Experiment set2IT049 for Agrobacterium fabrum C58

Compare to:

L-Sorbose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1464 -8.4 -5.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu1687 -8.4 -5.8 anthranilate phosphoribosyltransferase compare
Atu1850 -8.0 -5.6 phosphoribosylformylglycinamidine synthetase II compare
Atu2791 -7.9 -5.5 3-isopropylmalate dehydrogenase compare
Atu0486 -7.6 -5.2 dihydroorotate dehydrogenase compare
Atu1463 -7.5 -9.0 glycine cleavage system component H compare
Atu0590 -7.4 -7.2 transcriptional regulator repressor compare
Atu0099 -7.4 -7.2 prephenate dehydratase compare
Atu2289 -7.3 -15.6 anthranilate synthase component I and II compare
Atu3754 -7.2 -5.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3337 -7.2 -7.0 LacI family transcriptional regulator compare
Atu2264 -7.2 -9.8 2-isopropylmalate synthase compare
Atu4295 -7.1 -11.9 shikimate 5-dehydrogenase compare
Atu2709 -7.0 -15.7 3-isopropylmalate dehydratase, large subunit compare
Atu1844 -7.0 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1140 -6.9 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1205 -6.8 -11.4 threonine dehydratase compare
Atu3706 -6.8 -6.7 D-3-phosphoglycerate dehydrogenase compare
Atu0038 -6.7 -6.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2040 -6.6 -4.5 phosphoserine phosphatase compare
Atu0679 -6.5 -6.3 ATP phosphoribosyltransferase compare
Atu2726 -6.5 -22.3 pyruvate carboxylase compare
Atu2036 -6.5 -16.2 acetolactate synthase III, large subunit compare
Atu0062 -6.4 -12.3 transcriptional regulator, ROK family compare
Atu1845 -6.4 -4.2 phosphoribosylformylglycinamidine synthase I compare
Atu1462 -6.3 -13.5 glycine cleavage system protein P2 compare
Atu1075 -6.3 -8.7 amidophosphoribosyltransferase compare
Atu1307 -6.3 -7.5 dihydroorotase compare
Atu1308 -6.3 -6.5 aspartate carbamoyl transferase catalytic subunit compare
Atu4296 -6.3 -15.7 dehydrogenase compare
Atu4297 -6.2 -9.3 AraC family transcriptional regulator compare
Atu3755 -6.1 -5.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1688 -6.0 -5.9 indole-3-glycerol-phosphate synthase compare
Atu0298 -6.0 -8.2 orotidine 5 compare
Atu1141 -6.0 -9.2 Phosphoribosylglycinamide synthetase compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0030 -6.0 -2.4 phosphocarrier protein HPr compare
Atu0400 -5.9 -7.0 orotate phosphoribosyltransferase compare
Atu0401 -5.8 -6.5 fructokinase compare
Atu0537 -5.8 -7.9 histidinol dehydrogenase compare
Atu0399 -5.8 -7.9 dihydroorotase compare
Atu2718 -5.8 -9.6 homoserine O-succinyltransferase compare
Atu0678 -5.7 -5.5 histidyl-tRNA synthetase compare
Atu3482 -5.6 -13.0 pantoate--beta-alanine ligase compare
Atu3707 -5.5 -5.3 phosphoserine aminotransferase compare
Atu2532 -5.5 -6.5 transcriptional regulator, MarR family compare
Atu1750 -5.5 -5.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1588 -5.4 -11.5 homoserine dehydrogenase compare
Atu0432 -5.3 -10.9 O-succinylhomoserine sulfhydrylase compare
Atu0043 -5.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu3885 -5.1 -11.3 inositol monophosphatase compare
Atu1359 -5.1 -2.0 dnaK deletion suppressor protein compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu0647 -5.0 -7.6 phosphoribosylamine--glycine ligase compare
Atu0039 -5.0 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.8 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2015 -4.8 -12.5 aminotransferase compare
Atu3483 -4.6 -6.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2790 -4.5 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu1456 -4.3 -15.2 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3280 -4.2 -11.0 GntR family transcriptional regulator compare
Atu3731 -4.2 -13.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu2650 -4.0 -16.2 glycerol-3-phosphate dehydrogenase compare
