Experiment set2IT050 for Pseudomonas simiae WCS417

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01565 -7.3 -5.3 imidazole glycerol phosphate synthase compare
PS417_25720 -7.0 -8.3 anthranilate synthase component II compare
PS417_18585 -6.6 -4.6 3-isopropylmalate dehydrogenase compare
PS417_27040 -6.4 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.3 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_18600 -5.8 -3.9 isopropylmalate isomerase compare
PS417_02005 -5.6 -12.0 glutamate synthase compare
PS417_23800 -5.4 -10.4 ketol-acid reductoisomerase compare
PS417_00160 -5.4 -7.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_01575 -5.4 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25725 -5.3 -15.4 anthranilate synthase component I compare
PS417_18560 -5.3 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_16465 -5.3 -11.2 sirohydrochlorin ferrochelatase compare
PS417_00185 -5.2 -5.0 tryptophan synthase subunit beta compare
PS417_23805 -5.1 -6.0 acetolactate synthase 3 regulatory subunit compare
PS417_23545 -5.0 -3.5 gamma-glutamyl kinase compare
PS417_02510 -5.0 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04415 -4.9 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04420 -4.9 -11.4 histidinol dehydrogenase compare
PS417_12290 -4.7 -9.5 sulfite reductase compare
PS417_26740 -4.7 -12.1 homoserine acetyltransferase compare
PS417_18595 -4.7 -6.3 3-isopropylmalate dehydratase compare
PS417_27795 -4.5 -2.1 orotate phosphoribosyltransferase compare
PS417_24745 -4.5 -6.2 gamma-glutamyl phosphate reductase compare
PS417_01850 -4.4 -9.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.4 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_27835 -4.3 -11.1 endoribonuclease compare
PS417_18530 -4.2 -5.5 O-succinylhomoserine sulfhydrylase compare
PS417_26745 -4.2 -7.2 methionine biosynthesis protein MetW compare
PS417_02000 -3.9 -13.1 glutamate synthase compare
PS417_05595 -3.8 -8.6 ornithine carbamoyltransferase compare
PS417_25715 -3.8 -6.0 anthranilate phosphoribosyltransferase compare
PS417_25710 -3.7 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_26890 -3.6 -6.9 dihydroxy-acid dehydratase compare
PS417_23110 -3.5 -6.6 2-isopropylmalate synthase compare
PS417_23995 -3.4 -1.6 preprotein translocase subunit SecG compare
PS417_00165 -3.2 -8.0 galactonate dehydratase conserved
PS417_06375 -3.1 -2.0 deoxycytidine triphosphate deaminase compare
PS417_24155 -3.1 -4.2 ATP-binding protein compare
PS417_27195 -3.0 -2.7 N-acetylglutamate synthase compare
PS417_12855 -3.0 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26730 -3.0 -1.9 pyrroline-5-carboxylate reductase compare
PS417_08125 -2.9 -1.9 prephenate dehydratase compare
PS417_02415 -2.9 -6.7 phosphoserine phosphatase compare
PS417_20160 -2.9 -6.5 cysteine synthase compare
PS417_28220 -2.8 -3.7 LysR family transcriptional regulator compare
PS417_26995 -2.7 -10.7 phosphoserine phosphatase compare
PS417_01605 -2.6 -2.5 phosphoglycerate mutase compare
PS417_01570 -2.5 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_00180 -2.5 -3.4 tryptophan synthase subunit alpha compare
PS417_00155 -2.4 -3.0 2-dehydro-3-deoxygalactonokinase compare
PS417_01580 -2.4 -2.6 imidazole glycerol phosphate synthase compare
PS417_01560 -2.4 -3.5 imidazoleglycerol-phosphate dehydratase compare
PS417_20125 -2.1 -3.4 phosphoribosylglycinamide formyltransferase compare
PS417_20985 -1.9 -3.5 porin compare
PS417_02485 -1.8 -7.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_13510 -1.8 -2.2 polyketide cyclase compare
PS417_06685 -1.7 -1.6 beta-ketoadipyl CoA thiolase compare
PS417_07170 -1.6 -3.2 hypothetical protein compare
PS417_09915 -1.5 -2.1 hypothetical protein compare
PS417_23775 -1.5 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_13165 -1.5 -3.5 peroxidase compare
PS417_24370 -1.4 -1.4 (2Fe-2S)-binding protein compare
