Experiment set2IT049 for Pseudomonas simiae WCS417

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.5 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_18585 -6.0 -5.8 3-isopropylmalate dehydrogenase compare
PS417_01565 -5.9 -6.1 imidazole glycerol phosphate synthase compare
PS417_18595 -5.7 -4.9 3-isopropylmalate dehydratase compare
PS417_01575 -5.5 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18560 -5.3 -14.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -5.1 -18.8 anthranilate synthase component I compare
PS417_18600 -5.1 -4.8 isopropylmalate isomerase compare
PS417_04415 -5.0 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23800 -5.0 -12.4 ketol-acid reductoisomerase compare
PS417_12855 -4.9 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02005 -4.9 -12.5 glutamate synthase compare
PS417_18530 -4.7 -7.1 O-succinylhomoserine sulfhydrylase compare
PS417_27795 -4.7 -2.1 orotate phosphoribosyltransferase compare
PS417_01855 -4.7 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_26740 -4.6 -13.5 homoserine acetyltransferase compare
PS417_04420 -4.6 -12.8 histidinol dehydrogenase compare
PS417_00185 -4.5 -5.3 tryptophan synthase subunit beta compare
PS417_24745 -4.5 -6.8 gamma-glutamyl phosphate reductase compare
PS417_23810 -4.3 -15.2 acetolactate synthase 3 catalytic subunit compare
PS417_09725 -4.3 -8.8 transporter compare
PS417_26745 -4.2 -9.4 methionine biosynthesis protein MetW compare
PS417_16465 -4.2 -11.4 sirohydrochlorin ferrochelatase compare
PS417_25720 -4.2 -9.2 anthranilate synthase component II compare
PS417_02415 -3.9 -8.1 phosphoserine phosphatase compare
PS417_05595 -3.8 -10.6 ornithine carbamoyltransferase compare
PS417_25710 -3.8 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_01850 -3.8 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27195 -3.8 -2.2 N-acetylglutamate synthase compare
PS417_02000 -3.7 -14.9 glutamate synthase compare
PS417_23805 -3.6 -7.9 acetolactate synthase 3 regulatory subunit compare
PS417_23110 -3.6 -8.7 2-isopropylmalate synthase compare
PS417_02510 -3.5 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_00180 -3.5 -4.1 tryptophan synthase subunit alpha compare
PS417_23995 -3.5 -1.5 preprotein translocase subunit SecG compare
PS417_26890 -3.3 -7.4 dihydroxy-acid dehydratase compare
PS417_24155 -3.3 -4.4 ATP-binding protein compare
PS417_10945 -3.2 -9.0 Xylose isomerase (EC 5.3.1.5) (from data) conserved
PS417_26730 -3.1 -1.9 pyrroline-5-carboxylate reductase compare
PS417_12290 -3.0 -7.5 sulfite reductase compare
PS417_25715 -2.9 -4.9 anthranilate phosphoribosyltransferase compare
PS417_10950 -2.9 -12.6 AraC family transcriptional regulator conserved
PS417_12690 -2.9 -7.9 xylulose kinase conserved
PS417_20985 -2.9 -3.7 porin compare
PS417_01560 -2.9 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_21035 -2.8 -12.5 multidrug transporter compare
PS417_23545 -2.8 -2.4 gamma-glutamyl kinase compare
PS417_14940 -2.7 -3.6 LysR family transcriptional regulator compare
PS417_01605 -2.5 -2.1 phosphoglycerate mutase compare
PS417_26040 -2.4 -6.3 malate synthase compare
PS417_08125 -2.4 -1.7 prephenate dehydratase compare
PS417_01580 -2.4 -1.3 imidazole glycerol phosphate synthase compare
PS417_22130 -2.2 -7.4 glucose/xylose ABC transporter, ATPase component (from data) conserved
PS417_01570 -2.2 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22690 -2.2 -4.3 phosphogluconate dehydratase compare
PS417_06375 -2.1 -1.8 deoxycytidine triphosphate deaminase compare
PS417_20160 -2.1 -3.2 cysteine synthase compare
PS417_20125 -2.1 -5.6 phosphoribosylglycinamide formyltransferase compare
PS417_08130 -1.8 -3.0 aspartate aminotransferase compare
PS417_08220 -1.8 -1.5 epimerase compare
PS417_22140 -1.8 -8.7 glucose/xylose ABC transporter, permease component 2 (from data) conserved
PS417_22680 -1.8 -4.9 chemotaxis protein CheY compare
PS417_04270 -1.7 -9.1 ribonuclease G compare