Atu2155 -3.9 -22.3 methionine synthase compare
Atu3739 -3.8 -4.6 phosphoglycerate kinase compare
Atu0503 -3.8 -19.3 enoyl-CoA hydratase compare
Atu0502 -3.6 -11.3 acetyl-CoA acetyltransferase compare
Atu2237 -3.5 -7.7 cytochrome c1 compare
Atu4128 -3.4 -17.1 GMC type oxidoreductase compare
Atu3469 -3.3 -4.4 phosphoglyceromutase compare
Atu2495 -3.3 -9.6 flavoprotein oxidoreductase compare
Atu0101 -3.2 -5.1 cytochrome c compare
Atu1454 -3.2 -8.9 siroheme synthase compare
Atu1851 -3.1 -4.6 BolA/YrbA family protein compare
Atu0501 -3.0 -15.1 acyl-CoA dehydrogenase compare
Atu4773 -3.0 -3.3 two component response regulator compare
Atu1286 -2.9 -6.9 hypothetical protein compare
Atu4099 -2.9 -13.3 hypothetical protein compare
Atu4711 -2.9 -7.7 two component sensor kinase compare
Atu2205 -2.8 -8.6 transcriptional regulator, MarR family compare
Atu1242 -2.8 -13.3 cytochrome oxidase assembly factor compare
Atu2238 -2.8 -9.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0322 -2.7 -10.7 enoyl CoA hydratase compare
Atu3898 -2.7 -9.3 DeoR family transcriptional regulator compare
Atu0768 -2.7 -14.5 cytochrome-c oxidase chain I compare
Atu0770 -2.6 -9.8 cytochrome C oxidase assembly protein compare
Atu3783 -2.6 -16.6 glutamate synthase subunit beta compare
Atu1074 -2.6 -16.0 NAD/NADP dependent oxidoreductase compare
Atu0331 -2.6 -2.9 sigma-54 modulation protein compare
Atu2239 -2.6 -3.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3730 -2.6 -2.3 hypothetical protein compare
Atu0641 -2.5 -5.5 hypothetical protein compare
Atu0769 -2.5 -2.9 protoheme IX farnesyltransferase compare
Atu4685 -2.4 -13.0 LacI family transcriptional regulator compare
Atu0771 -2.3 -8.8 cytochrome c oxidase subunit III compare
Atu0767 -2.3 -8.8 cytochrome c oxidase subunit II compare
Atu1455 -2.2 -4.9 hypothetical protein compare
Atu0346 -2.2 -2.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0300 -2.2 -8.2 methyltransferase compare
Atu3784 -2.1 -17.0 glutamate synthase large subunit compare
Atu3815 -2.1 -9.8 GntR family transcriptional regulator compare
Atu3290 -2.1 -12.6 phosphomethylpyrimidine kinase compare
Atu3598 -2.1 -2.5 thiol:disulfide interchange protein compare
Atu4702 -2.0 -8.1 GntR family transcriptional regulator compare
Atu0434 -2.0 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3577 -2.0 -10.2 transcriptional regulator compare
Atu0040 -1.9 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2554 -1.9 -3.8 lysyl-tRNA synthetase compare
Atu0405 -1.9 -13.1 long-chain-fatty-acid-CoA-ligase compare
Atu3288 -1.8 -7.3 hydroxyethylthiazole kinase compare
Atu0205 -1.8 -6.6 methylmalonate-semialdehyde dehydrogenase compare
Atu4232 -1.8 -4.8 GntR family transcriptional regulator compare
Atu2747 -1.8 -11.2 hypothetical protein compare
Atu1163 -1.8 -3.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4364 -1.8 -9.5 LacI family transcriptional regulator compare
Atu2569 -1.7 -10.9 thiamine biosynthesis protein compare
Atu1518 -1.7 -5.6 transcriptional regulator, Fur family compare
Atu4317 -1.7 -3.9 TetR family transcriptional regulator compare
Atu5142 -1.6 -2.5 hypothetical protein compare
Atu1457 -1.6 -1.4 hypothetical protein compare
Atu1339 -1.6 -2.4 ribonuclease E compare
Atu1705 -1.6 -5.7 SEC-independent protein translocase protein compare
Atu1062 -1.6 -2.5 phosphatidylserine synthase compare
Atu2548 -1.5 -10.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3289 -1.5 -3.0 thiamine-phosphate pyrophosphorylase compare
Atu2131 -1.5 -7.0 hypothetical protein compare
Atu0029 -1.5 -6.9 S-adenosylhomocysteine hydrolase compare
Atu1774 -1.4 -7.4 ABC transporter, substrate binding protein (peptide) compare
Atu0912 -1.4 -1.6 Na+/H+ antiporter compare
Atu3740 -1.3 -7.9 fructose bisphosphate aldolase compare
Atu4083 -1.3 -6.7 aldose epimerase compare
Atu3732 -1.3 -6.0 hemolysin compare
Atu1589 -1.3 -4.7 aminotransferase, class I compare
