Experiment set2IT052 for Pseudomonas simiae WCS417

Compare to:

a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.3 -5.0 isopropylmalate isomerase compare
PS417_25720 -7.2 -7.1 anthranilate synthase component II compare
PS417_01575 -6.9 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -6.3 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.2 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -6.0 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23805 -5.7 -5.6 acetolactate synthase 3 regulatory subunit compare
PS417_02005 -5.7 -11.5 glutamate synthase compare
PS417_18585 -5.4 -6.4 3-isopropylmalate dehydrogenase compare
PS417_16465 -5.3 -10.1 sirohydrochlorin ferrochelatase compare
PS417_18560 -5.3 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -5.2 -16.9 anthranilate synthase component I compare
PS417_26740 -5.2 -10.2 homoserine acetyltransferase compare
PS417_23800 -5.2 -11.1 ketol-acid reductoisomerase compare
PS417_01850 -4.9 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -4.8 -4.6 tryptophan synthase subunit beta compare
PS417_02510 -4.7 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01565 -4.6 -4.9 imidazole glycerol phosphate synthase compare
PS417_04420 -4.5 -11.8 histidinol dehydrogenase compare
PS417_23810 -4.5 -13.3 acetolactate synthase 3 catalytic subunit compare
PS417_27795 -4.5 -2.1 orotate phosphoribosyltransferase compare
PS417_24745 -4.5 -6.1 gamma-glutamyl phosphate reductase compare
PS417_02000 -4.4 -11.8 glutamate synthase compare
PS417_06375 -4.4 -2.1 deoxycytidine triphosphate deaminase compare
PS417_27835 -4.4 -8.2 endoribonuclease compare
PS417_08125 -4.2 -1.9 prephenate dehydratase compare
PS417_23545 -4.0 -3.3 gamma-glutamyl kinase compare
PS417_20160 -3.8 -3.5 cysteine synthase compare
PS417_12290 -3.8 -8.2 sulfite reductase compare
PS417_05595 -3.8 -7.6 ornithine carbamoyltransferase compare
PS417_25710 -3.7 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_00180 -3.7 -3.5 tryptophan synthase subunit alpha compare
PS417_26995 -3.6 -9.2 phosphoserine phosphatase compare
PS417_18530 -3.6 -5.7 O-succinylhomoserine sulfhydrylase compare
PS417_27195 -3.6 -2.2 N-acetylglutamate synthase compare
PS417_26890 -3.5 -8.5 dihydroxy-acid dehydratase compare
PS417_07640 -3.5 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20125 -3.5 -6.1 phosphoribosylglycinamide formyltransferase compare
PS417_18595 -3.4 -5.2 3-isopropylmalate dehydratase compare
PS417_23995 -3.4 -1.6 preprotein translocase subunit SecG compare
PS417_26745 -3.3 -3.8 methionine biosynthesis protein MetW compare
PS417_01580 -3.3 -1.8 imidazole glycerol phosphate synthase compare
PS417_25715 -3.2 -5.6 anthranilate phosphoribosyltransferase compare
PS417_02415 -3.1 -5.6 phosphoserine phosphatase compare
PS417_12855 -3.1 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01605 -3.1 -2.9 phosphoglycerate mutase compare
PS417_23110 -3.0 -7.4 2-isopropylmalate synthase compare
PS417_26730 -2.9 -1.9 pyrroline-5-carboxylate reductase compare
PS417_01950 -2.8 -7.8 malate dehydrogenase compare
PS417_20985 -2.8 -4.5 porin compare
PS417_04365 -2.7 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08245 -2.7 -2.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01570 -2.6 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_24155 -2.5 -3.7 ATP-binding protein compare
PS417_23770 -2.2 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_18690 -2.2 -5.6 aromatic amino acid aminotransferase compare
PS417_01210 -2.1 -9.3 hypothetical protein compare
PS417_01560 -1.8 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_21705 -1.7 -4.8 arginine N-succinyltransferase compare
PS417_22645 -1.7 -9.0 C4-dicarboxylate ABC transporter conserved
PS417_13510 -1.5 -1.9 polyketide cyclase compare
PS417_21700 -1.4 -4.2 arginine N-succinyltransferase compare
PS417_22650 -1.4 -8.8 MFS transporter conserved