PS417_22445 -1.7 -4.7 ATP-dependent DNA helicase RuvB compare
PS417_22145 -1.6 -9.3 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) conserved
PS417_22135 -1.6 -9.6 glucose/xylose ABC transporter, permease component 1 (from data) conserved
PS417_09705 -1.5 -2.5 hypothetical protein compare
PS417_08155 -1.5 -3.1 integration host factor subunit beta compare
PS417_16005 -1.4 -2.9 ATPase compare
PS417_26995 -1.4 -6.2 phosphoserine phosphatase compare
PS417_09700 -1.3 -3.4 transaldolase compare
PS417_08230 -1.3 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_12310 -1.3 -7.9 methionine synthase compare
PS417_27305 -1.3 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_19335 -1.3 -2.8 isochorismatase compare
PS417_16715 -1.2 -2.6 DoxX family protein compare
PS417_26985 -1.2 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_12355 -1.2 -3.1 magnesium chelatase compare
PS417_09915 -1.2 -1.7 hypothetical protein compare
PS417_08200 -1.2 -3.0 hypothetical protein compare
PS417_08225 -1.2 -4.2 acetolactate synthase compare
PS417_01710 -1.2 -4.6 histidine utilization repressor compare
PS417_13730 -1.2 -2.9 hypothetical protein compare
PS417_23900 -1.1 -6.8 poly(A) polymerase compare
PS417_24935 -1.1 -1.0 hypothetical protein compare
PS417_23775 -1.1 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_09695 -1.1 -1.2 hydrolase compare
PS417_24765 -1.1 -3.7 membrane protein compare
PS417_24835 -1.1 -4.3 hypothetical protein compare
PS417_07875 -1.1 -1.2 hypothetical protein compare
PS417_27010 -1.1 -7.1 threonine dehydratase compare
PS417_26510 -1.1 -5.7 5,10-methylenetetrahydrofolate reductase compare
PS417_28220 -1.1 -1.3 LysR family transcriptional regulator compare
PS417_27835 -1.0 -4.2 endoribonuclease compare
PS417_20340 -1.0 -2.6 hypothetical protein compare
PS417_16990 -1.0 -5.3 acyl-CoA dehydrogenase compare
PS417_27940 -1.0 -1.9 type VI secretion protein compare
PS417_26990 -1.0 -1.8 RNA pyrophosphohydrolase compare
PS417_23770 -1.0 -2.1 exodeoxyribonuclease V subunit alpha compare
PS417_14980 -1.0 -1.4 universal stress protein UspA compare
PS417_27875 -1.0 -5.1 histidine kinase compare
PS417_22675 -1.0 -5.9 histidine kinase compare
PS417_09710 -0.9 -1.9 dehydrogenase compare
PS417_06200 -0.9 -3.6 protein-PII uridylyltransferase compare
PS417_27035 -0.9 -3.2 FAD-linked oxidase compare
PS417_28070 -0.9 -4.6 phosphate ABC transporter ATP-binding protein compare
PS417_26445 -0.9 -2.1 ArsR family transcriptional regulator compare
PS417_16570 -0.9 -6.1 isocitrate lyase compare
PS417_22840 -0.9 -1.5 tRNA-Met compare
PS417_09085 -0.9 -1.4 hypothetical protein compare
PS417_00550 -0.9 -1.1 hypothetical protein compare
PS417_24840 -0.9 -1.0 hypothetical protein compare
PS417_19275 -0.9 -1.5 hypothetical protein compare
PS417_09210 -0.9 -1.3 TetR family transcriptional regulator compare
PS417_16515 -0.8 -1.4 Clp protease ClpS compare
PS417_00045 -0.8 -2.2 glycerol acyltransferase compare
PS417_27435 -0.8 -4.1 polyphosphate kinase compare
PS417_16490 -0.8 -1.4 cell division protein FtsK compare
PS417_08245 -0.8 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_04595 -0.8 -2.5 cell division protein MraZ compare
PS417_05200 -0.8 -2.7 DNA recombination protein RecO compare
PS417_27595 -0.8 -2.0 recombinase XerC compare
PS417_06095 -0.8 -1.8 energy transducer TonB compare
PS417_17485 -0.8 -2.8 membrane protein compare
PS417_21125 -0.7 -4.1 phosphoadenosine phosphosulfate reductase compare
PS417_04960 -0.7 -1.5 hypothetical protein compare
PS417_16195 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_18780 -0.7 -1.1 flavin reductase compare
PS417_04410 -0.7 -1.1 hypothetical protein compare
PS417_24290 -0.7 -2.9 hypothetical protein compare
PS417_23490 -0.7 -0.9 dihydrofolate reductase compare
PS417_28080 -0.7 -5.4 phosphate ABC transporter permease compare
PS417_07655 -0.7 -1.9 glycerophosphodiester phosphodiesterase compare
