptional regulator compare
AMB_RS08670 -1.3 -1.6 hypothetical protein compare
AMB_RS15605 -1.3 -3.8 ChbG/HpnK family deacetylase compare
AMB_RS22285 -1.3 -6.6 sulfite exporter TauE/SafE family protein compare
AMB_RS23865 -1.3 -1.3 DUF2786 domain-containing protein compare
AMB_RS09970 -1.3 -0.2 NAD synthetase compare
AMB_RS06775 -1.3 -3.0 two-component system response regulator compare
AMB_RS10350 -1.3 -1.3 DNA polymerase III subunit epsilon compare
AMB_RS15530 -1.3 -3.5 cytochrome c4 compare
AMB_RS17370 -1.3 -4.4 acriflavine resistance protein B compare
AMB_RS02235 -1.3 -2.2 methyltransferase domain-containing protein compare
AMB_RS14190 -1.3 -2.8 cytochrome C biogenesis protein CcsA compare
AMB_RS22325 -1.3 -4.6 4Fe-4S binding domain-containing protein compare
AMB_RS13915 -1.2 -5.1 DNA-binding response regulator compare
AMB_RS14855 -1.2 -1.1 molybdate ABC transporter substrate-binding protein compare
AMB_RS07295 -1.2 -5.9 hypothetical protein compare
AMB_RS13150 -1.2 -2.4 electron transport complex subunit RsxA compare
AMB_RS00470 -1.2 -7.6 hypothetical protein compare
AMB_RS00960 -1.2 -4.2 DNA-binding response regulator compare
AMB_RS15550 -1.2 -3.3 copper chaperone PCu(A)C compare
AMB_RS02375 -1.2 -3.5 class I SAM-dependent methyltransferase compare
AMB_RS16330 -1.2 -2.8 indolepyruvate oxidoreductase compare
AMB_RS02530 -1.2 -5.9 U32 family peptidase compare
AMB_RS13360 -1.2 -3.0 thiol:disulfide oxidoreductase compare
AMB_RS00475 -1.2 -7.5 MBOAT family protein compare
AMB_RS03775 -1.2 -1.9 hypothetical protein compare
AMB_RS06155 -1.2 -2.4 hypothetical protein compare
AMB_RS14505 -1.2 -1.4 carbon monoxide dehydrogenase compare
AMB_RS07865 -1.2 -4.4 ATP-dependent chaperone ClpB compare
AMB_RS09130 -1.2 -5.1 high-affinity branched-chain amino acid ABC transporter permease LivM compare
AMB_RS24510 -1.2 -2.5 hypothetical protein compare
AMB_RS21800 -1.2 -1.2 hypothetical protein compare
AMB_RS09095 -1.2 -1.4 hypothetical protein compare
AMB_RS03595 -1.2 -2.5 aspartyl-tRNA amidotransferase subunit B compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms