Experiment set2IT054 for Agrobacterium fabrum C58

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -8.4 -5.8 anthranilate phosphoribosyltransferase compare
Atu0038 -8.0 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0099 -7.9 -5.5 prephenate dehydratase compare
Atu2726 -7.6 -15.4 pyruvate carboxylase compare
Atu2709 -7.3 -15.7 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -7.2 -11.0 2-isopropylmalate synthase compare
Atu1307 -7.2 -8.6 dihydroorotase compare
Atu1205 -7.2 -11.0 threonine dehydratase compare
Atu2747 -7.1 -13.6 hypothetical protein compare
Atu0679 -7.0 -4.9 ATP phosphoribosyltransferase compare
Atu1844 -7.0 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -7.0 -11.7 glycerol-3-phosphate dehydrogenase compare
Atu0792 -6.9 -9.5 hypothetical protein compare
Atu1750 -6.9 -6.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -6.9 -11.6 acetolactate synthase III, large subunit compare
Atu1588 -6.8 -8.1 homoserine dehydrogenase compare
Atu3706 -6.8 -6.6 D-3-phosphoglycerate dehydrogenase compare
Atu2289 -6.7 -18.0 anthranilate synthase component I and II compare
Atu2718 -6.7 -8.0 homoserine O-succinyltransferase compare
Atu2791 -6.6 -7.9 3-isopropylmalate dehydrogenase compare
Atu1141 -6.6 -9.0 Phosphoribosylglycinamide synthetase compare
Atu1308 -6.6 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -6.6 -7.8 orotidine 5 compare
Atu1850 -6.6 -6.1 phosphoribosylformylglycinamidine synthetase II compare
Atu2040 -6.5 -4.5 phosphoserine phosphatase compare
Atu3784 -6.3 -28.1 glutamate synthase large subunit compare
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu3783 -6.2 -19.6 glutamate synthase subunit beta compare
Atu0678 -6.2 -4.3 histidyl-tRNA synthetase compare
Atu0432 -6.2 -10.3 O-succinylhomoserine sulfhydrylase compare
Atu1688 -6.1 -5.9 indole-3-glycerol-phosphate synthase compare
Atu0017 -6.0 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0486 -6.0 -7.1 dihydroorotate dehydrogenase compare
Atu3885 -5.8 -9.7 inositol monophosphatase compare
Atu0537 -5.7 -6.8 histidinol dehydrogenase compare
Atu3754 -5.6 -7.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -5.5 -6.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1075 -5.5 -9.2 amidophosphoribosyltransferase compare
Atu3755 -5.5 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0184 -5.4 -3.8 glucokinase compare
Atu0185 -5.4 -6.6 methylglyoxal synthase compare
Atu0399 -5.4 -6.5 dihydroorotase compare
Atu0400 -5.3 -8.1 orotate phosphoribosyltransferase compare
Atu3482 -5.3 -10.5 pantoate--beta-alanine ligase compare
Atu2015 -5.3 -17.8 aminotransferase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu1845 -5.0 -6.2 phosphoribosylformylglycinamidine synthase I compare
Atu0039 -5.0 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3739 -4.9 -3.9 phosphoglycerate kinase compare
Atu3483 -4.8 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1686 -4.7 -22.0 peptidyl-prolyl cis-trans isomerse D compare
Atu0647 -4.6 -7.7 phosphoribosylamine--glycine ligase compare
Atu1589 -4.6 -11.1 aminotransferase, class I compare
Atu4075 -4.4 -10.6 glycogen synthase compare
Atu3731 -4.3 -11.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0043 -4.2 -4.1 imidazoleglycerol-phosphate dehydratase compare
Atu2548 -4.1 -19.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1456 -4.1 -15.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3469 -4.0 -3.8 phosphoglyceromutase compare
Atu2790 -3.9 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu1620 -3.9 -13.9 triosephosphate isomerase compare
Atu0598 -3.9 -13.3 phosphogluconate dehydratase compare
Atu0641 -3.7 -5.6 hypothetical protein compare
Atu0591 -3.3 -14.1 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu3289 -3.3 -5.2 thiamine-phosphate pyrophosphorylase compare
