Experiment set2IT052 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with benzoic acid 0.4 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3998 +1.1 2.0 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Echvi_3960 +1.1 2.4 Histone H1-like protein Hc1. compare
Echvi_1638 +1.0 2.5 hypothetical protein compare
Echvi_0650 +1.0 2.1 thioredoxin compare
Echvi_1020 +1.0 1.6 hypothetical protein compare
Echvi_3853 +1.0 0.8 Predicted transcriptional regulators compare
Echvi_2402 +0.9 2.6 hypothetical protein compare
Echvi_0436 +0.9 2.4 Bacterial mobilisation protein (MobC). compare
Echvi_3241 +0.9 2.1 hypothetical protein compare
Echvi_3262 +0.9 2.4 hypothetical protein compare
Echvi_1999 +0.9 2.0 hypothetical protein compare
Echvi_2428 +0.9 1.5 iojap-like ribosome-associated protein compare
Echvi_0128 +0.8 1.6 hypothetical protein compare
Echvi_2586 +0.8 1.2 hypothetical protein compare
Echvi_2679 +0.8 1.5 hypothetical protein compare
Echvi_0431 +0.7 2.5 hypothetical protein compare
Echvi_4562 +0.7 2.6 hypothetical protein compare
Echvi_3292 +0.7 1.1 hypothetical protein compare
Echvi_2709 +0.7 2.6 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_1280 +0.7 2.0 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_3347 +0.7 0.9 hypothetical protein compare
Echvi_1850 +0.7 4.3 Bacterial SH3 domain. compare
Echvi_4025 +0.7 1.3 hypothetical protein compare
Echvi_0089 +0.7 1.9 methylmalonyl-CoA epimerase compare
Echvi_0346 +0.7 2.5 Predicted acyltransferase compare
Echvi_1547 +0.7 2.1 hypothetical protein compare
Echvi_0852 +0.6 5.8 Parvulin-like peptidyl-prolyl isomerase compare
Echvi_2157 +0.6 1.4 hypothetical protein compare
Echvi_3824 +0.6 1.3 hypothetical protein compare
Echvi_0796 +0.6 1.7 hypothetical protein compare
Echvi_2298 +0.6 0.9 hypothetical protein compare
Echvi_0724 +0.6 1.5 hypothetical protein compare
Echvi_1491 +0.6 1.6 export-related chaperone CsaA compare
Echvi_4369 +0.6 0.9 hypothetical protein compare
Echvi_1648 +0.6 1.3 hypothetical protein compare
Echvi_3914 +0.6 5.1 Transcriptional regulators compare
Echvi_0211 +0.6 2.3 hypothetical protein compare
Echvi_4327 +0.6 2.2 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_1900 +0.5 2.1 nitrite reductase [NAD(P)H], small subunit compare
Echvi_1283 +0.5 1.5 Predicted periplasmic lipoprotein (DUF2291). compare
Echvi_0761 +0.5 1.0 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family compare
Echvi_1662 +0.5 0.8 hypothetical protein compare
Echvi_2504 +0.5 1.3 Anthranilate/para-aminobenzoate synthases component I compare
Echvi_0582 +0.5 1.7 hypothetical protein compare
Echvi_4545 +0.5 2.4 hypothetical protein compare
Echvi_2829 +0.5 4.9 hypothetical protein compare
Echvi_2229 +0.5 2.9 Lysophospholipase L1 and related esterases compare
Echvi_4631 +0.5 3.4 (p)ppGpp synthetase, RelA/SpoT family compare
Echvi_1991 +0.5 2.3 Predicted methylated DNA-protein cysteine methyltransferase compare
Echvi_3200 +0.5 2.5 Site-specific recombinase XerD compare
Echvi_1406 +0.5 0.9 hypothetical protein compare
Echvi_0813 +0.5 1.3 hypothetical protein compare
Echvi_3674 +0.5 2.0 Putative transposase. compare
Echvi_0667 +0.5 2.5 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Echvi_0674 +0.5 4.1 hypothetical protein compare
Echvi_0169 +0.5 4.2 hypothetical protein compare
Echvi_0114 +0.5 1.7 N-acetylmuramoyl-L-alanine amidase compare
Echvi_4055 +0.5 1.2 Uncharacterized protein involved in copper resistance compare
Echvi_4342 +0.5 4.4 transporter, SSS family compare
Echvi_0599 +0.5 1.5 hypothetical protein compare
Echvi_1611 +0.5 2.3 hypothetical protein compare
Echvi_2222 +0.5 2.0 hypothetical protein compare
Echvi_2198 +0.5 0.6 hypothetical protein compare
Echvi_3648 +0.5 1.8 hypothetical protein compare
Echvi_3229 +0.5 1.9 hypothetical protein compare
Echvi_3872 +0.5 0.6 SnoaL-like polyketide cyclase. compare
Echvi_0300 +0.5 3.2 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_0299 +0.5 3.9 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_0134 +0.5 2.1 hypothetical protein compare
