Experiment set2IT051 for Agrobacterium fabrum C58

Compare to:

2-Keto-D-gluconic acid hemicalcium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -8.1 -5.6 phosphoribosylformylglycinamidine synthetase II compare
Atu1750 -7.6 -7.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0400 -7.2 -5.0 orotate phosphoribosyltransferase compare
Atu1687 -7.0 -11.6 anthranilate phosphoribosyltransferase compare
Atu0679 -6.7 -6.6 ATP phosphoribosyltransferase compare
Atu2709 -6.7 -19.8 3-isopropylmalate dehydratase, large subunit compare
Atu2726 -6.7 -23.7 pyruvate carboxylase compare
Atu2791 -6.6 -9.1 3-isopropylmalate dehydrogenase compare
Atu3706 -6.6 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu2264 -6.6 -13.4 2-isopropylmalate synthase compare
Atu2289 -6.4 -18.6 anthranilate synthase component I and II compare
Atu0099 -6.3 -9.2 prephenate dehydratase compare
Atu1075 -6.3 -9.6 amidophosphoribosyltransferase compare
Atu1845 -6.3 -4.5 phosphoribosylformylglycinamidine synthase I compare
Atu2718 -6.2 -7.4 homoserine O-succinyltransferase compare
Atu2040 -6.2 -6.0 phosphoserine phosphatase compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1308 -6.1 -7.8 aspartate carbamoyl transferase catalytic subunit compare
Atu1688 -6.1 -6.0 indole-3-glycerol-phosphate synthase compare
Atu1205 -6.1 -15.8 threonine dehydratase compare
Atu0678 -6.1 -5.9 histidyl-tRNA synthetase compare
Atu0038 -6.0 -5.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -6.0 -16.8 acetolactate synthase III, large subunit compare
Atu1140 -5.9 -6.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1307 -5.8 -7.3 dihydroorotase compare
Atu0537 -5.7 -7.8 histidinol dehydrogenase compare
Atu0298 -5.6 -8.6 orotidine 5 compare
Atu3754 -5.5 -9.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0399 -5.5 -7.6 dihydroorotase compare
Atu0486 -5.5 -8.3 dihydroorotate dehydrogenase compare
Atu0043 -5.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu2790 -5.3 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu1141 -5.3 -10.5 Phosphoribosylglycinamide synthetase compare
Atu1588 -5.3 -13.1 homoserine dehydrogenase compare
Atu0432 -5.2 -8.8 O-succinylhomoserine sulfhydrylase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu0039 -5.1 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu3885 -5.1 -11.8 inositol monophosphatase compare
Atu0647 -5.1 -7.7 phosphoribosylamine--glycine ligase compare
Atu3755 -4.9 -8.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4691 -4.7 -18.0 2-hydroxyacid dehydrogenase compare
Atu2747 -4.6 -12.9 hypothetical protein compare
Atu3707 -4.5 -5.1 phosphoserine aminotransferase compare
Atu2015 -4.5 -18.4 aminotransferase compare
Atu3783 -4.5 -18.1 glutamate synthase subunit beta compare
Atu3483 -4.2 -8.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3739 -4.1 -3.3 phosphoglycerate kinase compare
Atu3784 -4.1 -24.5 glutamate synthase large subunit compare
Atu3482 -4.0 -12.1 pantoate--beta-alanine ligase compare
Atu1030 -3.8 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0641 -3.8 -5.8 hypothetical protein compare
Atu1686 -3.8 -19.6 peptidyl-prolyl cis-trans isomerse D compare
Atu1359 -3.7 -2.1 dnaK deletion suppressor protein compare
Atu3469 -3.6 -4.3 phosphoglyceromutase compare
Atu1589 -3.6 -7.4 aminotransferase, class I compare
Atu0723 -3.5 -2.4 FAD dependent oxidoreductase compare
Atu4687 -3.5 -16.1 amino acid ABC transporter substrate-binding protein compare
Atu2548 -3.4 -16.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4688 -3.3 -15.7 amino acid ABC transporter permease compare
Atu1463 -3.3 -10.2 glycine cleavage system component H compare
Atu1446 -3.3 -4.1 two component response regulator compare
Atu1462 -3.2 -17.6 glycine cleavage system protein P2 compare
Atu0792 -3.2 -9.4 hypothetical protein compare