PS417_22570 -1.4 -1.5 H-NS histone compare
PS417_23770 -1.4 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_03525 -1.3 -2.0 hypothetical protein compare
PS417_18930 -1.2 -2.1 restriction endonuclease subunit S compare
PS417_26990 -1.2 -1.9 RNA pyrophosphohydrolase compare
PS417_12355 -1.2 -2.0 magnesium chelatase compare
PS417_14515 -1.2 -2.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_04585 -1.2 -1.7 hypothetical protein compare
PS417_18590 -1.2 -2.3 SAM-dependent methyltransferase compare
PS417_18690 -1.2 -3.8 aromatic amino acid aminotransferase compare
PS417_27435 -1.2 -5.6 polyphosphate kinase compare
PS417_07875 -1.1 -1.3 hypothetical protein compare
PS417_21360 -1.1 -1.5 termination factor Rho compare
PS417_08230 -1.1 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_11925 -1.1 -2.4 hypothetical protein compare
PS417_22445 -1.1 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_08225 -1.0 -4.0 acetolactate synthase compare
PS417_08130 -1.0 -2.2 aspartate aminotransferase compare
PS417_24535 -1.0 -2.7 membrane protein compare
PS417_22385 -1.0 -6.9 quinolinate synthase A compare
PS417_18885 -1.0 -1.4 GntR family transcriptional regulator compare
PS417_01435 -1.0 -1.4 hypothetical protein compare
PS417_22450 -1.0 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_20665 -1.0 -5.2 hypothetical protein compare
PS417_06645 -1.0 -4.9 RNA polymerase-associated protein RapA compare
PS417_08205 -1.0 -2.4 acetyltransferase compare
PS417_01375 -0.9 -2.5 hypothetical protein compare
PS417_24935 -0.9 -0.9 hypothetical protein compare
PS417_02555 -0.9 -7.7 exoribonuclease R compare
PS417_16715 -0.9 -2.0 DoxX family protein compare
PS417_19425 -0.9 -1.1 allantoicase compare
PS417_01710 -0.9 -3.3 histidine utilization repressor compare
PS417_24835 -0.9 -1.8 hypothetical protein compare
PS417_06165 -0.9 -3.8 thiamine biosynthesis protein ThiF compare
PS417_21705 -0.9 -3.7 arginine N-succinyltransferase compare
PS417_01995 -0.9 -1.0 hypothetical protein compare
PS417_19600 -0.9 -1.5 exonuclease compare
PS417_16080 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_00170 -0.8 -5.9 glucarate transporter compare
PS417_27490 -0.8 -2.2 hypothetical protein compare
PS417_14455 -0.8 -2.1 polyketide cyclase compare
PS417_23900 -0.8 -5.3 poly(A) polymerase compare
PS417_17855 -0.8 -3.1 major facilitator transporter compare
PS417_18025 -0.8 -2.0 cytochrome C compare
PS417_08200 -0.8 -2.6 hypothetical protein compare
PS417_09680 -0.8 -1.8 hydrolase compare
PS417_02720 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_03925 -0.8 -5.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_11455 -0.8 -2.2 hypothetical protein compare
PS417_27585 -0.8 -1.4 diaminopimelate epimerase compare
PS417_09085 -0.8 -1.5 hypothetical protein compare
PS417_08365 -0.8 -0.9 hypothetical protein compare
PS417_06200 -0.8 -3.5 protein-PII uridylyltransferase compare
PS417_22795 -0.8 -2.3 exclusion suppressor FxsA compare
PS417_16490 -0.8 -1.7 cell division protein FtsK compare
PS417_00150 -0.8 -3.0 4,5-dioxygenase compare
PS417_03310 -0.8 -2.5 carbonate dehydratase compare
PS417_01095 -0.8 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_27010 -0.8 -4.7 threonine dehydratase compare
PS417_03730 -0.7 -3.0 phosphate acetyltransferase compare
PS417_28315 -0.7 -2.2 zinc ABC transporter permease compare
PS417_28080 -0.7 -5.5 phosphate ABC transporter permease compare
PS417_03465 -0.7 -1.1 type III secretion protein compare
PS417_02365 -0.7 -2.4 hypothetical protein compare
PS417_13790 -0.7 -3.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_26240 -0.7 -1.4 N-methylproline demethylase compare
PS417_14940 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_06680 -0.7 -5.0 nuclease PIN compare
PS417_02980 -0.7 -1.3 chemotaxis protein compare
PS417_00705 -0.7 -1.2 MarR family transcriptional regulator compare