PS417_19065 -0.7 -1.0 monooxygenase compare
PS417_28515 -0.7 -2.8 16S rRNA methyltransferase compare
PS417_08685 -0.7 -1.2 flagellar hook-length control protein FliK compare
PS417_21705 -0.7 -3.2 arginine N-succinyltransferase compare
PS417_10710 -0.7 -1.7 GNAT family acetyltransferase compare
PS417_23380 -0.7 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_03925 -0.7 -2.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_02560 -0.7 -1.5 23S rRNA methyltransferase compare
PS417_25940 -0.7 -4.0 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_19095 -0.7 -1.1 hypothetical protein compare
PS417_18690 -0.7 -2.6 aromatic amino acid aminotransferase compare
PS417_22385 -0.7 -4.5 quinolinate synthase A compare
PS417_07170 -0.7 -2.2 hypothetical protein compare
PS417_22630 -0.7 -2.0 hypothetical protein compare
PS417_21480 -0.7 -0.7 23S rRNA pseudouridylate synthase compare
PS417_19665 -0.7 -2.4 flagellar motor protein MotD compare
PS417_20665 -0.7 -3.1 hypothetical protein compare
PS417_23915 -0.7 -2.3 pantoate--beta-alanine ligase compare
PS417_12725 -0.7 -2.3 AraC family transcriptional regulator compare
PS417_16000 -0.6 -1.4 chemotaxis protein CheY compare
PS417_17495 -0.6 -2.9 multidrug ABC transporter permease compare
PS417_15235 -0.6 -1.7 short-chain dehydrogenase compare
PS417_22115 -0.6 -2.2 transcriptional regulator compare
PS417_09720 -0.6 -1.0 methyltransferase compare
PS417_27605 -0.6 -2.3 hypothetical protein compare
PS417_11040 -0.6 -3.8 aldose epimerase compare
PS417_09440 -0.6 -1.7 MerR family transcriptional regulator compare
PS417_05570 -0.6 -2.7 DeoR faimly transcriptional regulator compare
PS417_08090 -0.6 -0.9 3-oxoacyl-ACP reductase compare
PS417_19425 -0.6 -0.8 allantoicase compare
PS417_02020 -0.6 -2.6 LysR family transcriptional regulator compare
PS417_08205 -0.6 -2.0 acetyltransferase compare
PS417_23135 -0.6 -0.9 GTP-binding protein compare
PS417_14295 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_07175 -0.6 -2.1 beta-lactamase compare
PS417_04860 -0.6 -3.8 ATPase compare
PS417_05815 -0.6 -2.1 recombinase RecA compare
PS417_13800 -0.6 -1.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_28075 -0.6 -2.5 phosphate ABC transporter permease compare
PS417_27005 -0.6 -0.8 membrane protein compare
PS417_27340 -0.6 -2.1 NADPH:quinone oxidoreductase compare
PS417_23575 -0.6 -1.4 hypothetical protein compare
PS417_27975 -0.6 -3.5 type VI secretion protein compare
PS417_16680 -0.6 -1.7 MFS transporter compare
PS417_06895 -0.6 -2.2 DNA-binding protein compare
PS417_21690 -0.6 -2.2 N-succinylarginine dihydrolase compare
PS417_28085 -0.6 -4.4 phosphate-binding protein compare
PS417_09715 -0.6 -2.2 hypothetical protein compare
PS417_00085 -0.6 -1.2 16S rRNA methyltransferase compare
PS417_12090 -0.6 -2.7 hypothetical protein compare
PS417_28510 -0.6 -2.7 chromosome partitioning protein compare
PS417_10010 -0.6 -1.4 Replication protein P compare
PS417_20185 -0.6 -2.5 ketosteroid isomerase compare
PS417_01995 -0.6 -1.1 hypothetical protein compare
PS417_10445 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_21750 -0.6 -4.8 acetyl-CoA synthetase compare
PS417_05300 -0.6 -4.2 glucose dehydrogenase compare
PS417_11520 -0.6 -1.8 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_05160 -0.6 -0.9 DNA polymerase III subunit chi compare
PS417_04275 -0.6 -4.2 hypothetical protein compare
PS417_06145 -0.6 -0.7 hypothetical protein compare
PS417_13255 -0.6 -1.6 ABC transporter compare
PS417_09680 -0.5 -1.2 hydrolase compare
PS417_00385 -0.5 -0.7 Fur family transcriptional regulator compare
PS417_20480 -0.5 -1.4 hypothetical protein compare
PS417_18105 -0.5 -0.9 iron-dicitrate transporter substrate-binding subunit compare
PS417_16510 -0.5 -1.6 Clp protease ClpX compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Xylose in Pseudomonas simiae WCS417

For carbon source D-Xylose across organisms