Atu3731 -3.1 -11.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu4689 -3.1 -14.2 amino acid ABC transporter permease compare
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4690 -3.0 -8.0 amino acid ABC transporter ATPase/permease compare
Atu1456 -3.0 -13.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1464 -2.9 -11.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu2205 -2.9 -6.4 transcriptional regulator, MarR family compare
Atu1526 -2.8 -11.5 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu1454 -2.7 -13.4 siroheme synthase compare
Atu2650 -2.7 -13.4 glycerol-3-phosphate dehydrogenase compare
Atu1844 -2.6 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1455 -2.6 -3.2 hypothetical protein compare
Atu4098 -2.5 -13.7 quinolinate synthetase compare
Atu0769 -2.4 -2.4 protoheme IX farnesyltransferase compare
Atu2155 -2.4 -16.2 methionine synthase compare
Atu0029 -2.4 -7.2 S-adenosylhomocysteine hydrolase compare
Atu0030 -2.2 -2.6 phosphocarrier protein HPr compare
Atu4096 -2.1 -8.6 nicotinate-nucleotide pyrophosphorylase compare
Atu2569 -2.0 -14.7 thiamine biosynthesis protein compare
Atu3999 -1.9 -3.0 dithiobiotin synthetase compare
Atu0346 -1.9 -3.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3290 -1.8 -7.9 phosphomethylpyrimidine kinase compare
Atu3997 -1.8 -13.0 biotin synthetase compare
Atu3288 -1.8 -8.0 hydroxyethylthiazole kinase compare
Atu4000 -1.8 -12.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4097 -1.8 -8.2 L-aspartate oxidase compare
Atu5173 -1.7 -2.0 dehydrogenase compare
Atu3998 -1.7 -10.6 8-amino-7-oxononanoate synthase compare
Atu8115 -1.6 -4.6 Hypothetical Protein compare
Atu0421 -1.6 -2.2 ABC transporter, membrane spanning protein compare
Atu1748 -1.5 -8.2 NIFU-like protein compare
Atu2127 -1.5 -7.6 L-carnitine dehydratase compare
Atu0195 -1.5 -9.0 gluconokinase compare
Atu0322 -1.4 -5.7 enoyl CoA hydratase compare
Atu3289 -1.4 -4.8 thiamine-phosphate pyrophosphorylase compare
Atu1457 -1.4 -2.0 hypothetical protein compare
Atu2296 -1.4 -8.4 2-dehydro-3-deoxygluconokinase compare
Atu2017 -1.4 -1.7 hypothetical protein compare
Atu4001 -1.3 -5.7 3-oxoacyl-ACP synthase compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu2209 -1.3 -3.9 pyrroline-5-carboxylate reductase compare
Atu6114 -1.2 -1.8 hypothetical protein compare
Atu2554 -1.2 -2.4 lysyl-tRNA synthetase compare
Atu5115 -1.2 -1.0 hypothetical protein compare
Atu4317 -1.2 -4.5 TetR family transcriptional regulator compare
Atu0188 -1.2 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu4773 -1.1 -1.0 two component response regulator compare
Atu5164 -1.1 -0.6 type IV secretion protein AvhB3 compare
Atu0434 -1.1 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4072 -1.1 -1.5 nodulation protein N compare
Atu3732 -1.0 -5.0 hemolysin compare
Atu4471 -1.0 -7.0 ABC transporter substrate-binding protein compare
Atu2808 -1.0 -5.6 cobyric acid synthase compare
Atu4470 -1.0 -7.2 iron ABC transporter ATPase compare
Atu1685 -1.0 -1.2 hypothetical protein compare
Atu0876 -1.0 -2.1 superoxide dismutase compare
Atu0026 -1.0 -1.0 hypothetical protein compare
Atu5467 -1.0 -2.2 hypothetical protein compare
Atu2020 -1.0 -2.4 transcriptional regulator, TetR family compare
Atu2125 -1.0 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu2800 -1.0 -2.0 precorrin-3B C17-methyltransferase compare
Atu3712 -1.0 -1.8 hypothetical protein compare
Atu1445 -0.9 -4.3 two component sensor kinase compare
Atu1604 -0.9 -7.6 poly-beta-hydroxybutyrate synthase compare
Atu2801 -0.9 -3.3 precorrin-2 C20 methyltransferase compare
Atu2807 -0.9 -4.4 cob(I)alamin adenosyltransferase compare
Atu0895 -0.9 -3.0 ABC transporter, substrate binding protein compare
Atu1572 -0.9 -4.1 hydrolase compare
Atu0422 -0.9 -1.8 ABC transporter, membrane spanning protein compare
