Experiment set2IT050 for Agrobacterium fabrum C58

Compare to:

2-Keto-D-gluconic acid hemicalcium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1308 -7.5 -7.3 aspartate carbamoyl transferase catalytic subunit compare
Atu2289 -6.9 -17.9 anthranilate synthase component I and II compare
Atu0038 -6.9 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0679 -6.8 -6.6 ATP phosphoribosyltransferase compare
Atu1588 -6.7 -10.2 homoserine dehydrogenase compare
Atu1687 -6.6 -10.7 anthranilate phosphoribosyltransferase compare
Atu1205 -6.5 -12.5 threonine dehydratase compare
Atu2709 -6.5 -18.8 3-isopropylmalate dehydratase, large subunit compare
Atu2036 -6.4 -14.9 acetolactate synthase III, large subunit compare
Atu0486 -6.4 -7.6 dihydroorotate dehydrogenase compare
Atu1750 -6.3 -5.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -6.3 -12.6 prephenate dehydratase compare
Atu3707 -6.3 -4.4 phosphoserine aminotransferase compare
Atu2264 -6.3 -14.6 2-isopropylmalate synthase compare
Atu0298 -6.3 -8.6 orotidine 5 compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -6.1 -6.0 indole-3-glycerol-phosphate synthase compare
Atu0400 -6.0 -6.7 orotate phosphoribosyltransferase compare
Atu1307 -5.9 -8.1 dihydroorotase compare
Atu0678 -5.9 -5.7 histidyl-tRNA synthetase compare
Atu2791 -5.9 -8.9 3-isopropylmalate dehydrogenase compare
Atu3706 -5.8 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu1850 -5.8 -6.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0432 -5.8 -11.8 O-succinylhomoserine sulfhydrylase compare
Atu2726 -5.7 -25.7 pyruvate carboxylase compare
Atu0537 -5.7 -7.8 histidinol dehydrogenase compare
Atu3755 -5.5 -6.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2040 -5.5 -6.5 phosphoserine phosphatase compare
Atu3885 -5.5 -9.9 inositol monophosphatase compare
Atu2718 -5.5 -10.5 homoserine O-succinyltransferase compare
Atu0043 -5.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu2790 -5.3 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu0041 -5.2 -3.5 glutamine amidotransferase compare
Atu0039 -5.1 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -5.0 -10.6 dihydroorotase compare
Atu0647 -4.7 -7.2 phosphoribosylamine--glycine ligase compare
Atu1075 -4.7 -10.8 amidophosphoribosyltransferase compare
Atu2747 -4.6 -15.3 hypothetical protein compare
Atu3754 -4.5 -8.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4691 -4.4 -13.5 2-hydroxyacid dehydrogenase compare
Atu3469 -4.3 -4.2 phosphoglyceromutase compare
Atu2015 -4.3 -12.8 aminotransferase compare
Atu3783 -4.2 -18.6 glutamate synthase subunit beta compare
Atu1141 -4.2 -6.4 Phosphoribosylglycinamide synthetase compare
Atu1845 -4.1 -6.3 phosphoribosylformylglycinamidine synthase I compare
Atu3784 -4.0 -26.5 glutamate synthase large subunit compare
Atu1140 -4.0 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1844 -3.9 -5.9 Phosphoribosylformylglycinamidine synthetase compare
Atu1686 -3.8 -16.4 peptidyl-prolyl cis-trans isomerse D compare
Atu3482 -3.6 -9.7 pantoate--beta-alanine ligase compare
Atu1589 -3.6 -9.0 aminotransferase, class I compare
Atu0792 -3.6 -7.0 hypothetical protein compare
Atu3483 -3.5 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2548 -3.4 -18.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4690 -3.4 -12.8 amino acid ABC transporter ATPase/permease compare
Atu4687 -3.3 -17.5 amino acid ABC transporter substrate-binding protein compare
Atu1030 -3.2 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3739 -3.1 -4.3 phosphoglycerate kinase compare
Atu3731 -3.1 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
Atu0040 -3.0 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1456 -3.0 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2650 -3.0 -12.7 glycerol-3-phosphate dehydrogenase compare
Atu4688 -3.0 -14.7 amino acid ABC transporter permease compare