Echvi_3057 +0.5 1.0 citrate synthase I (hexameric type) compare
Echvi_4278 +0.5 2.1 hypothetical protein compare
Echvi_2793 +0.5 4.3 hypothetical protein compare
Echvi_0660 +0.5 1.9 Uncharacterized conserved protein compare
Echvi_2893 +0.5 2.7 hypothetical protein compare
Echvi_4269 +0.5 1.9 Uncharacterized protein conserved in bacteria compare
Echvi_2244 +0.5 1.0 hypothetical protein compare
Echvi_0538 +0.5 2.4 hypothetical protein compare
Echvi_0298 +0.5 4.0 gliding-associated putative ABC transporter substrate-binding component GldG compare
Echvi_0733 +0.4 3.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_0551 +0.4 1.9 hypothetical protein compare
Echvi_1319 +0.4 4.0 gliding motility-associated lipoprotein GldB compare
Echvi_2715 +0.4 2.3 hypothetical protein compare
Echvi_3676 +0.4 1.7 hypothetical protein compare
Echvi_0621 +0.4 4.1 gliding motility-associated protein GldM compare
Echvi_4357 +0.4 1.2 Protein of unknown function (DUF3714). compare
Echvi_3983 +0.4 2.5 Transcriptional regulator/sugar kinase compare
Echvi_2824 +0.4 3.6 hypothetical protein compare
Echvi_3894 +0.4 2.6 Transcriptional regulator/sugar kinase compare
Echvi_0897 +0.4 1.4 hypothetical protein compare
Echvi_1385 +0.4 1.3 Bacterial mobilisation protein (MobC). compare
Echvi_0343 +0.4 2.2 Enoyl-CoA hydratase/carnithine racemase compare
Echvi_4415 +0.4 1.8 Transcription antiterminator compare
Echvi_3379 +0.4 3.6 hypothetical protein compare
Echvi_0655 +0.4 3.3 hypothetical protein compare
Echvi_0623 +0.4 3.9 gliding motility-associated lipoprotein GldK compare
Echvi_2297 +0.4 0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Echvi_2423 +0.4 2.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Echvi_3703 +0.4 1.3 hypothetical protein compare
Echvi_0659 +0.4 1.8 Uncharacterized membrane protein, required for colicin V production compare
Echvi_3835 +0.4 1.3 hypothetical protein compare
Echvi_1930 +0.4 1.0 DNA repair proteins compare
Echvi_0106 +0.4 1.7 hypothetical protein compare
Echvi_3910 +0.4 2.6 Transcriptional regulator/sugar kinase compare
Echvi_3745 +0.4 2.0 hypothetical protein compare
Echvi_2253 +0.4 2.4 hypothetical protein compare
Echvi_3958 +0.4 1.6 hypothetical protein compare
Echvi_1502 +0.4 1.7 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) compare
Echvi_0199 +0.4 3.2 hypothetical protein compare
Echvi_2330 +0.4 1.1 hypothetical protein compare
Echvi_2134 +0.4 1.4 hypothetical protein compare
Echvi_4581 +0.4 2.3 hypothetical protein compare
Echvi_0293 +0.4 0.9 hypothetical protein compare
Echvi_3716 +0.4 1.0 rRNA methylases compare
Echvi_2611 +0.4 2.5 hypothetical protein compare
Echvi_3704 +0.4 2.0 hypothetical protein compare
Echvi_1548 +0.4 2.0 hypothetical protein compare
Echvi_0333 +0.4 3.5 Bacteroidetes-specific putative membrane protein compare
Echvi_0723 +0.4 1.1 hypothetical protein compare
Echvi_4083 +0.4 3.9 hypothetical protein compare
Echvi_0617 +0.4 3.6 hypothetical protein compare
Echvi_4644 +0.4 1.4 S23 ribosomal protein. compare
Echvi_0334 +0.4 3.7 hypothetical protein compare
Echvi_2254 +0.4 1.6 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Echvi_0870 +0.4 2.1 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase compare
Echvi_0889 +0.4 2.3 Uncharacterized iron-regulated protein compare
Echvi_2503 +0.4 0.8 hypothetical protein compare
Echvi_2527 +0.4 1.4 Protein of unknown function (DUF3276). compare
Echvi_0186 +0.4 0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
Echvi_2959 +0.4 0.8 hypothetical protein compare
Echvi_3517 +0.4 2.2 hypothetical protein compare
Echvi_4208 +0.4 2.7 Signal transduction histidine kinase compare
Echvi_0081 +0.4 1.6 hydrolase, TatD family compare
Echvi_0878 +0.4 1.7 cytochrome c nitrate reductase, small subunit compare
Echvi_4594 +0.4 2.5 Xaa-Pro aminopeptidase compare
Echvi_3036 +0.4 2.0 Response regulator of the LytR/AlgR family compare
Echvi_1270 +0.4 1.6 DNA polymerase III, alpha subunit (gram-positive type) compare