Atu3668 -0.9 -3.0 siderophore biosynthesis protein compare
Atu3908 -0.9 -5.4 GntR family transcriptional regulator compare
Atu4468 -0.9 -5.3 iron transport ABC transporter permease compare
Atu1372 -0.9 -4.7 hypothetical protein compare
Atu3287 -0.9 -2.2 thiamine biosynthesis associated protein compare
Atu0501 -0.9 -6.5 acyl-CoA dehydrogenase compare
Atu2335 -0.9 -2.2 hypothetical protein compare
Atu2793 -0.8 -3.1 cobyrinic acid a,c-diamide synthase compare
Atu1542 -0.8 -3.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2633 -0.8 -2.3 RhtB family transporter compare
Atu2237 -0.8 -4.1 cytochrome c1 compare
Atu1242 -0.8 -5.4 cytochrome oxidase assembly factor compare
Atu4173 -0.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu4711 -0.8 -3.7 two component sensor kinase compare
Atu1902 -0.8 -3.2 transketolase compare
Atu1774 -0.8 -3.6 ABC transporter, substrate binding protein (peptide) compare
Atu5142 -0.8 -0.7 hypothetical protein compare
Atu0677 -0.8 -1.2 hypothetical protein compare
Atu0189 -0.7 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0332 -0.7 -4.9 RNA polymerase sigma-54 factor compare
Atu3486 -0.7 -1.5 DeoR family transcriptional regulator compare
Atu3730 -0.7 -1.1 hypothetical protein compare
Atu1469 -0.7 -1.2 hypothetical protein compare
Atu1364 -0.7 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2193 -0.7 -0.8 hypothetical protein compare
Atu3183 -0.7 -0.9 hypothetical protein compare
Atu2802 -0.7 -4.0 precorrin-8X methylmutase compare
Atu2796 -0.7 -3.1 precorrin-4 C11-methyltransferase compare
Atu5425 -0.7 -3.6 2-hydroxychromene-2-carboxylate isomerase compare
Atu0768 -0.7 -5.2 cytochrome-c oxidase chain I compare
Atu1891 -0.7 -2.2 cobalamin biosynthesis protein compare
Atu0141 -0.7 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu4677 -0.7 -1.2 hypothetical protein compare
Atu0893 -0.7 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2684 -0.7 -1.6 hypothetical protein compare
Atu0361 -0.7 -1.3 transcriptional regulator compare
Atu4346 -0.7 -3.6 hypothetical protein compare
Atu2555 -0.7 -2.7 L-lysine 2,3-aminomutase compare
Atu2805 -0.7 -3.3 cobalamin synthesis protein compare
Atu3727 -0.7 -1.5 hypothetical protein compare
Atu2809 -0.7 -3.9 cobalamin biosynthesis protein compare
Atu2795 -0.7 -4.3 cobalamin biosynthetic protein compare
Atu1419 -0.7 -3.8 transcriptional regulator, GntR family compare
Atu0601 -0.7 -4.2 oxidoreductase compare
Atu0503 -0.6 -4.8 enoyl-CoA hydratase compare
Atu6160 -0.6 -2.0 conserved hypothetical protein compare
Atu3750 -0.6 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu5145 -0.6 -1.4 acetyltransferase compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4144 -0.6 -0.9 hypothetical protein compare
Atu2140 -0.6 -1.7 hypothetical protein compare
Atu0837 -0.6 -3.0 transcriptional regulator, MarR family compare
Atu1805 -0.6 -2.7 hypothetical protein compare
Atu0939 -0.6 -2.5 PemI protein compare
Atu3345 -0.6 -2.1 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu1810 -0.6 -0.7 hypothetical protein compare
Atu0770 -0.6 -2.9 cytochrome C oxidase assembly protein compare
Atu6158 -0.6 -2.0 conserved hypothetical protein compare
Atu1009 -0.6 -1.8 hypothetical protein compare
Atu2797 -0.6 -2.0 cobalamin biosynthesis protein compare
Atu2376 -0.6 -0.4 hypothetical protein compare
Atu5448 -0.6 -2.0 hypothetical protein compare
Atu4187 -0.6 -1.1 tRNA-Met compare
Atu0062 -0.6 -3.2 transcriptional regulator, ROK family compare
Atu0300 -0.6 -3.5 methyltransferase compare
Atu2804 -0.6 -4.0 cobaltochelatase subunit compare
Atu0115 -0.6 -0.8 hypothetical protein compare
Atu5437 -0.6 -1.7 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 2-Keto-D-gluconic acid hemicalcium salt hydrate in Agrobacterium fabrum C58

For carbon source 2-Keto-D-gluconic acid hemicalcium salt hydrate across organisms