Experiment set2IT047 for Variovorax sp. OAS795

Compare to:

casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS01565 -5.5 -12.3 DNA starvation/stationary phase protection protein compare
ABID97_RS06575 -5.2 -8.0 trehalose-phosphatase compare
ABID97_RS09180 -5.2 -3.6 DNA polymerase I compare
ABID97_RS05250 -5.0 -6.8 anthranilate synthase component I compare
ABID97_RS08425 -4.9 -4.7 tryptophan synthase subunit alpha compare
ABID97_RS23425 -4.7 -3.2 tRNA-Pro compare
ABID97_RS29270 -4.3 -1.8 cytochrome b561 domain-containing protein compare
ABID97_RS06345 -4.2 -2.9 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS02510 -4.0 -23.1 NADP-dependent malic enzyme compare
ABID97_RS04760 -4.0 -2.7 SPOR domain-containing protein compare
ABID97_RS07430 -4.0 -9.1 pantoate--beta-alanine ligase compare
ABID97_RS08775 -3.9 -2.7 ribosome small subunit-dependent GTPase A compare
ABID97_RS05275 -3.9 -2.7 anthranilate phosphoribosyltransferase compare
ABID97_RS07435 -3.9 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS12180 -3.8 -2.6 hypothetical protein compare
ABID97_RS07775 -3.7 -3.2 phosphoribosylglycinamide formyltransferase compare
ABID97_RS05280 -3.7 -2.5 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS13860 -3.6 -8.0 hypothetical protein compare
ABID97_RS23455 -3.3 -4.0 hypothetical protein compare
ABID97_RS07855 -3.3 -4.4 ABC transporter ATP-binding protein compare
ABID97_RS20425 -3.3 -3.5 DUF2818 family protein compare
ABID97_RS07840 -3.2 -8.4 branched-chain amino acid ABC transporter permease compare
ABID97_RS08435 -3.2 -2.2 phosphoribosylanthranilate isomerase compare
ABID97_RS23450 -3.2 -5.3 MBOAT family protein compare
ABID97_RS24370 -3.1 -3.2 DUF1841 family protein compare
ABID97_RS23665 -3.1 -2.8 DNA-directed RNA polymerase subunit omega compare
ABID97_RS05260 -3.0 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS05765 -3.0 -2.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS07850 -3.0 -8.8 ABC transporter ATP-binding protein compare
ABID97_RS21150 -3.0 -10.5 FAD-dependent oxidoreductase compare
ABID97_RS16535 -2.9 -9.3 arginine/lysine/ornithine decarboxylase compare
ABID97_RS23325 -2.9 -8.1 cytochrome c biogenesis protein ResB compare
ABID97_RS05755 -2.8 -2.7 glycosyltransferase compare
ABID97_RS03800 -2.8 -2.7 O-antigen ligase family protein compare
ABID97_RS23320 -2.8 -9.0 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS22060 -2.8 -1.7 MFS transporter compare
ABID97_RS07845 -2.8 -12.2 ABC transporter ATP-binding protein compare
ABID97_RS04500 -2.8 -1.9 HPr(Ser) kinase/phosphatase compare
ABID97_RS04505 -2.8 -3.3 ferric iron uptake transcriptional regulator compare
ABID97_RS05670 -2.7 -1.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS03910 -2.7 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS14160 -2.7 -7.4 cell division protein ZapE compare
ABID97_RS16985 -2.7 -3.9 transcriptional repressor LexA compare
ABID97_RS16690 -2.7 -6.5 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS06450 -2.6 -2.5 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS08430 -2.6 -1.8 tryptophan synthase subunit beta compare
ABID97_RS06520 -2.6 -1.8 SAM-dependent methyltransferase compare
ABID97_RS03805 -2.5 -2.1 ATP-binding protein compare
ABID97_RS05370 -2.5 -6.4 ATP-binding protein compare
ABID97_RS05750 -2.5 -2.9 glycosyltransferase compare
ABID97_RS06275 -2.5 -2.3 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS01105 -2.5 -2.1 AMP-binding protein compare
ABID97_RS05925 -2.4 -9.3 LysR substrate-binding domain-containing protein compare
ABID97_RS01650 -2.3 -1.6 orotidine-5'-phosphate decarboxylase compare
ABID97_RS14665 -2.3 -3.5 UvrD-helicase domain-containing protein compare
ABID97_RS23220 -2.3 -2.2 glutamate synthase subunit beta compare
ABID97_RS07405 -2.3 -12.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS16565 -2.2 -11.6 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS07500 -2.2 -2.4 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS10295 -2.2 -2.0 winged helix-turn-helix transcriptional regulator compare
ABID97_RS23915 -2.2 -3.7 heme o synthase compare
ABID97_RS04765 -2.1 -2.4 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS04480 -2.1 -2.8 magnesium/cobalt transporter CorA compare
ABID97_RS27795 -2.1 -1.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS17590 -2.0 -10.0 endopeptidase La compare
ABID97_RS24745 -2.0 -1.5 glutathione S-transferase compare
ABID97_RS14260 -2.0 -6.8 FtsH protease activity modulator HflK compare
