Experiment set2IT048 for Agrobacterium fabrum C58
L-Sorbose carbon source
Group: carbon sourceMedia: MOPS minimal media_noCarbon + L-(-)-sorbose (10 mM)
Culturing: Agro_ML11, 24-well transparent microplate; Multitron, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 10/20/20
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 30 genes in this experiment
For carbon source L-(-)-sorbose in Agrobacterium fabrum C58
For carbon source L-(-)-sorbose across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glycine, serine and threonine metabolism
- Glycerophospholipid metabolism
- Glycolysis / Gluconeogenesis
- Pentose phosphate pathway
- Fatty acid metabolism
- Oxidative phosphorylation
- Benzoate degradation via hydroxylation
- Tryptophan metabolism
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Aminophosphonate metabolism
- Lipopolysaccharide biosynthesis
- Glyoxylate and dicarboxylate metabolism
- Methane metabolism
- Nicotinate and nicotinamide metabolism
- Limonene and pinene degradation
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: