Experiment set2IT053 for Pseudomonas simiae WCS417

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
PS417_23805 -7.3 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -7.2 -4.9 3-isopropylmalate dehydratase compare
PS417_18600 -6.0 -3.9 isopropylmalate isomerase compare
PS417_27040 -5.6 -5.4 3-phosphoglycerate dehydrogenase compare
PS417_12855 -5.4 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01855 -5.3 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -5.3 -7.2 3-isopropylmalate dehydrogenase compare
PS417_01560 -5.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_18560 -5.2 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02005 -5.0 -9.8 glutamate synthase compare
PS417_02510 -4.8 -10.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27795 -4.6 -2.0 orotate phosphoribosyltransferase compare
PS417_23800 -4.6 -12.9 ketol-acid reductoisomerase compare
PS417_26740 -4.6 -11.8 homoserine acetyltransferase compare
PS417_01575 -4.6 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04420 -4.6 -12.7 histidinol dehydrogenase compare
PS417_06375 -4.5 -2.0 deoxycytidine triphosphate deaminase compare
PS417_02000 -4.5 -12.1 glutamate synthase compare
PS417_28220 -4.5 -4.2 LysR family transcriptional regulator compare
PS417_00185 -4.3 -5.9 tryptophan synthase subunit beta compare
PS417_24745 -4.3 -5.1 gamma-glutamyl phosphate reductase compare
PS417_16465 -4.2 -9.9 sirohydrochlorin ferrochelatase compare
PS417_27835 -4.2 -8.9 endoribonuclease compare
PS417_23810 -4.2 -11.9 acetolactate synthase 3 catalytic subunit compare
PS417_25720 -4.2 -7.3 anthranilate synthase component II compare
PS417_26890 -4.1 -9.2 dihydroxy-acid dehydratase compare
PS417_25725 -4.1 -14.8 anthranilate synthase component I compare
PS417_01565 -4.0 -8.1 imidazole glycerol phosphate synthase compare
PS417_20125 -4.0 -4.6 phosphoribosylglycinamide formyltransferase compare
PS417_12290 -3.9 -7.5 sulfite reductase compare
PS417_04415 -3.9 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23545 -3.8 -4.3 gamma-glutamyl kinase compare
PS417_27195 -3.7 -2.1 N-acetylglutamate synthase compare
PS417_22690 -3.7 -4.9 phosphogluconate dehydratase compare
PS417_26745 -3.6 -4.8 methionine biosynthesis protein MetW compare
PS417_23995 -3.5 -1.5 preprotein translocase subunit SecG compare
PS417_18530 -3.5 -4.1 O-succinylhomoserine sulfhydrylase compare
PS417_12555 -3.4 -12.7 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) conserved
PS417_01605 -3.3 -3.2 phosphoglycerate mutase compare
PS417_26995 -3.2 -11.2 phosphoserine phosphatase compare
PS417_05595 -3.2 -6.7 ornithine carbamoyltransferase compare
PS417_00180 -3.2 -4.3 tryptophan synthase subunit alpha compare
PS417_01850 -3.1 -10.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25710 -3.1 -2.7 indole-3-glycerol-phosphate synthase compare
PS417_26730 -3.0 -1.9 pyrroline-5-carboxylate reductase compare
PS417_23110 -2.9 -5.5 2-isopropylmalate synthase compare
PS417_02415 -2.8 -5.7 phosphoserine phosphatase compare
PS417_24155 -2.7 -4.4 ATP-binding protein compare
PS417_25715 -2.7 -6.2 anthranilate phosphoribosyltransferase compare
PS417_01570 -2.5 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20160 -2.5 -4.7 cysteine synthase compare
PS417_08125 -2.4 -1.8 prephenate dehydratase compare
PS417_08220 -2.3 -1.7 epimerase compare
PS417_20985 -2.3 -4.7 porin compare
PS417_06645 -2.1 -10.7 RNA polymerase-associated protein RapA compare
PS417_21705 -2.0 -6.8 arginine N-succinyltransferase compare
PS417_02555 -1.9 -13.0 exoribonuclease R compare
PS417_26540 -1.9 -10.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_26000 -1.8 -7.8 8-amino-7-oxononanoate synthase compare
PS417_25990 -1.8 -6.5 malonyl-CoA O-methyltransferase compare
PS417_08230 -1.7 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_03310 -1.7 -8.2 carbonate dehydratase compare