Echvi_0973 +0.4 1.2 hypothetical protein compare
Echvi_4049 +0.4 2.0 Uncharacterized protein conserved in bacteria compare
Echvi_4319 +0.4 2.0 hypothetical protein compare
Echvi_4140 +0.4 2.0 Copper chaperone compare
Echvi_3333 +0.4 0.9 hypothetical protein compare
Echvi_3871 +0.4 1.0 hypothetical protein compare
Echvi_1224 +0.4 3.0 gliding motility-associated lipoprotein GldD compare
Echvi_1888 +0.4 3.1 hypothetical protein compare
Echvi_4210 +0.4 2.8 RND family efflux transporter, MFP subunit compare
Echvi_0938 +0.4 1.3 Protein of unknown function (DUF1572). compare
Echvi_3576 +0.4 3.3 Subtilisin-like serine proteases compare
Echvi_4052 +0.4 2.2 Uncharacterized conserved protein compare
Echvi_3483 +0.4 1.9 tRNA (guanine-N(7)-)-methyltransferase compare
Echvi_3106 +0.4 1.9 Sugar phosphate permease compare
Echvi_3890 +0.4 1.1 hypothetical protein compare
Echvi_2108 +0.4 0.6 Predicted small integral membrane protein compare
Echvi_1585 +0.4 1.7 Uncharacterized conserved protein compare
Echvi_4177 +0.4 1.7 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Echvi_3805 +0.3 1.0 Sugar transferases involved in lipopolysaccharide synthesis compare
Echvi_4074 +0.3 2.6 Tetratricopeptide repeat. compare
Echvi_3103 +0.3 2.4 Transcriptional regulators compare
Echvi_1873 +0.3 2.2 hypothetical protein compare
Echvi_1171 +0.3 1.2 Uncharacterized conserved protein compare
Echvi_2812 +0.3 1.7 hypothetical protein compare
Echvi_1227 +0.3 0.3 hypothetical protein compare
Echvi_2538 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
Echvi_4138 +0.3 1.9 hypothetical protein compare
Echvi_2619 +0.3 1.5 Transcriptional regulator compare
Echvi_3381 +0.3 3.1 Pregnancy-associated plasma protein-A. compare
Echvi_1363 +0.3 1.2 hypothetical protein compare
Echvi_1419 +0.3 1.5 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_3046 +0.3 1.2 hypothetical protein compare
Echvi_1606 +0.3 1.7 hypothetical protein compare
Echvi_0705 +0.3 2.0 hypothetical protein compare
Echvi_0624 +0.3 2.8 Bacteroidetes-specific putative membrane protein compare
Echvi_0511 +0.3 1.6 Superfamily II DNA and RNA helicases compare
Echvi_3995 +0.3 0.7 hypothetical protein compare
Echvi_1605 +0.3 2.1 Mg-chelatase subunit ChlI compare
Echvi_1939 +0.3 1.3 Bacteroides conjugative transposon TraN protein compare
Echvi_4459 +0.3 1.3 Protein of unknown function (DUF3703). compare
Echvi_3691 +0.3 1.9 intracellular protease, PfpI family compare
Echvi_0550 +0.3 2.9 hypothetical protein compare
Echvi_1285 +0.3 1.4 Transketolase, C-terminal subunit compare
Echvi_1754 +0.3 1.7 Co-chaperonin GroES (HSP10) compare
Echvi_3015 +0.3 2.2 hypothetical protein compare
Echvi_1916 +0.3 0.9 hypothetical protein compare
Echvi_1311 +0.3 2.8 gliding motility-associated lipoprotein GldJ compare
Echvi_0842 +0.3 2.2 Membrane proteins related to metalloendopeptidases compare
Echvi_0157 +0.3 1.3 hexose kinase, 1-phosphofructokinase family compare
Echvi_3370 +0.3 1.0 Predicted membrane protein compare
Echvi_3527 +0.3 1.6 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0546 +0.3 1.9 hypothetical protein compare
Echvi_0620 +0.3 2.6 gliding motility associated protien GldN compare
Echvi_0345 +0.3 1.6 hypothetical protein compare
Echvi_0543 +0.3 1.6 hypothetical protein compare
Echvi_1365 +0.3 0.5 hypothetical protein compare
Echvi_0795 +0.3 1.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_0678 +0.3 1.2 hypothetical protein compare
Echvi_0622 +0.3 1.7 gliding motility-associated protein GldL compare
Echvi_4411 +0.3 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_4416 +0.3 0.9 hypothetical protein compare
Echvi_3233 +0.3 1.6 hypothetical protein compare
Echvi_2377 +0.3 0.7 hypothetical protein compare
Echvi_4549 +0.3 0.8 Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare


Specific Phenotypes

None in this experiment

For Echinicola vietnamensis KMM 6221, DSM 17526 in stress experiments

For stress benzoic acid across organisms