PS417_27870 -0.7 -1.9 ATP-dependent DNA helicase RecG compare
PS417_16005 -0.7 -2.0 ATPase compare
PS417_10740 -0.7 -2.9 hypothetical protein compare
PS417_07010 -0.7 -2.2 pseudouridine synthase compare
PS417_15085 -0.7 -2.7 ATPase AAA compare
PS417_15780 -0.7 -1.9 membrane protein compare
PS417_08025 -0.7 -0.6 acetylornithine aminotransferase compare
PS417_11845 -0.7 -2.7 RpiR family transcriptional regulator compare
PS417_06865 -0.7 -1.7 transporter compare
PS417_28070 -0.7 -3.3 phosphate ABC transporter ATP-binding protein compare
PS417_13730 -0.7 -1.8 hypothetical protein compare
PS417_13145 -0.7 -2.0 50S ribosomal protein L21 compare
PS417_21700 -0.7 -2.8 arginine N-succinyltransferase compare
PS417_13445 -0.7 -1.6 D-aminopeptidase compare
PS417_07470 -0.6 -1.0 hypothetical protein compare
PS417_05575 -0.6 -4.0 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_00550 -0.6 -0.9 hypothetical protein compare
PS417_18400 -0.6 -2.3 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_27515 -0.6 -2.6 heme biosynthesis protein HemY compare
PS417_23575 -0.6 -2.4 hypothetical protein compare
PS417_21630 -0.6 -1.7 magnesium transporter compare
PS417_10675 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_03260 -0.6 -1.2 5S ribosomal RNA compare
PS417_14295 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_11520 -0.6 -1.8 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_17000 -0.6 -2.0 MerR family transcriptional regulator compare
PS417_00485 -0.6 -1.8 ABC transporter permease compare
PS417_14200 -0.6 -1.9 hypothetical protein compare
PS417_20520 -0.6 -1.8 3-phosphoglycerate kinase compare
PS417_07455 -0.6 -0.8 glutamine amidotransferase compare
PS417_03495 -0.6 -1.4 type III secretory protein EscS compare
PS417_00295 -0.6 -3.2 hypothetical protein compare
PS417_10265 -0.6 -1.7 peptidase compare
PS417_07000 -0.6 -1.6 hypothetical protein compare
PS417_12310 -0.6 -3.5 methionine synthase compare
PS417_26755 -0.6 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_00845 -0.6 -1.1 transcriptional regulator compare
PS417_07595 -0.6 -2.3 PasA protein compare
PS417_20620 -0.6 -2.5 glycosyl transferase family 2 compare
PS417_02020 -0.6 -2.1 LysR family transcriptional regulator compare
PS417_05905 -0.6 -0.9 hypothetical protein compare
PS417_13175 -0.6 -1.6 iron transporter compare
PS417_07165 -0.6 -1.8 dihydrodipicolinate synthase compare
PS417_04180 -0.6 -1.6 GntR family transcriptional regulator compare
PS417_09440 -0.6 -1.2 MerR family transcriptional regulator compare
PS417_10985 -0.6 -0.7 NADH:flavin oxidoreductase compare
PS417_11810 -0.6 -1.7 oxidoreductase compare
PS417_02340 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_11180 -0.6 -1.3 TetR family transcriptional regulator compare
PS417_02370 -0.6 -1.4 ADP-ribose pyrophosphatase compare
PS417_11400 -0.6 -0.6 phosphoglycerate mutase compare
PS417_03435 -0.6 -2.7 cytochrome P450 compare
PS417_21320 -0.5 -1.7 transcriptional regulator compare
PS417_10205 -0.5 -2.7 hypothetical protein compare
PS417_27875 -0.5 -3.7 histidine kinase compare
PS417_09325 -0.5 -2.0 peptidase S41 compare
PS417_05650 -0.5 -1.9 leucyl-tRNA synthetase compare
PS417_20030 -0.5 -2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_19275 -0.5 -0.7 hypothetical protein compare
PS417_06245 -0.5 -0.8 zinc metallopeptidase RseP compare
PS417_00900 -0.5 -1.4 4-aminobutyrate aminotransferase compare
PS417_12870 -0.5 -1.1 enoyl-CoA hydratase compare
PS417_27960 -0.5 -2.3 Hcp1 family type VI secretion system effector compare
PS417_08245 -0.5 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21750 -0.5 -4.5 acetyl-CoA synthetase compare
PS417_16320 -0.5 -1.5 protein tyrosine phosphatase compare
PS417_05825 -0.5 -1.8 cytochrome D ubiquinol oxidase subunit II compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Galactose in Pseudomonas simiae WCS417

For carbon source D-Galactose across organisms