PS417_18690 -1.7 -5.1 aromatic amino acid aminotransferase compare
PS417_25985 -1.7 -2.8 dethiobiotin synthetase compare
PS417_23770 -1.6 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_26005 -1.5 -8.0 biotin synthase compare
PS417_21125 -1.5 -6.2 phosphoadenosine phosphosulfate reductase compare
PS417_27435 -1.5 -5.6 polyphosphate kinase compare
PS417_04380 -1.5 -2.0 ABC transporter permease compare
PS417_07170 -1.5 -2.6 hypothetical protein compare
PS417_21700 -1.4 -5.2 arginine N-succinyltransferase compare
PS417_13510 -1.4 -1.8 polyketide cyclase compare
PS417_08205 -1.3 -3.5 acetyltransferase compare
PS417_22620 -1.3 -4.4 pyruvate kinase compare
PS417_23375 -1.3 -2.3 cytochrome C oxidase compare
PS417_23900 -1.3 -8.2 poly(A) polymerase compare
PS417_21980 -1.3 -6.6 permease DsdX compare
PS417_12355 -1.2 -2.8 magnesium chelatase compare
PS417_14980 -1.2 -1.7 universal stress protein UspA compare
PS417_26985 -1.2 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08200 -1.2 -3.4 hypothetical protein compare
PS417_06200 -1.2 -4.7 protein-PII uridylyltransferase compare
PS417_07470 -1.2 -2.0 hypothetical protein compare
PS417_05445 -1.1 -1.6 DNA mismatch repair protein MutT compare
PS417_07165 -1.1 -3.1 dihydrodipicolinate synthase compare
PS417_24935 -1.1 -1.0 hypothetical protein compare
PS417_13990 -1.1 -1.8 LysR family transcriptional regulator compare
PS417_18590 -1.1 -1.6 SAM-dependent methyltransferase compare
PS417_05570 -1.1 -4.5 DeoR faimly transcriptional regulator compare
PS417_08580 -1.0 -5.3 histidine kinase compare
PS417_20610 -1.0 -1.7 hypothetical protein compare
PS417_20340 -1.0 -1.8 hypothetical protein compare
PS417_07595 -1.0 -3.7 PasA protein compare
PS417_20665 -1.0 -5.5 hypothetical protein compare
PS417_01950 -1.0 -4.4 malate dehydrogenase compare
PS417_08225 -1.0 -3.4 acetolactate synthase compare
PS417_12220 -1.0 -3.6 hydroxyacylglutathione hydrolase compare
PS417_04050 -1.0 -2.4 peptide ABC transporter ATP-binding protein compare
PS417_21690 -1.0 -4.7 N-succinylarginine dihydrolase compare
PS417_23315 -1.0 -1.1 transcriptional regulator compare
PS417_22695 -1.0 -5.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04185 -1.0 -2.2 hypothetical protein compare
PS417_03260 -1.0 -2.4 5S ribosomal RNA compare
PS417_26695 -1.0 -1.0 uracil phosphoribosyltransferase compare
PS417_28230 -0.9 -1.9 transcriptional regulator compare
PS417_12870 -0.9 -1.4 enoyl-CoA hydratase compare
PS417_11705 -0.9 -4.3 cyclic peptide transporter compare
PS417_23950 -0.9 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_21655 -0.9 -1.5 aspartate kinase compare
PS417_19065 -0.9 -1.2 monooxygenase compare
PS417_13800 -0.9 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26990 -0.9 -1.2 RNA pyrophosphohydrolase compare
PS417_06680 -0.9 -6.2 nuclease PIN compare
PS417_18435 -0.9 -1.6 hypothetical protein compare
PS417_09235 -0.8 -1.0 molecular chaperone compare
PS417_05065 -0.8 -1.7 hypothetical protein compare
PS417_24835 -0.8 -3.7 hypothetical protein compare
PS417_28070 -0.8 -3.7 phosphate ABC transporter ATP-binding protein compare
PS417_15885 -0.8 -1.5 GCN5 family acetyltransferase compare
PS417_17855 -0.8 -2.4 major facilitator transporter compare
PS417_10010 -0.8 -2.9 Replication protein P compare
PS417_10675 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_24125 -0.8 -3.4 hypothetical protein compare
PS417_19335 -0.8 -2.4 isochorismatase compare
PS417_22570 -0.8 -1.0 H-NS histone compare
PS417_20030 -0.8 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_01580 -0.8 -0.4 imidazole glycerol phosphate synthase compare
PS417_18755 -0.8 -1.7 CrtK compare
PS417_09915 -0.8 -1.5 hypothetical protein compare
PS417_21480 -0.8 -1.2 23S rRNA pseudouridylate synthase compare
PS417_11770 -0.8 -1.9 pyruvate dehydrogenase compare
PS417_18455 -0.8 -1.4 hypothetical protein compare
PS417_00295 -0.8 -4.5 hypothetical protein compare