PS417_22640 -1.4 -3.0 cytochrome C biogenesis protein CcmE conserved
PS417_08230 -1.4 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26990 -1.3 -1.8 RNA pyrophosphohydrolase compare
PS417_22520 -1.3 -2.6 histidine kinase compare
PS417_08580 -1.3 -6.2 histidine kinase compare
PS417_07170 -1.3 -3.0 hypothetical protein compare
PS417_27010 -1.2 -7.4 threonine dehydratase compare
PS417_18590 -1.2 -2.3 SAM-dependent methyltransferase compare
PS417_22445 -1.2 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_21020 -1.2 -8.9 phosphoenolpyruvate synthase compare
PS417_24935 -1.2 -1.1 hypothetical protein compare
PS417_01145 -1.2 -1.3 taurine transporter ATP-binding subunit compare
PS417_08200 -1.2 -3.3 hypothetical protein compare
PS417_24835 -1.2 -4.5 hypothetical protein compare
PS417_08225 -1.1 -4.6 acetolactate synthase compare
PS417_13305 -1.1 -1.9 hypothetical protein compare
PS417_21125 -1.1 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_23775 -1.1 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_12355 -1.1 -2.7 magnesium chelatase compare
PS417_01995 -1.1 -1.7 hypothetical protein compare
PS417_26695 -1.1 -1.0 uracil phosphoribosyltransferase compare
PS417_20665 -1.0 -5.0 hypothetical protein compare
PS417_05570 -1.0 -2.1 DeoR faimly transcriptional regulator compare
PS417_01620 -1.0 -2.4 preprotein translocase subunit SecB compare
PS417_13445 -1.0 -1.9 D-aminopeptidase compare
PS417_08195 -1.0 -5.5 hypothetical protein compare
PS417_20610 -1.0 -1.4 hypothetical protein compare
PS417_23315 -1.0 -1.4 transcriptional regulator compare
PS417_16715 -1.0 -1.6 DoxX family protein compare
PS417_01915 -1.0 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21655 -1.0 -1.5 aspartate kinase compare
PS417_21630 -0.9 -2.3 magnesium transporter compare
PS417_09010 -0.9 -1.8 phosphohistidine phosphatase compare
PS417_04375 -0.9 -2.7 ABC transporter ATP-binding protein compare
PS417_00570 -0.9 -4.0 NADP transhydrogenase subunit alpha compare
PS417_17855 -0.9 -3.0 major facilitator transporter compare
PS417_27435 -0.9 -4.1 polyphosphate kinase compare
PS417_06195 -0.9 -5.3 succinyldiaminopimelate aminotransferase compare
PS417_27815 -0.9 -1.3 hypothetical protein compare
PS417_07165 -0.9 -4.7 dihydrodipicolinate synthase compare
PS417_04425 -0.9 -4.2 histidinol-phosphate aminotransferase compare
PS417_00190 -0.9 -3.0 LysR family transcriptional regulator compare
PS417_21690 -0.9 -3.5 N-succinylarginine dihydrolase compare
PS417_04270 -0.9 -5.8 ribonuclease G compare
PS417_23330 -0.9 -3.1 hypothetical protein compare
PS417_22570 -0.9 -1.0 H-NS histone compare
PS417_02980 -0.9 -1.5 chemotaxis protein compare
PS417_04585 -0.9 -1.1 hypothetical protein compare
PS417_10010 -0.8 -2.2 Replication protein P compare
PS417_14515 -0.8 -1.8 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_26645 -0.8 -2.1 chemotaxis protein compare
PS417_20620 -0.8 -2.7 glycosyl transferase family 2 compare
PS417_04185 -0.8 -1.7 hypothetical protein compare
PS417_05455 -0.8 -3.8 XRE family transcriptional regulator compare
PS417_11475 -0.8 -2.4 membrane protein compare
PS417_26725 -0.8 -2.2 hypothetical protein compare
PS417_04410 -0.8 -1.1 hypothetical protein compare
PS417_01635 -0.8 -4.3 nitrogen regulation protein NR(I) compare
PS417_23900 -0.8 -4.6 poly(A) polymerase compare
PS417_00565 -0.8 -3.2 NAD(P) transhydrogenase compare
PS417_19790 -0.8 -1.4 ATP synthase compare
PS417_13800 -0.8 -1.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22115 -0.8 -2.3 transcriptional regulator compare
PS417_19955 -0.7 -1.3 hypothetical protein compare
PS417_23950 -0.7 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_14200 -0.7 -2.2 hypothetical protein compare
PS417_00560 -0.7 -5.4 NAD synthetase compare
PS417_02555 -0.7 -5.9 exoribonuclease R compare
PS417_09695 -0.7 -1.2 hydrolase compare