Atu0595 -3.2 -11.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0593 -3.2 -10.2 ABC transporter, membrane spanning protein compare
Atu1030 -3.1 -1.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0592 -3.1 -11.6 ABC transporter, membrane spanning protein compare
Atu1446 -3.1 -2.6 two component response regulator compare
Atu4098 -3.0 -10.9 quinolinate synthetase compare
Atu0040 -3.0 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0029 -2.9 -8.9 S-adenosylhomocysteine hydrolase compare
Atu6098 -2.9 -1.2 transcriptional regulator, HTH family compare
Atu1463 -2.9 -7.2 glycine cleavage system component H compare
Atu2155 -2.9 -18.6 methionine synthase compare
Atu1748 -2.8 -11.2 NIFU-like protein compare
Atu0723 -2.8 -2.7 FAD dependent oxidoreductase compare
Atu1464 -2.8 -9.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu1462 -2.8 -13.1 glycine cleavage system protein P2 compare
Atu0030 -2.8 -2.7 phosphocarrier protein HPr compare
Atu2569 -2.8 -18.0 thiamine biosynthesis protein compare
Atu4096 -2.8 -11.4 nicotinate-nucleotide pyrophosphorylase compare
Atu3290 -2.7 -12.8 phosphomethylpyrimidine kinase compare
Atu3997 -2.7 -17.5 biotin synthetase compare
Atu1454 -2.7 -9.3 siroheme synthase compare
Atu3288 -2.6 -8.1 hydroxyethylthiazole kinase compare
Atu4097 -2.6 -12.3 L-aspartate oxidase compare
Atu2205 -2.6 -6.1 transcriptional regulator, MarR family compare
Atu1359 -2.5 -1.9 dnaK deletion suppressor protein compare
Atu3999 -2.5 -4.3 dithiobiotin synthetase compare
Atu4000 -2.4 -16.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu6114 -2.3 -3.6 hypothetical protein compare
Atu0594 -2.2 -10.0 alpha-glucosidase conserved
Atu5540 -2.2 -1.2 hypothetical protein compare
Atu2127 -2.2 -9.5 L-carnitine dehydratase compare
Atu3998 -2.1 -11.0 8-amino-7-oxononanoate synthase compare
Atu1604 -2.1 -12.4 poly-beta-hydroxybutyrate synthase compare
Atu1685 -2.1 -1.8 hypothetical protein compare
Atu4001 -2.1 -11.1 3-oxoacyl-ACP synthase compare
Atu8115 -1.9 -3.9 Hypothetical Protein compare
Atu2209 -1.9 -4.9 pyrroline-5-carboxylate reductase compare
Atu1455 -1.8 -3.2 hypothetical protein compare
Atu0876 -1.8 -1.1 superoxide dismutase compare
Atu0188 -1.5 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu1572 -1.5 -6.3 hydrolase compare
Atu0031 -1.5 -1.9 PTS system, IIA component compare
Atu2020 -1.4 -3.8 transcriptional regulator, TetR family compare
Atu4173 -1.4 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu2554 -1.4 -2.7 lysyl-tRNA synthetase compare
Atu0346 -1.4 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1457 -1.4 -1.6 hypothetical protein compare
Atu4317 -1.3 -2.8 TetR family transcriptional regulator compare
Atu4618 -1.3 -7.9 dTDP-rhamnose-3,5-epimerase compare
Atu0566 -1.2 -1.8 hypothetical protein compare
Atu4072 -1.2 -2.1 nodulation protein N compare
Atu3486 -1.2 -2.9 DeoR family transcriptional regulator compare
Atu4166 -1.2 -2.7 UDP-glucose 4-epimerase compare
Atu0422 -1.2 -1.7 ABC transporter, membrane spanning protein compare
Atu0977 -1.2 -4.4 serine protease DO-like protease compare
Atu0332 -1.2 -7.0 RNA polymerase sigma-54 factor compare
Atu3730 -1.1 -1.3 hypothetical protein compare
Atu0354 -1.1 -2.2 ferric uptake regulator compare
Atu3908 -1.1 -7.7 GntR family transcriptional regulator compare
Atu4617 -1.1 -6.2 dTDP-D-glucose-4,6-dehydratase compare
Atu3287 -1.1 -3.2 thiamine biosynthesis associated protein compare
Atu4613 -1.1 -8.3 glycosyltransferase compare
Atu1439 -1.1 -2.5 hypothetical protein compare
Atu3496 -1.1 -3.6 hypothetical protein compare
Atu3183 -1.1 -1.2 hypothetical protein compare
Atu5470 -1.0 -2.0 hypothetical protein compare
Atu1891 -1.0 -3.7 cobalamin biosynthesis protein compare