Atu1464 -2.8 -7.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu0641 -2.7 -6.1 hypothetical protein compare
Atu1454 -2.7 -8.8 siroheme synthase compare
Atu1446 -2.7 -4.1 two component response regulator compare
Atu1463 -2.7 -11.2 glycine cleavage system component H compare
Atu1462 -2.6 -16.6 glycine cleavage system protein P2 compare
Atu4689 -2.6 -13.4 amino acid ABC transporter permease compare
Atu1359 -2.6 -2.1 dnaK deletion suppressor protein compare
Atu1526 -2.5 -10.7 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu4096 -2.5 -9.8 nicotinate-nucleotide pyrophosphorylase compare
Atu0346 -2.5 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2155 -2.4 -17.7 methionine synthase compare
Atu0029 -2.4 -7.6 S-adenosylhomocysteine hydrolase compare
Atu2205 -2.3 -6.4 transcriptional regulator, MarR family compare
Atu4098 -2.3 -9.8 quinolinate synthetase compare
Atu0030 -2.0 -2.6 phosphocarrier protein HPr compare
Atu3997 -2.0 -12.1 biotin synthetase compare
Atu3290 -2.0 -12.3 phosphomethylpyrimidine kinase compare
Atu4097 -2.0 -10.2 L-aspartate oxidase compare
Atu2569 -1.9 -11.9 thiamine biosynthesis protein compare
Atu3289 -1.8 -4.1 thiamine-phosphate pyrophosphorylase compare
Atu1748 -1.8 -9.3 NIFU-like protein compare
Atu6114 -1.8 -1.9 hypothetical protein compare
Atu3730 -1.8 -2.3 hypothetical protein compare
Atu3998 -1.8 -10.0 8-amino-7-oxononanoate synthase compare
Atu8115 -1.7 -4.6 Hypothetical Protein compare
Atu1457 -1.7 -2.2 hypothetical protein compare
Atu4000 -1.7 -12.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3999 -1.7 -4.4 dithiobiotin synthetase compare
Atu0195 -1.7 -7.3 gluconokinase compare
Atu3288 -1.6 -6.9 hydroxyethylthiazole kinase compare
Atu5513 -1.6 -1.8 cold shock protein compare
Atu1455 -1.6 -6.1 hypothetical protein compare
Atu1904 -1.6 -2.9 transcriptional regulator compare
Atu1572 -1.5 -8.3 hydrolase compare
Atu4001 -1.4 -8.4 3-oxoacyl-ACP synthase compare
Atu0322 -1.4 -4.8 enoyl CoA hydratase compare
Atu3763 -1.4 -2.3 hypothetical protein compare
Atu0422 -1.3 -2.6 ABC transporter, membrane spanning protein compare
Atu2296 -1.3 -7.5 2-dehydro-3-deoxygluconokinase compare
Atu4616 -1.2 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu1685 -1.2 -1.4 hypothetical protein compare
Atu2209 -1.2 -2.7 pyrroline-5-carboxylate reductase compare
Atu4317 -1.2 -2.7 TetR family transcriptional regulator compare
Atu4469 -1.2 -3.4 iron ABC transporter permease compare
Atu0421 -1.1 -1.9 ABC transporter, membrane spanning protein compare
Atu5142 -1.1 -1.7 hypothetical protein compare
Atu2125 -1.1 -2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu2127 -1.1 -6.2 L-carnitine dehydratase compare
Atu4470 -1.1 -5.2 iron ABC transporter ATPase compare
Atu5164 -1.1 -0.6 type IV secretion protein AvhB3 compare
Atu4471 -1.1 -7.7 ABC transporter substrate-binding protein compare
Atu3486 -1.1 -2.1 DeoR family transcriptional regulator compare
Atu1604 -1.1 -8.0 poly-beta-hydroxybutyrate synthase compare
Atu8052 -1.0 -1.0 hypothetical protein compare
Atu2020 -1.0 -2.0 transcriptional regulator, TetR family compare
Atu3732 -0.9 -4.5 hemolysin compare
Atu0768 -0.9 -7.1 cytochrome-c oxidase chain I compare
Atu5468 -0.9 -1.5 hypothetical protein compare
Atu2808 -0.9 -5.1 cobyric acid synthase compare
Atu3908 -0.9 -6.3 GntR family transcriptional regulator compare
Atu4468 -0.9 -3.8 iron transport ABC transporter permease compare
Atu6153 -0.9 -1.8 conserved hypothetical protein compare
Atu1182 -0.9 -1.9 hypothetical protein compare
Atu5430 -0.9 -0.8 hypothetical protein compare
Atu0769 -0.9 -1.3 protoheme IX farnesyltransferase compare
Atu4711 -0.9 -4.3 two component sensor kinase compare
Atu2795 -0.9 -4.2 cobalamin biosynthetic protein compare
Atu2809 -0.8 -5.3 cobalamin biosynthesis protein compare