ABID97_RS25125 -2.0 -7.0 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS03680 -2.0 -6.7 lysophospholipid transporter LplT compare
ABID97_RS24170 -2.0 -5.2 ATP-binding protein compare
ABID97_RS06140 -1.9 -2.6 DUF484 family protein compare
ABID97_RS14265 -1.9 -7.0 protease modulator HflC compare
ABID97_RS00255 -1.9 -9.4 type IV pilus twitching motility protein PilT compare
ABID97_RS16470 -1.9 -2.3 translational GTPase TypA compare
ABID97_RS25100 -1.9 -6.7 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS05365 -1.9 -4.1 DUF4390 domain-containing protein compare
ABID97_RS06460 -1.9 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS12020 -1.8 -1.9 polysaccharide pyruvyl transferase family protein compare
ABID97_RS02110 -1.8 -12.4 type IV pilus modification protein PilV compare
ABID97_RS06365 -1.8 -1.2 TlpA disulfide reductase family protein compare
ABID97_RS08445 -1.8 -8.2 FimV/HubP family polar landmark protein compare
ABID97_RS02455 -1.8 -3.2 nucleotidyltransferase family protein compare
ABID97_RS02120 -1.8 -8.3 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS15665 -1.8 -7.6 [protein-PII] uridylyltransferase compare
ABID97_RS02115 -1.7 -6.3 PilW family protein compare
ABID97_RS02125 -1.7 -13.9 PilC/PilY family type IV pilus protein compare
ABID97_RS17850 -1.7 -1.4 tetratricopeptide repeat protein compare
ABID97_RS08480 -1.7 -2.0 citrate synthase compare
ABID97_RS24705 -1.7 -4.2 response regulator compare
ABID97_RS02140 -1.7 -9.1 sugar transferase compare
ABID97_RS21165 -1.6 -3.4 energy-dependent translational throttle protein EttA compare
ABID97_RS23440 -1.6 -7.9 A24 family peptidase compare
ABID97_RS02135 -1.6 -4.0 GspH/FimT family pseudopilin compare
ABID97_RS08710 -1.6 -5.6 polynucleotide adenylyltransferase PcnB compare
ABID97_RS23225 -1.6 -10.4 glutamate synthase-related protein compare
ABID97_RS23435 -1.5 -9.0 type II secretion system F family protein compare
ABID97_RS07610 -1.5 -1.3 response regulator transcription factor compare
ABID97_RS17635 -1.5 -3.3 presqualene diphosphate synthase HpnD compare
ABID97_RS23430 -1.5 -8.2 type IV-A pilus assembly ATPase PilB compare
ABID97_RS09595 -1.5 -1.8 Arc family DNA-binding protein compare
ABID97_RS13815 -1.5 -1.8 phage major capsid protein compare
ABID97_RS04960 -1.5 -1.1 ATP-binding protein compare
ABID97_RS13980 -1.5 -1.1 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS21945 -1.5 -4.4 hemolysin family protein compare
ABID97_RS13325 -1.5 -1.4 antibiotic biosynthesis monooxygenase compare
ABID97_RS09935 -1.4 -6.4 hypothetical protein compare
ABID97_RS01840 -1.4 -8.7 DUF1631 family protein compare
ABID97_RS02130 -1.4 -9.5 type IV pilin protein compare
ABID97_RS08570 -1.4 -5.3 ferrous iron transporter B compare
ABID97_RS22860 -1.4 -1.8 MurR/RpiR family transcriptional regulator compare
ABID97_RS02145 -1.4 -6.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS25130 -1.4 -4.6 carboxyl transferase domain-containing protein compare
ABID97_RS07170 -1.4 -7.2 hemolysin family protein compare
ABID97_RS22705 -1.4 -6.3 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS06415 -1.4 -7.7 sigma-54 dependent transcriptional regulator compare
ABID97_RS17265 -1.4 -2.3 two-component system response regulator OmpR compare
ABID97_RS10560 -1.4 -4.3 3-hydroxyacyl-CoA dehydrogenase compare
ABID97_RS08240 -1.4 -2.0 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS14115 -1.4 -3.7 dihydrolipoyl dehydrogenase compare
ABID97_RS13765 -1.4 -1.9 phage regulatory CII family protein compare
ABID97_RS07380 -1.4 -4.7 S41 family peptidase compare
ABID97_RS14625 -1.3 -5.4 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS01825 -1.3 -9.2 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS08220 -1.3 -7.3 phosphoenolpyruvate carboxylase compare
ABID97_RS24045 -1.3 -3.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS25115 -1.3 -5.7 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABID97_RS23645 -1.3 -2.0 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS12140 -1.3 -5.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS08360 -1.3 -4.1 DUF4845 domain-containing protein compare
ABID97_RS20265 -1.3 -1.8 site-specific tyrosine recombinase XerD compare
ABID97_RS25015 -1.3 -3.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS24690 -1.3 -6.0 methyl-accepting chemotaxis protein compare
ABID97_RS23270 -1.3 -6.1 pilus assembly protein PilP compare