Atu2804 -1.0 -6.3 cobaltochelatase subunit compare
Atu4773 -1.0 -1.9 two component response regulator compare
Atu4614 -1.0 -4.8 glycosyltransferase compare
Atu2808 -1.0 -5.9 cobyric acid synthase compare
Atu2801 -1.0 -4.1 precorrin-2 C20 methyltransferase compare
Atu1542 -1.0 -4.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3763 -1.0 -1.4 hypothetical protein compare
Atu1570 -0.9 -1.0 hypothetical protein compare
Atu0190 -0.9 -4.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1163 -0.9 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2798 -0.9 -2.7 precorrin-6y methyltransferase compare
Atu5517 -0.9 -1.8 hypothetical protein compare
Atu2809 -0.9 -4.9 cobalamin biosynthesis protein compare
Atu0795 -0.9 -2.1 hypothetical protein compare
Atu0769 -0.9 -1.1 protoheme IX farnesyltransferase compare
Atu2684 -0.9 -1.3 hypothetical protein compare
Atu0434 -0.9 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4616 -0.9 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu0141 -0.9 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu5142 -0.8 -1.3 hypothetical protein compare
Atu4615 -0.8 -5.1 glucose-1-phosphate thymidylyltransferase compare
Atu4711 -0.8 -3.5 two component sensor kinase compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu1339 -0.8 -2.3 ribonuclease E compare
Atu2555 -0.8 -2.8 L-lysine 2,3-aminomutase compare
Atu3121 -0.8 -1.1 cold shock protein compare
Atu2770 -0.8 -3.8 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2123 -0.8 -3.4 methylenetetrahydrofolate reductase compare
Atu8156 -0.8 -3.5 hypothetical protein compare
Atu0606 -0.8 -1.9 hypothetical protein compare
Atu0677 -0.8 -1.1 hypothetical protein compare
Atu0601 -0.8 -4.2 oxidoreductase compare
Atu0115 -0.8 -1.0 hypothetical protein compare
Atu2795 -0.8 -3.8 cobalamin biosynthetic protein compare
Atu0189 -0.8 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1774 -0.8 -4.1 ABC transporter, substrate binding protein (peptide) compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu2802 -0.7 -3.3 precorrin-8X methylmutase compare
Atu1546 -0.7 -2.3 transcriptional regulator, MerR family compare
Atu1677 -0.7 -2.8 queuine tRNA-ribosyltransferase compare
Atu0386 -0.7 -1.5 hypothetical protein compare
Atu3518 -0.7 -4.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2800 -0.7 -2.7 precorrin-3B C17-methyltransferase compare
Atu2472 -0.7 -1.5 hypothetical protein compare
Atu2805 -0.7 -3.4 cobalamin synthesis protein compare
Atu0291 -0.7 -3.9 hypothetical protein compare
Atu4108 -0.7 -4.7 ribonuclease D compare
Atu3075 -0.7 -4.4 TetR family transcriptional regulator compare
Atu0225 -0.7 -0.9 hypothetical protein compare
Atu2640 -0.7 -2.7 hypothetical protein compare
Atu2799 -0.7 -2.8 precorrin-6x reductase compare
Atu2484 -0.7 -1.2 hypothetical protein compare
Atu2433 -0.7 -1.0 hypothetical protein compare
Atu0300 -0.7 -2.6 methyltransferase compare
Atu1052 -0.7 -2.2 hypothetical protein compare
Atu2633 -0.6 -1.3 RhtB family transporter compare
Atu3345 -0.6 -1.5 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu2432 -0.6 -1.8 hypothetical protein compare
Atu1653 -0.6 -3.2 hypothetical protein compare
Atu4471 -0.6 -4.3 ABC transporter substrate-binding protein compare
Atu3485 -0.6 -4.2 short chain dehydrogenase compare
Atu0322 -0.6 -2.3 enoyl CoA hydratase compare
Atu0846 -0.6 -2.3 transcriptional regulator, MarR family compare
Atu1372 -0.6 -2.8 hypothetical protein compare
Atu0153 -0.6 -3.1 transcriptional regulator, Fur family compare
Atu3311 -0.6 -4.5 phosphomannose isomerase compare
Atu2807 -0.6 -3.0 cob(I)alamin adenosyltransferase compare
Atu0107 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Trehalose dihydrate in Agrobacterium fabrum C58

For carbon source D-Trehalose dihydrate across organisms