PS417_26365 -0.7 -1.5 EmrB/QacA subfamily drug resistance transporter compare
PS417_02765 -0.7 -1.4 phosphate starvation-inducible protein PsiF compare
PS417_10040 -0.7 -0.7 MFS transporter compare
PS417_08170 -0.7 -4.9 capsular biosynthesis protein compare
PS417_08205 -0.7 -2.1 acetyltransferase compare
PS417_08365 -0.7 -0.8 hypothetical protein compare
PS417_02720 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_15305 -0.7 -1.4 type VI secretion protein compare
PS417_20030 -0.7 -1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_26605 -0.7 -0.9 malonate decarboxylase subunit beta compare
PS417_09915 -0.7 -1.1 hypothetical protein compare
PS417_05695 -0.7 -2.8 transcriptional regulator compare
PS417_28075 -0.7 -3.6 phosphate ABC transporter permease compare
PS417_09150 -0.7 -1.7 energy transducer TonB compare
PS417_05975 -0.7 -0.6 chemotaxis protein CheW compare
PS417_13990 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_06600 -0.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_11925 -0.7 -1.6 hypothetical protein compare
PS417_02915 -0.7 -2.3 precorrin-3B C17-methyltransferase compare
PS417_28080 -0.6 -5.0 phosphate ABC transporter permease compare
PS417_27875 -0.6 -3.1 histidine kinase compare
PS417_21090 -0.6 -2.2 hypothetical protein compare
PS417_04860 -0.6 -3.9 ATPase compare
PS417_10740 -0.6 -2.7 hypothetical protein compare
PS417_14940 -0.6 -1.5 LysR family transcriptional regulator compare
PS417_19075 -0.6 -4.2 ABC transporter ATP-binding protein compare
PS417_02770 -0.6 -2.2 membrane protein compare
PS417_20520 -0.6 -1.8 3-phosphoglycerate kinase compare
PS417_19240 -0.6 -2.0 peptidase M42 compare
PS417_19630 -0.6 -1.8 LuxR family transcriptional regulator compare
PS417_19805 -0.6 -1.1 flagellar M-ring protein FliF compare
PS417_07175 -0.6 -2.1 beta-lactamase compare
PS417_15725 -0.6 -3.2 nitrate/nitrite transporter NarK compare
PS417_00485 -0.6 -1.9 ABC transporter permease compare
PS417_01095 -0.6 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_17000 -0.6 -1.8 MerR family transcriptional regulator compare
PS417_11530 -0.6 -2.9 amidase compare
PS417_05560 -0.6 -1.8 ABC transporter compare
PS417_08540 -0.6 -2.0 RNA helicase compare
PS417_26120 -0.6 -1.6 hypothetical protein compare
PS417_00295 -0.6 -2.9 hypothetical protein compare
PS417_19065 -0.6 -0.9 monooxygenase compare
PS417_22305 -0.6 -2.7 histidine kinase compare
PS417_09930 -0.6 -1.2 hypothetical protein compare
PS417_15660 -0.6 -1.6 hemerythrin compare
PS417_27305 -0.6 -3.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_18755 -0.6 -1.5 CrtK compare
PS417_17510 -0.6 -3.6 histidine kinase compare
PS417_05820 -0.6 -1.8 recombinase RecX compare
PS417_10320 -0.6 -1.8 hypothetical protein compare
PS417_09470 -0.6 -0.7 hypothetical protein compare
PS417_15235 -0.6 -1.8 short-chain dehydrogenase compare
PS417_06280 -0.6 -1.7 ribonuclease HII compare
PS417_16045 -0.6 -1.3 acyl-CoA dehydrogenase compare
PS417_15455 -0.6 -2.6 ABC transporter substrate-binding protein compare
PS417_27595 -0.6 -1.5 recombinase XerC compare
PS417_15750 -0.6 -1.0 protease compare
PS417_21595 -0.6 -2.5 flagellar biosynthesis protein FlgN compare
PS417_06395 -0.6 -1.0 amino acid transporter compare
PS417_08860 -0.6 -2.2 small component of pyruvate transporter (yjcH-like) (from data) compare
PS417_02895 -0.5 -1.0 precorrin-6Y C5,15-methyltransferase compare
PS417_23615 -0.5 -1.4 sulfate transporter compare
PS417_27870 -0.5 -1.9 ATP-dependent DNA helicase RecG compare
PS417_08155 -0.5 -1.3 integration host factor subunit beta compare
PS417_11705 -0.5 -3.4 cyclic peptide transporter compare
PS417_00345 -0.5 -1.5 copper-binding protein compare
PS417_03260 -0.5 -1.4 5S ribosomal RNA compare
PS417_17515 -0.5 -2.5 GfdT protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Pseudomonas simiae WCS417

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms