Experiment set2IT047 for Pseudomonas sp. RS175

Compare to:

Choline carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04131 -5.8 -8.2 Sarcosine oxidase subunit gamma compare
PFR28_02824 -5.7 -7.8 3-isopropylmalate dehydratase large subunit compare
PFR28_05244 -5.6 -19.7 Copper-exporting P-type ATPase compare
PFR28_04133 -5.6 -10.0 Sarcosine oxidase subunit delta compare
PFR28_04985 -5.1 -5.0 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04161 -4.6 -10.1 HTH-type transcriptional regulator CdhR compare
PFR28_04140 -4.5 -12.2 Carnitine monooxygenase oxygenase subunit compare
PFR28_04147 -4.5 -13.2 putative N-methylproline demethylase compare
PFR28_04149 -4.4 -8.7 hypothetical protein compare
PFR28_04148 -4.3 -9.9 hypothetical protein compare
PFR28_04145 -4.3 -6.4 Protein FixB compare
PFR28_04144 -4.2 -5.7 hypothetical protein compare
PFR28_04832 -4.2 -13.8 putative phosphatase compare
PFR28_04134 -4.2 -10.2 Sarcosine oxidase subunit beta compare
PFR28_04164 -4.0 -8.7 Glycine betaine transport system permease protein OpuAB compare
PFR28_02811 -3.9 -8.7 Amidophosphoribosyltransferase compare
PFR28_03697 -3.9 -13.8 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04929 -3.9 -6.8 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04132 -3.8 -19.6 Sarcosine oxidase subunit alpha compare
PFR28_04146 -3.8 -9.0 hypothetical protein compare
PFR28_04168 -3.8 -14.0 Oxygen-dependent choline dehydrogenase compare
PFR28_04139 -3.8 -8.8 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_02821 -3.7 -14.8 3-isopropylmalate dehydrogenase compare
PFR28_04165 -3.7 -9.0 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_03217 -3.7 -2.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_03699 -3.6 -10.9 Acetolactate synthase isozyme 3 large subunit compare
PFR28_04135 -3.6 -8.9 Serine hydroxymethyltransferase compare
PFR28_01366 -3.6 -10.2 Sulfite reductase [ferredoxin] compare
PFR28_00187 -3.6 -11.8 Histidinol dehydrogenase compare
PFR28_03714 -3.6 -11.8 RNA polymerase-binding transcription factor DksA compare
PFR28_01365 -3.6 -6.9 hypothetical protein compare
PFR28_03296 -3.5 -1.4 hypothetical protein compare
PFR28_04932 -3.5 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_03363 -3.5 -14.1 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04167 -3.5 -10.9 NAD/NADP-dependent betaine aldehyde dehydrogenase compare
PFR28_04933 -3.5 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_05015 -3.4 -19.2 Glutamate synthase [NADPH] large chain compare
PFR28_02603 -3.4 -8.4 Siroheme synthase compare
PFR28_02810 -3.4 -12.0 O-succinylhomoserine sulfhydrylase compare
PFR28_04246 -3.4 -8.9 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_03718 -3.4 -6.1 Transcriptional regulatory protein ZraR compare
PFR28_04834 -3.4 -13.1 L-threonine dehydratase biosynthetic IlvA compare
PFR28_05016 -3.4 -12.1 Glutamate synthase [NADPH] small chain compare
PFR28_00305 -3.4 -9.2 2-isopropylmalate synthase compare
PFR28_03282 -3.3 -10.6 Arginine N-succinyltransferase subunit alpha compare
PFR28_04202 -3.3 -8.8 5,10-methylenetetrahydrofolate reductase compare
PFR28_01119 -3.3 -5.3 Beta-hexosaminidase compare
PFR28_04278 -3.2 -10.7 Dihydroxy-acid dehydratase compare
PFR28_04163 -3.2 -11.0 hypothetical protein compare
PFR28_04245 -3.2 -11.9 Homoserine O-succinyltransferase compare
PFR28_04930 -3.1 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_00403 -3.1 -6.6 Regulator of sigma-E protease RseP compare
PFR28_01930 -3.0 -4.1 HTH-type transcriptional regulator McbR compare
PFR28_04986 -2.9 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_00186 -2.9 -4.8 ATP phosphoribosyltransferase compare
PFR28_03698 -2.9 -10.0 Acetolactate synthase isozyme 3 small subunit compare
PFR28_02823 -2.9 -2.3 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_05125 -2.7 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04425 -2.7 -9.6 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_04902 -2.6 -7.5 Inner membrane protein YgaZ compare
PFR28_02232 -2.6 -1.5 hypothetical protein compare
PFR28_03202 -2.5 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_04308 -2.5 -3.7 Amino-acid acetyltransferase compare