ABID97_RS06175 -1.3 -9.4 STAS domain-containing protein compare
ABID97_RS28740 -1.3 -3.0 NADH:flavin oxidoreductase/NADH oxidase compare
ABID97_RS13245 -1.3 -1.0 XRE family transcriptional regulator compare
ABID97_RS23485 -1.2 -2.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS06600 -1.2 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS23650 -1.2 -9.3 serine/threonine-protein kinase compare
ABID97_RS13950 -1.2 -6.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS10885 -1.2 -2.6 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS03915 -1.2 -4.5 DUF4124 domain-containing protein compare
ABID97_RS23380 -1.2 -8.3 lytic transglycosylase domain-containing protein compare
ABID97_RS15995 -1.2 -3.7 PilZ domain-containing protein compare
ABID97_RS17895 -1.2 -4.9 transcriptional regulator NrdR compare
ABID97_RS19375 -1.2 -3.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS13990 -1.2 -3.2 amino acid aminotransferase compare
ABID97_RS03415 -1.2 -1.8 histidine utilization repressor compare
ABID97_RS23275 -1.2 -6.5 type 4a pilus biogenesis protein PilO compare
ABID97_RS18620 -1.2 -2.0 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein compare
ABID97_RS18505 -1.2 -1.1 transglutaminase family protein compare
ABID97_RS08250 -1.2 -4.6 RluA family pseudouridine synthase compare
ABID97_RS25405 -1.1 -5.8 16S ribosomal RNA compare
ABID97_RS11545 -1.1 -0.9 branched-chain amino acid ABC transporter permease compare
ABID97_RS18205 -1.1 -2.1 XRE family transcriptional regulator compare
ABID97_RS00585 -1.1 -7.1 TlpA disulfide reductase family protein compare
ABID97_RS08350 -1.1 -7.5 translation elongation factor 4 compare
ABID97_RS23940 -1.1 -3.1 cytochrome c oxidase subunit 3 compare
ABID97_RS10705 -1.1 -3.3 H-NS histone family protein compare
ABID97_RS17595 -1.1 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS29215 -1.1 -1.0 LysR family transcriptional regulator compare
ABID97_RS08200 -1.1 -5.1 LytTR family DNA-binding domain-containing protein compare
ABID97_RS27535 -1.1 -1.4 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS16695 -1.1 -6.6 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS22800 -1.1 -1.6 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABID97_RS16785 -1.1 -2.0 transporter compare
ABID97_RS13450 -1.1 -2.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS02460 -1.1 -7.1 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS17425 -1.0 -6.5 TonB-dependent receptor compare
ABID97_RS23280 -1.0 -4.1 PilN domain-containing protein compare
ABID97_RS19955 -1.0 -1.3 glycerol-3-phosphate dehydrogenase compare
ABID97_RS02210 -1.0 -5.2 pilin compare
ABID97_RS24095 -1.0 -1.5 Crp/Fnr family transcriptional regulator compare
ABID97_RS17270 -1.0 -4.1 ATP-binding protein compare
ABID97_RS14575 -1.0 -6.8 polyphosphate kinase 1 compare
ABID97_RS27235 -1.0 -1.1 hypothetical protein compare
ABID97_RS03015 -1.0 -1.3 hotdog fold thioesterase compare
ABID97_RS13865 -1.0 -2.6 hypothetical protein compare
ABID97_RS13945 -1.0 -5.2 acyl-CoA carboxylase subunit beta compare
ABID97_RS08365 -1.0 -1.6 ribonuclease III compare
ABID97_RS07260 -1.0 -3.9 TIM44-like domain-containing protein compare
ABID97_RS12415 -1.0 -7.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS02200 -1.0 -8.0 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS06160 -1.0 -4.1 GTP-binding protein compare
ABID97_RS10720 -1.0 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS17085 -1.0 -1.5 ORF6N domain-containing protein compare
ABID97_RS10355 -1.0 -4.3 FadR/GntR family transcriptional regulator compare
ABID97_RS23185 -1.0 -1.0 ABC transporter ATP-binding protein compare
ABID97_RS21645 -1.0 -1.1 SPOR domain-containing protein compare
ABID97_RS19715 -1.0 -2.1 shikimate dehydrogenase compare
ABID97_RS14850 -1.0 -2.2 P-II family nitrogen regulator compare
ABID97_RS06180 -1.0 -2.7 ATP-dependent protease subunit HslV compare
ABID97_RS07640 -1.0 -5.3 ubiquinol oxidase subunit II compare
ABID97_RS02275 -1.0 -4.0 recombinase RecA compare
ABID97_RS17200 -0.9 -7.0 ribonuclease R compare
ABID97_RS04030 -0.9 -1.3 FAD-binding oxidoreductase compare
ABID97_RS17250 -0.9 -4.8 3-hydroxybutyrate dehydrogenase compare
ABID97_RS17970 -0.9 -2.6 protein TolQ compare
ABID97_RS14975 -0.9 -2.1 hypothetical protein compare
ABID97_RS08245 -0.9 -1.0 Rne/Rng family ribonuclease compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source casamino acids in Variovorax sp. OAS795

For carbon source casamino acids across organisms