Experiment set2IT051 for Pseudomonas simiae WCS417

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.6 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_18600 -6.1 -5.7 isopropylmalate isomerase compare
PS417_01575 -5.6 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25725 -5.5 -18.7 anthranilate synthase component I compare
PS417_25720 -5.5 -7.6 anthranilate synthase component II compare
PS417_02510 -5.5 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -5.4 -7.4 3-isopropylmalate dehydrogenase compare
PS417_18560 -5.4 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -5.4 -10.9 ketol-acid reductoisomerase compare
PS417_23805 -5.3 -7.3 acetolactate synthase 3 regulatory subunit compare
PS417_24745 -5.3 -5.2 gamma-glutamyl phosphate reductase compare
PS417_04415 -5.2 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00185 -4.9 -5.8 tryptophan synthase subunit beta compare
PS417_26740 -4.9 -12.8 homoserine acetyltransferase compare
PS417_16465 -4.9 -10.8 sirohydrochlorin ferrochelatase compare
PS417_23810 -4.8 -13.9 acetolactate synthase 3 catalytic subunit compare
PS417_01855 -4.8 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_27795 -4.7 -2.1 orotate phosphoribosyltransferase compare
PS417_18595 -4.7 -6.3 3-isopropylmalate dehydratase compare
PS417_04420 -4.6 -11.7 histidinol dehydrogenase compare
PS417_02005 -4.3 -15.5 glutamate synthase compare
PS417_22690 -4.3 -5.8 phosphogluconate dehydratase compare
PS417_09725 -4.2 -10.2 transporter compare
PS417_26745 -4.2 -7.4 methionine biosynthesis protein MetW compare
PS417_12855 -4.1 -7.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01850 -4.0 -10.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18395 -4.0 -4.6 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_23545 -3.9 -4.6 gamma-glutamyl kinase compare
PS417_27195 -3.8 -2.2 N-acetylglutamate synthase compare
PS417_00180 -3.6 -4.3 tryptophan synthase subunit alpha compare
PS417_23995 -3.6 -1.6 preprotein translocase subunit SecG compare
PS417_05595 -3.6 -8.7 ornithine carbamoyltransferase compare
PS417_18530 -3.6 -4.4 O-succinylhomoserine sulfhydrylase compare
PS417_01565 -3.6 -3.9 imidazole glycerol phosphate synthase compare
PS417_02000 -3.5 -15.0 glutamate synthase compare
PS417_01560 -3.5 -4.1 imidazoleglycerol-phosphate dehydratase compare
PS417_06375 -3.4 -2.1 deoxycytidine triphosphate deaminase compare
PS417_26890 -3.4 -5.6 dihydroxy-acid dehydratase compare
PS417_12290 -3.4 -8.0 sulfite reductase compare
PS417_24155 -3.4 -4.5 ATP-binding protein compare
PS417_18400 -3.3 -3.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_25710 -3.3 -2.8 indole-3-glycerol-phosphate synthase compare
PS417_02415 -3.2 -5.1 phosphoserine phosphatase compare
PS417_23110 -3.2 -7.3 2-isopropylmalate synthase compare
PS417_26730 -3.2 -2.0 pyrroline-5-carboxylate reductase compare
PS417_14940 -3.0 -4.0 LysR family transcriptional regulator compare
PS417_25715 -2.8 -6.4 anthranilate phosphoribosyltransferase compare
PS417_20125 -2.8 -6.6 phosphoribosylglycinamide formyltransferase compare
PS417_01580 -2.7 -2.8 imidazole glycerol phosphate synthase compare
PS417_08125 -2.6 -1.9 prephenate dehydratase compare
PS417_01570 -2.5 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20985 -2.5 -3.9 porin compare
PS417_21035 -2.1 -8.9 multidrug transporter compare
PS417_01605 -2.0 -2.6 phosphoglycerate mutase compare
PS417_26985 -1.7 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20160 -1.6 -4.2 cysteine synthase compare
PS417_18390 -1.6 -4.1 LacI family transcriptional regulator compare
PS417_23775 -1.6 -3.1 exodeoxyribonuclease V subunit beta compare
PS417_27875 -1.5 -8.9 histidine kinase compare
PS417_27835 -1.5 -5.0 endoribonuclease compare
PS417_22450 -1.5 -1.9 ATP-dependent DNA helicase RuvA compare
PS417_09705 -1.5 -3.5 hypothetical protein compare