PS417_01195 -0.8 -1.5 RNA-binding protein S4 compare
PS417_27010 -0.8 -5.4 threonine dehydratase compare
PS417_19600 -0.7 -1.3 exonuclease compare
PS417_08245 -0.7 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19190 -0.7 -2.5 BolA family transcriptional regulator compare
PS417_08540 -0.7 -2.4 RNA helicase compare
PS417_14515 -0.7 -1.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_27870 -0.7 -2.5 ATP-dependent DNA helicase RecG compare
PS417_02280 -0.7 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_28325 -0.7 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_28080 -0.7 -4.6 phosphate ABC transporter permease compare
PS417_19800 -0.7 -1.7 flagellar motor switch protein FliG compare
PS417_05455 -0.7 -3.1 XRE family transcriptional regulator compare
PS417_04270 -0.7 -3.8 ribonuclease G compare
PS417_25270 -0.7 -2.1 NrdR family transcriptional regulator compare
PS417_03100 -0.7 -0.8 pilus assembly protein compare
PS417_16095 -0.7 -3.0 amidohydrolase compare
PS417_22520 -0.6 -1.6 histidine kinase compare
PS417_06685 -0.6 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_24575 -0.6 -1.0 hypothetical protein compare
PS417_08250 -0.6 -1.4 competence protein ComEA compare
PS417_21870 -0.6 -1.3 glycerophosphodiester phosphodiesterase compare
PS417_19805 -0.6 -1.3 flagellar M-ring protein FliF compare
PS417_27035 -0.6 -3.4 FAD-linked oxidase compare
PS417_11615 -0.6 -1.3 urea ABC transporter ATP-binding protein compare
PS417_16005 -0.6 -2.2 ATPase compare
PS417_10480 -0.6 -1.5 glutathione S-transferase compare
PS417_00945 -0.6 -1.7 sulfate ABC transporter ATP-binding protein compare
PS417_19610 -0.6 -1.9 molybdenum cofactor sulfurase compare
PS417_08195 -0.6 -3.3 hypothetical protein compare
PS417_17685 -0.6 -2.2 allantoate amidohydrolase compare
PS417_26770 -0.6 -1.8 tRNA (guanine-N7)-methyltransferase compare
PS417_09210 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_11480 -0.6 -1.7 hypothetical protein compare
PS417_07305 -0.6 -1.4 3-beta hydroxysteroid dehydrogenase compare
PS417_11845 -0.6 -2.3 RpiR family transcriptional regulator compare
PS417_02060 -0.6 -3.2 FAD-dependent oxidoreductase compare
PS417_01620 -0.6 -1.9 preprotein translocase subunit SecB compare
PS417_12565 -0.6 -1.5 2-dehydro-3-deoxygluconokinase compare
PS417_26220 -0.6 -1.8 Rieske (2Fe-2S) protein compare
PS417_06635 -0.6 -1.0 ferredoxin compare
PS417_18250 -0.6 -1.3 chemotaxis protein compare
PS417_12635 -0.6 -1.4 alkanesulfonate monooxygenase compare
PS417_14835 -0.6 -2.6 amidase compare
PS417_27300 -0.6 -0.8 cell division protein ZapA compare
PS417_05815 -0.6 -2.6 recombinase RecA compare
PS417_19425 -0.6 -0.8 allantoicase compare
PS417_02035 -0.6 -1.4 3-ketoacyl-ACP reductase compare
PS417_13575 -0.6 -1.5 succinylglutamate desuccinylase compare
PS417_20645 -0.6 -4.3 membrane protein compare
PS417_00375 -0.6 -2.4 membrane protein compare
PS417_01915 -0.6 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05695 -0.6 -2.2 transcriptional regulator compare
PS417_01735 -0.6 -2.3 ABC transporter permease compare
PS417_26365 -0.5 -1.0 EmrB/QacA subfamily drug resistance transporter compare
PS417_26175 -0.5 -0.7 sarcosine oxidase subunit gamma compare
PS417_00175 -0.5 -0.8 CigR compare
PS417_15085 -0.5 -2.5 ATPase AAA compare
PS417_03915 -0.5 -1.3 tRNA-Thr compare
PS417_01095 -0.5 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_14890 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_11925 -0.5 -1.3 hypothetical protein compare
PS417_07420 -0.5 -1.6 restriction endonuclease compare
PS417_20670 -0.5 -2.7 glycosyl transferase family 2 compare
PS417_13620 -0.5 -1.0 thermostable hemolysin compare
PS417_18310 -0.5 -1.5 hypothetical protein compare
PS417_13165 -0.5 -1.2 peroxidase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas simiae WCS417

For carbon source D-Gluconic Acid sodium salt across organisms