Atu1705 -0.8 -3.8 SEC-independent protein translocase protein compare
Atu8020 -0.8 -2.2 hypothetical protein compare
Atu2083 -0.8 -3.3 DNA repair protein RecN compare
Atu0503 -0.8 -6.4 enoyl-CoA hydratase compare
Atu2554 -0.8 -1.7 lysyl-tRNA synthetase compare
Atu0062 -0.8 -4.2 transcriptional regulator, ROK family compare
Atu1891 -0.8 -2.7 cobalamin biosynthesis protein compare
Atu3012 -0.8 -1.2 hypothetical protein compare
Atu4773 -0.8 -1.5 two component response regulator compare
Atu0280 -0.8 -2.1 hypothetical protein compare
Atu5155 -0.8 -1.4 MarR family transcriptional regulator compare
Atu0939 -0.8 -1.7 PemI protein compare
Atu3219 -0.8 -5.7 dihydroxy-acid dehydratase compare
Atu0501 -0.8 -4.9 acyl-CoA dehydrogenase compare
Atu4161 -0.7 -1.8 hypothetical protein compare
Atu0419 -0.7 -1.7 two component sensor kinase compare
Atu0413 -0.7 -1.7 stress induced protein compare
Atu2805 -0.7 -3.2 cobalamin synthesis protein compare
Atu2798 -0.7 -2.2 precorrin-6y methyltransferase compare
Atu2797 -0.7 -2.2 cobalamin biosynthesis protein compare
Atu0361 -0.7 -1.8 transcriptional regulator compare
Atu1902 -0.7 -3.0 transketolase compare
Atu2796 -0.7 -3.2 precorrin-4 C11-methyltransferase compare
Atu0115 -0.7 -1.0 hypothetical protein compare
Atu6106 -0.7 -1.2 conserved hypothetical protein compare
Atu0291 -0.7 -4.1 hypothetical protein compare
Atu8162 -0.7 -1.2 hypothetical protein compare
Atu0976 -0.7 -1.2 cycL protein compare
Atu2800 -0.7 -3.2 precorrin-3B C17-methyltransferase compare
Atu1725 -0.7 -2.1 hypothetical protein compare
Atu5125 -0.7 -1.7 GntR family transcriptional regulator compare
Atu2376 -0.7 -0.5 hypothetical protein compare
Atu1542 -0.7 -2.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2793 -0.7 -2.8 cobyrinic acid a,c-diamide synthase compare
Atu0723 -0.7 -1.0 FAD dependent oxidoreductase compare
Atu4346 -0.7 -2.4 hypothetical protein compare
Atu1952 -0.7 -1.2 hypothetical protein compare
Atu1445 -0.6 -2.7 two component sensor kinase compare
Atu0703 -0.6 -1.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1570 -0.6 -0.8 hypothetical protein compare
Atu0601 -0.6 -4.7 oxidoreductase compare
Atu4072 -0.6 -1.1 nodulation protein N compare
Atu2804 -0.6 -4.4 cobaltochelatase subunit compare
Atu2432 -0.6 -1.6 hypothetical protein compare
Atu2237 -0.6 -2.9 cytochrome c1 compare
Atu2239 -0.6 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0206 -0.6 -1.2 hypothetical protein compare
Atu0332 -0.6 -3.7 RNA polymerase sigma-54 factor compare
Atu3423 -0.6 -1.3 hypothetical protein compare
Atu1354 -0.6 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2807 -0.6 -3.3 cob(I)alamin adenosyltransferase compare
Atu0770 -0.6 -3.1 cytochrome C oxidase assembly protein compare
Atu0189 -0.6 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1028 -0.6 -1.3 hypothetical protein compare
Atu0401 -0.6 -2.7 fructokinase compare
Atu0876 -0.6 -1.1 superoxide dismutase compare
Atu2802 -0.6 -2.8 precorrin-8X methylmutase compare
Atu0331 -0.6 -1.2 sigma-54 modulation protein compare
Atu5183 -0.6 -1.8 hypothetical protein compare
Atu1419 -0.6 -2.3 transcriptional regulator, GntR family compare
Atu2770 -0.6 -3.0 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu8023 -0.6 -0.9 hypothetical protein compare
Atu1242 -0.6 -3.0 cytochrome oxidase assembly factor compare
Atu6100 -0.6 -2.7 conserved hypothetical protein compare
Atu3343 -0.6 -3.2 trehalose utilization-like protein compare
Atu2442 -0.6 -1.7 hypothetical protein compare
Atu0101 -0.6 -1.8 cytochrome c compare
Atu1774 -0.6 -3.6 ABC transporter, substrate binding protein (peptide) compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 2-Keto-D-gluconic acid hemicalcium salt hydrate in Agrobacterium fabrum C58

For carbon source 2-Keto-D-gluconic acid hemicalcium salt hydrate across organisms