PS417_28220 -1.5 -3.2 LysR family transcriptional regulator compare
PS417_09695 -1.4 -2.0 hydrolase compare
PS417_22445 -1.3 -4.8 ATP-dependent DNA helicase RuvB compare
PS417_20610 -1.2 -1.8 hypothetical protein compare
PS417_09700 -1.2 -3.3 transaldolase compare
PS417_22385 -1.2 -7.9 quinolinate synthase A compare
PS417_09720 -1.1 -2.0 methyltransferase compare
PS417_08205 -1.1 -3.6 acetyltransferase compare
PS417_18755 -1.1 -2.7 CrtK compare
PS417_26995 -1.1 -5.7 phosphoserine phosphatase compare
PS417_03495 -1.1 -2.3 type III secretory protein EscS compare
PS417_01915 -1.1 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_23770 -1.1 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_20665 -1.1 -6.0 hypothetical protein compare
PS417_21125 -1.1 -5.1 phosphoadenosine phosphosulfate reductase compare
PS417_07170 -1.1 -3.2 hypothetical protein compare
PS417_11845 -1.1 -3.2 RpiR family transcriptional regulator compare
PS417_16715 -1.1 -2.4 DoxX family protein compare
PS417_24835 -1.1 -3.6 hypothetical protein compare
PS417_03925 -1.1 -5.1 nicotinate-nucleotide pyrophosphorylase compare
PS417_01145 -1.1 -1.3 taurine transporter ATP-binding subunit compare
PS417_09710 -1.0 -2.5 dehydrogenase compare
PS417_10995 -1.0 -2.7 GntR family transcriptional regulator compare
PS417_26990 -1.0 -1.8 RNA pyrophosphohydrolase compare
PS417_08225 -1.0 -3.8 acetolactate synthase compare
PS417_19835 -1.0 -1.8 flagellar biosynthesis protein FliS compare
PS417_01095 -1.0 -2.0 amino acid ABC transporter ATP-binding protein compare
PS417_08195 -0.9 -5.8 hypothetical protein compare
PS417_23900 -0.9 -6.3 poly(A) polymerase compare
PS417_18690 -0.9 -3.4 aromatic amino acid aminotransferase compare
PS417_06600 -0.9 -1.1 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_11925 -0.9 -2.3 hypothetical protein compare
PS417_16490 -0.9 -2.0 cell division protein FtsK compare
PS417_08245 -0.9 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07470 -0.9 -1.7 hypothetical protein compare
PS417_22570 -0.9 -1.1 H-NS histone compare
PS417_27870 -0.9 -3.1 ATP-dependent DNA helicase RecG compare
PS417_05985 -0.8 -2.7 chemotaxis protein CheY compare
PS417_08200 -0.8 -2.9 hypothetical protein compare
PS417_05365 -0.8 -1.2 FAD-binding protein compare
PS417_23950 -0.8 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_21750 -0.8 -6.6 acetyl-CoA synthetase compare
PS417_06620 -0.8 -2.0 hypothetical protein compare
PS417_24100 -0.8 -4.6 transcriptional regulator PdhR compare
PS417_04595 -0.8 -2.5 cell division protein MraZ compare
PS417_24840 -0.8 -1.4 hypothetical protein compare
PS417_05200 -0.8 -2.7 DNA recombination protein RecO compare
PS417_01710 -0.8 -3.6 histidine utilization repressor compare
PS417_06205 -0.8 -5.3 methionine aminopeptidase compare
PS417_12565 -0.7 -2.3 2-dehydro-3-deoxygluconokinase compare
PS417_20025 -0.7 -1.6 alpha-ribazole phosphatase compare
PS417_09915 -0.7 -1.7 hypothetical protein compare
PS417_00925 -0.7 -1.7 hypothetical protein compare
PS417_18885 -0.7 -2.1 GntR family transcriptional regulator compare
PS417_08770 -0.7 -1.3 hypothetical protein compare
PS417_28070 -0.7 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_17645 -0.7 -1.2 RND transporter compare
PS417_01995 -0.7 -1.9 hypothetical protein compare
PS417_28140 -0.7 -1.8 asparaginase compare
PS417_27035 -0.7 -3.8 FAD-linked oxidase compare
PS417_27435 -0.7 -3.5 polyphosphate kinase compare
PS417_15090 -0.7 -2.4 hypothetical protein compare
PS417_07875 -0.7 -0.9 hypothetical protein compare
PS417_12355 -0.7 -2.1 magnesium chelatase compare
PS417_04180 -0.7 -1.7 GntR family transcriptional regulator compare
PS417_28230 -0.7 -2.2 transcriptional regulator compare
PS417_13010 -0.7 -1.8 alpha/beta hydrolase compare
PS417_08230 -0.7 -1.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_13205 -0.7 -1.4 isochorismate-pyruvate lyase compare
PS417_17855 -0.7 -2.2 major facilitator transporter compare