PFR28_05071 -2.5 -5.8 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03223 -2.5 -11.9 GTP pyrophosphokinase compare
PFR28_03549 -2.5 -2.1 Molybdopterin synthase catalytic subunit compare
PFR28_00188 -2.4 -7.5 Histidinol-phosphate aminotransferase compare
PFR28_04865 -2.4 -7.4 Glutamate--cysteine ligase compare
PFR28_01113 -2.2 -4.1 DNA topoisomerase 1 compare
PFR28_04903 -2.2 -6.1 hypothetical protein compare
PFR28_05212 -2.2 -8.7 Sensor histidine kinase RcsC compare
PFR28_00787 -2.1 -3.4 hypothetical protein compare
PFR28_04565 -2.1 -10.8 Protein RarD compare
PFR28_04103 -2.1 -7.5 Biotin synthase compare
PFR28_04072 -2.1 -3.4 Bifunctional folate synthesis protein compare
PFR28_03191 -2.0 -1.3 hypothetical protein compare
PFR28_00968 -2.0 -1.7 hypothetical protein compare
PFR28_01142 -1.9 -11.3 Transaldolase compare
PFR28_05078 -1.9 -3.0 hypothetical protein compare
PFR28_00688 -1.9 -1.6 hypothetical protein compare
PFR28_03420 -1.8 -4.7 hypothetical protein compare
PFR28_04721 -1.8 -1.9 hypothetical protein compare
PFR28_04519 -1.8 -5.6 HTH-type transcriptional activator CmpR compare
PFR28_04380 -1.7 -2.1 Transcriptional regulator SutA compare
PFR28_03000 -1.7 -5.6 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_04344 -1.7 -3.2 Exopolyphosphatase compare
PFR28_01156 -1.7 -5.8 hypothetical protein compare
PFR28_03151 -1.7 -2.1 Septum site-determining protein MinC compare
PFR28_04517 -1.7 -8.5 Oxaloacetate decarboxylase alpha chain compare
PFR28_02613 -1.7 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_04325 -1.7 -3.6 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_02705 -1.6 -1.6 hypothetical protein compare
PFR28_04944 -1.6 -3.8 DNA-binding transcriptional regulator NtrC compare
PFR28_03716 -1.6 -4.5 hypothetical protein compare
PFR28_03721 -1.6 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_03664 -1.6 -2.9 Ribosome-binding ATPase YchF compare
PFR28_03860 -1.6 -3.7 putative murein peptide carboxypeptidase compare
PFR28_03530 -1.6 -1.7 hypothetical protein compare
PFR28_01083 -1.6 -5.5 putative copper-importing P-type ATPase A compare
PFR28_00873 -1.6 -4.7 hypothetical protein compare
PFR28_04518 -1.6 -7.3 2-oxoglutarate carboxylase small subunit compare
PFR28_01003 -1.6 -2.6 hypothetical protein compare
PFR28_04162 -1.5 -7.6 L-serine dehydratase TdcG compare
PFR28_03388 -1.5 -7.8 Quinolinate synthase A compare
PFR28_05204 -1.5 -2.0 Sulfite reductase [ferredoxin] compare
PFR28_03902 -1.5 -1.0 hypothetical protein compare
PFR28_01004 -1.5 -5.1 Molybdenum cofactor guanylyltransferase compare
PFR28_01773 -1.5 -1.7 hypothetical protein compare
PFR28_04992 -1.5 -0.9 hypothetical protein compare
PFR28_01553 -1.5 -4.1 hypothetical protein compare
PFR28_00193 -1.5 -6.4 Sulfate adenylyltransferase subunit 2 compare
PFR28_00425 -1.4 -8.1 Protein-L-isoaspartate O-methyltransferase compare
PFR28_03169 -1.4 -7.3 Tail-specific protease compare
PFR28_03136 -1.4 -2.7 hypothetical protein compare
PFR28_01876 -1.4 -1.3 hypothetical protein compare
PFR28_03414 -1.4 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04782 -1.4 -7.6 hypothetical protein compare
PFR28_01265 -1.4 -4.9 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_04584 -1.4 -4.1 putative chromosome-partitioning protein ParB compare
PFR28_04830 -1.4 -6.4 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00966 -1.3 -7.8 HTH-type transcriptional regulator CysB compare
PFR28_01410 -1.3 -6.8 Response regulator GacA compare
PFR28_04071 -1.3 -1.0 Multifunctional CCA protein compare
PFR28_03281 -1.3 -3.7 Arginine N-succinyltransferase subunit beta compare
PFR28_01749 -1.3 -1.5 hypothetical protein compare
PFR28_00098 -1.3 -4.9 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03653 -1.3 -1.7 Molybdopterin-synthase adenylyltransferase compare
PFR28_05070 -1.3 -1.4 nebramycin 5 compare
PFR28_05205 -1.3 -3.3 Precorrin-8X methylmutase compare
PFR28_00068 -1.3 -0.8 hypothetical protein compare
PFR28_02127 -1.3 -1.4 hypothetical protein compare
PFR28_02484 -1.3 -6.8 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_00853 -1.3 -5.1 Chemotaxis protein CheY compare
PFR28_04485 -1.2 -1.5 Phosphate-specific transport system accessory protein PhoU compare