Atu1546 -1.3 -5.3 transcriptional regulator, MerR family compare
Atu0188 -1.3 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu3219 -1.3 -9.1 dihydroxy-acid dehydratase compare
Atu1446 -1.3 -2.5 two component response regulator compare
Atu3886 -1.2 -7.4 lysophospholipase compare
Atu4346 -1.2 -6.3 hypothetical protein compare
Atu4576 -1.2 -7.6 ROK family transcriptional regulator compare
Atu3997 -1.2 -9.6 biotin synthetase compare
Atu0601 -1.2 -6.3 oxidoreductase compare
Atu4477 -1.2 -6.6 TetR family transcriptional regulator compare
Atu3623 -1.2 -3.6 DnaJ family molecular chaperone compare
Atu0837 -1.2 -5.4 transcriptional regulator, MarR family compare
Atu1028 -1.2 -2.3 hypothetical protein compare
Atu1149 -1.2 -1.8 adenylate cyclase compare
Atu0419 -1.2 -1.7 two component sensor kinase compare
Atu0153 -1.2 -5.1 transcriptional regulator, Fur family compare
Atu3624 -1.2 -5.5 stress induced morphogen compare
Atu1686 -1.1 -7.2 peptidyl-prolyl cis-trans isomerse D compare
Atu0190 -1.1 -6.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0687 -1.1 -2.4 hypothetical protein compare
Atu1021 -1.1 -2.0 outer membrane protein compare
Atu4096 -1.1 -6.7 nicotinate-nucleotide pyrophosphorylase compare
Atu0976 -1.1 -4.0 cycL protein compare
Atu3232 -1.1 -4.7 hydroxypyruvate reductase compare
Atu2376 -1.1 -0.9 hypothetical protein compare
Atu6098 -1.1 -0.7 transcriptional regulator, HTH family compare
Atu2209 -1.1 -4.1 pyrroline-5-carboxylate reductase compare
Atu3505 -1.1 -5.8 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2746 -1.0 -3.3 hypothetical protein compare
Atu5540 -1.0 -0.9 hypothetical protein compare
Atu0852 -1.0 -3.2 transcriptional regulator, MarR family compare
Atu4199 -1.0 -5.7 TetR family transcriptional regulator compare
Atu2115 -1.0 -5.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4825 -1.0 -5.1 dehydrogenase compare
Atu3712 -0.9 -2.0 hypothetical protein compare
Atu4674 -0.9 -6.5 GntR family transcriptional regulator compare
Atu0636 -0.9 -4.8 hypothetical protein compare
Atu0031 -0.9 -1.4 PTS system, IIA component compare
Atu4824 -0.9 -5.2 IclR family transcriptional regulator compare
Atu0876 -0.9 -1.1 superoxide dismutase compare
Atu2555 -0.9 -3.0 L-lysine 2,3-aminomutase compare
Atu2125 -0.9 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu5451 -0.9 -1.0 hypothetical protein compare
Atu0973 -0.9 -4.3 cycH protein compare
Atu4616 -0.8 -1.0 dTDP-4-dehydrorhamnose reductase compare
Atu0926 -0.8 -3.8 hypothetical protein compare
Atu2207 -0.8 -2.1 two component sensor kinase compare
Atu3342 -0.8 -4.9 trehalose utilization-like protein compare
Atu0479 -0.8 -5.5 ABC transporter, substrate binding protein (amino acid) compare
Atu8115 -0.8 -3.2 Hypothetical Protein compare
Atu4166 -0.8 -2.0 UDP-glucose 4-epimerase compare
Atu4505 -0.8 -5.8 LacI family transcriptional regulator compare
Atu4098 -0.8 -5.9 quinolinate synthetase compare
Atu4000 -0.8 -5.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu2267 -0.8 -5.2 hypothetical protein compare
Atu0931 -0.8 -5.2 penicillin binding protein compare
Atu0684 -0.8 -3.5 hypothetical protein compare
Atu0189 -0.8 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu4205 -0.8 -3.8 TetR family transcriptional regulator compare
Atu6114 -0.8 -2.2 hypothetical protein compare
Atu3486 -0.8 -1.3 DeoR family transcriptional regulator compare
Atu5470 -0.8 -1.5 hypothetical protein compare
Atu0536 -0.8 -3.3 hypothetical protein compare
Atu0499 -0.8 -5.1 hypothetical protein compare
Atu8191 -0.8 -1.4 hypothetical protein compare
Atu1445 -0.8 -3.8 two component sensor kinase compare
Atu4599 -0.7 -4.3 IclR family transcriptional regulator compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source L-(-)-sorbose in Agrobacterium fabrum C58

For carbon source L-(-)-sorbose across organisms