PS417_17415 -0.7 -2.6 histidine kinase compare
PS417_11615 -0.7 -1.4 urea ABC transporter ATP-binding protein compare
PS417_02150 -0.7 -3.7 potassium/proton antiporter compare
PS417_07165 -0.7 -3.1 dihydrodipicolinate synthase compare
PS417_06645 -0.7 -4.0 RNA polymerase-associated protein RapA compare
PS417_20030 -0.7 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_27605 -0.6 -2.9 hypothetical protein compare
PS417_24535 -0.6 -1.6 membrane protein compare
PS417_05695 -0.6 -2.9 transcriptional regulator compare
PS417_03310 -0.6 -4.1 carbonate dehydratase compare
PS417_22620 -0.6 -2.5 pyruvate kinase compare
PS417_27940 -0.6 -1.5 type VI secretion protein compare
PS417_05815 -0.6 -3.0 recombinase RecA compare
PS417_25920 -0.6 -4.0 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_22115 -0.6 -2.3 transcriptional regulator compare
PS417_10490 -0.6 -1.7 delta-aminolevulinic acid dehydratase compare
PS417_05570 -0.6 -2.1 DeoR faimly transcriptional regulator compare
PS417_19425 -0.6 -0.9 allantoicase compare
PS417_15305 -0.6 -2.4 type VI secretion protein compare
PS417_05650 -0.6 -2.8 leucyl-tRNA synthetase compare
PS417_13490 -0.6 -1.3 hypothetical protein compare
PS417_26100 -0.6 -2.8 amino acid ABC transporter compare
PS417_21955 -0.6 -2.2 dehydrogenase compare
PS417_04270 -0.6 -3.7 ribonuclease G compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_07420 -0.6 -2.4 restriction endonuclease compare
PS417_24125 -0.6 -1.9 hypothetical protein compare
PS417_17435 -0.6 -3.5 dehydrogenase compare
PS417_07175 -0.6 -2.3 beta-lactamase compare
PS417_00345 -0.6 -1.6 copper-binding protein compare
PS417_01435 -0.6 -1.0 hypothetical protein compare
PS417_27155 -0.6 -1.0 aliphatic sulfonates transport ATP-binding subunit compare
PS417_20635 -0.6 -0.8 ABC transporter ATP-binding protein compare
PS417_24935 -0.6 -0.6 hypothetical protein compare
PS417_24765 -0.6 -2.7 membrane protein compare
PS417_18025 -0.6 -1.9 cytochrome C compare
PS417_26040 -0.6 -2.2 malate synthase compare
PS417_15780 -0.6 -2.0 membrane protein compare
PS417_26755 -0.6 -1.2 nucleoside-triphosphate diphosphatase compare
PS417_26445 -0.6 -1.3 ArsR family transcriptional regulator compare
PS417_13510 -0.6 -1.0 polyketide cyclase compare
PS417_27705 -0.6 -1.2 amino acid dehydrogenase compare
PS417_04705 -0.6 -1.0 hypothetical protein compare
PS417_13820 -0.6 -2.8 UDP-glucose 6-dehydrogenase compare
PS417_09745 -0.6 -2.8 peptide ABC transporter substrate-binding protein compare
PS417_08540 -0.6 -2.0 RNA helicase compare
PS417_20480 -0.6 -1.7 hypothetical protein compare
PS417_10245 -0.6 -0.9 hypothetical protein compare
PS417_13140 -0.6 -1.1 oxidoreductase compare
PS417_04940 -0.6 -3.1 outer membrane usher protein compare
PS417_02365 -0.5 -2.3 hypothetical protein compare
PS417_14235 -0.5 -1.5 hypothetical protein compare
PS417_01620 -0.5 -1.1 preprotein translocase subunit SecB compare
PS417_16475 -0.5 -1.8 camphor resistance protein CrcB compare
PS417_00295 -0.5 -3.3 hypothetical protein compare
PS417_27690 -0.5 -1.9 XRE family transcriptional regulator compare
PS417_15750 -0.5 -1.4 protease compare
PS417_04810 -0.5 -1.5 poly(beta-D-mannuronate) lyase compare
PS417_20620 -0.5 -2.7 glycosyl transferase family 2 compare
PS417_24630 -0.5 -2.0 ATP-binding protein compare
PS417_06200 -0.5 -2.8 protein-PII uridylyltransferase compare
PS417_00660 -0.5 -1.9 DSBA oxidoreductase compare
PS417_19030 -0.5 -2.3 sodium:dicarboxylate symporter compare
PS417_17480 -0.5 -3.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_25940 -0.5 -3.0 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_04375 -0.5 -1.6 ABC transporter ATP-binding protein compare
PS417_22895 -0.5 -2.8 tyrosine recombinase XerD compare
PS417_04425 -0.5 -2.5 histidinol-phosphate aminotransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source D-Ribose across organisms