PFR28_00271 -1.2 -3.0 hypothetical protein compare
PFR28_00194 -1.2 -5.4 Bifunctional enzyme CysN/CysC compare
PFR28_00267 -1.2 -2.5 Protein rof compare
PFR28_04585 -1.2 -4.3 Chromosome partitioning protein ParA compare
PFR28_01114 -1.2 -3.1 hypothetical protein compare
PFR28_04945 -1.2 -4.0 Sensory histidine kinase/phosphatase NtrB compare
PFR28_03427 -1.2 -4.6 Sensor histidine kinase RcsC compare
PFR28_04059 -1.2 -6.8 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_04113 -1.2 -2.0 DNA polymerase III PolC-type compare
PFR28_01884 -1.2 -2.3 putative enoyl-CoA hydratase echA8 compare
PFR28_04882 -1.2 -5.4 Sulfur carrier protein FdhD compare
PFR28_02785 -1.2 -1.8 hypothetical protein compare
PFR28_01362 -1.2 -1.4 hypothetical protein compare
PFR28_03369 -1.1 -4.5 Glycerol-3-phosphate regulon repressor compare
PFR28_05062 -1.1 -6.0 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_02496 -1.1 -4.3 Molybdate-binding protein ModA compare
PFR28_00472 -1.1 -2.1 Protein RecA compare
PFR28_03596 -1.1 -1.3 Transcriptional regulator MraZ compare
PFR28_00196 -1.1 -3.7 Phosphate acetyltransferase compare
PFR28_04623 -1.1 -2.9 hypothetical protein compare
PFR28_04998 -1.1 -2.5 ATP-dependent protease ATPase subunit HslU compare
PFR28_01358 -1.1 -1.3 hypothetical protein compare
PFR28_04222 -1.1 -3.0 '2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase' transl_table=11 compare
PFR28_04030 -1.1 -7.0 hypothetical protein compare
PFR28_00851 -1.1 -1.2 Flagellum site-determining protein YlxH compare
PFR28_01060 -1.1 -3.7 HTH-type transcriptional repressor NanR compare
PFR28_01427 -1.1 -2.6 hypothetical protein compare
PFR28_02497 -1.1 -5.8 Molybdenum transport system permease protein ModB compare
PFR28_05067 -1.1 -1.6 hypothetical protein compare
PFR28_01154 -1.1 -2.1 hypothetical protein compare
PFR28_00844 -1.0 -1.1 hypothetical protein compare
PFR28_01263 -1.0 -3.2 HTH-type transcriptional regulator CueR compare
PFR28_00420 -1.0 -4.7 S-(hydroxymethyl)glutathione dehydrogenase compare
PFR28_04031 -1.0 -7.1 Anhydro-N-acetylmuramic acid kinase compare
PFR28_00876 -1.0 -2.1 hypothetical protein compare
PFR28_03227 -1.0 -6.1 Signal transduction histidine-protein kinase BarA compare
PFR28_03255 -1.0 -6.6 Chemotaxis protein methyltransferase Cher2 compare
PFR28_04060 -1.0 -6.0 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_01388 -1.0 -2.3 HTH-type transcriptional regulator XynR compare
PFR28_04166 -1.0 -2.2 HTH-type transcriptional regulator BetI compare
PFR28_01460 -1.0 -0.8 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03883 -1.0 -4.4 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_03513 -1.0 -1.6 hypothetical protein compare
PFR28_01110 -1.0 -2.6 Fatty acid oxidation complex subunit alpha compare
PFR28_01258 -1.0 -2.5 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
PFR28_01616 -1.0 -0.8 HTH-type transcriptional regulator YofA compare
PFR28_02452 -1.0 -2.8 FK506-binding protein compare
PFR28_04100 -1.0 -3.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_01005 -1.0 -3.1 Molybdenum cofactor biosynthesis protein B compare
PFR28_02969 -1.0 -2.1 hypothetical protein compare
PFR28_03413 -1.0 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00325 -1.0 -2.0 Inner membrane protein YpjD compare
PFR28_01836 -1.0 -2.4 Transcriptional regulator SlyA compare
PFR28_02201 -1.0 -1.3 Chaperone SurA compare
PFR28_04069 -0.9 -6.6 hypothetical protein compare
PFR28_00855 -0.9 -3.9 hypothetical protein compare
PFR28_00988 -0.9 -5.0 Sensor histidine kinase RcsC compare
PFR28_04521 -0.9 -2.8 HTH-type transcriptional regulator HexR compare
PFR28_04102 -0.9 -3.9 8-amino-7-oxononanoate synthase compare
PFR28_04931 -0.9 -2.3 hypothetical protein compare
PFR28_02838 -0.9 -5.1 Aromatic-amino-acid aminotransferase compare
PFR28_04936 -0.9 -2.1 Carboxy-terminal processing protease CtpB compare
PFR28_01578 -0.9 -2.0 HTH-type transcriptional regulator LutR compare
PFR28_03204 -0.9 -3.4 Cobyric acid synthase compare
PFR28_04068 -0.9 -6.2 hypothetical protein compare
PFR28_01855 -0.9 -0.7 Hypoxic response protein 1 compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Choline in Pseudomonas sp. RS175

For carbon source Choline across organisms