Experiment set2IT047 for Agrobacterium fabrum C58

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -8.7 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2791 -7.7 -5.3 3-isopropylmalate dehydrogenase compare
Atu3754 -7.6 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0432 -7.2 -7.1 O-succinylhomoserine sulfhydrylase compare
Atu3138 -7.2 -11.0 hypothetical protein compare
Atu1687 -7.1 -9.8 anthranilate phosphoribosyltransferase compare
Atu2709 -6.9 -15.5 3-isopropylmalate dehydratase, large subunit compare
Atu3219 -6.6 -14.2 dihydroxy-acid dehydratase compare
Atu0679 -6.6 -4.6 ATP phosphoribosyltransferase compare
Atu2289 -6.6 -16.5 anthranilate synthase component I and II compare
Atu2036 -6.5 -13.3 acetolactate synthase III, large subunit compare
Atu1205 -6.4 -12.4 threonine dehydratase compare
Atu0038 -6.4 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0099 -6.4 -8.8 prephenate dehydratase compare
Atu1140 -6.3 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2264 -6.3 -13.4 2-isopropylmalate synthase compare
Atu3740 -6.1 -11.0 fructose bisphosphate aldolase compare
Atu1686 -6.1 -18.5 peptidyl-prolyl cis-trans isomerse D compare
Atu1588 -6.1 -10.2 homoserine dehydrogenase compare
Atu3707 -6.0 -4.2 phosphoserine aminotransferase compare
Atu0537 -6.0 -4.1 histidinol dehydrogenase compare
Atu1688 -6.0 -4.1 indole-3-glycerol-phosphate synthase compare
Atu1141 -5.9 -6.4 Phosphoribosylglycinamide synthetase compare
Atu1075 -5.9 -7.0 amidophosphoribosyltransferase compare
Atu0298 -5.8 -8.0 orotidine 5 compare
Atu1307 -5.8 -8.0 dihydroorotase compare
Atu1308 -5.8 -7.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1620 -5.8 -12.4 triosephosphate isomerase compare
Atu3706 -5.8 -9.6 D-3-phosphoglycerate dehydrogenase compare
Atu0017 -5.7 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0486 -5.6 -6.7 dihydroorotate dehydrogenase compare
Atu1844 -5.6 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu3140 -5.5 -10.6 5-dehydro-4-deoxyglucarate dehydratase conserved
Atu3143 -5.5 -14.6 hypothetical protein conserved
Atu2718 -5.5 -9.1 homoserine O-succinyltransferase compare
Atu3139 -5.5 -13.7 hypothetical protein compare
Atu0399 -5.4 -6.5 dihydroorotase compare
Atu3885 -5.4 -9.8 inositol monophosphatase compare
Atu3482 -5.4 -10.0 pantoate--beta-alanine ligase compare
Atu4541 -5.4 -9.0 carboxymuconolactone decarboxylase compare
Atu3783 -5.3 -18.3 glutamate synthase subunit beta compare
Atu0678 -5.3 -5.2 histidyl-tRNA synthetase compare
Atu1850 -5.3 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2040 -5.2 -7.2 phosphoserine phosphatase compare
Atu2790 -5.1 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu0035 -5.1 -11.3 phosphoenolpyruvate carboxykinase compare
Atu2650 -5.1 -13.7 glycerol-3-phosphate dehydrogenase compare
Atu1456 -5.1 -10.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1845 -5.1 -6.9 phosphoribosylformylglycinamidine synthase I compare
Atu3135 -4.9 -15.9 ABC transporter permease conserved
Atu3137 -4.9 -11.8 C4-dicarboxylate-binding protein conserved
Atu2015 -4.9 -15.1 aminotransferase compare
Atu0043 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu1685 -4.8 -2.0 hypothetical protein compare
Atu1359 -4.8 -2.0 dnaK deletion suppressor protein compare
Atu3469 -4.8 -3.3 phosphoglyceromutase compare
Atu2237 -4.8 -7.9 cytochrome c1 compare
Atu3739 -4.8 -4.0 phosphoglycerate kinase compare
Atu3755 -4.7 -7.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2747 -4.7 -13.8 hypothetical protein compare
Atu0041 -4.7 -3.2 glutamine amidotransferase compare
Atu4098 -4.7 -14.3 quinolinate synthetase compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu3784 -4.6 -28.5 glutamate synthase large subunit compare
Atu0647 -4.6 -7.1 phosphoribosylamine--glycine ligase compare
Atu1454 -4.6 -10.5 siroheme synthase compare
Atu4505 -4.6 -11.1 LacI family transcriptional regulator compare
Atu4096 -4.6 -14.4 nicotinate-nucleotide pyrophosphorylase compare
Atu1030 -4.5 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1589 -4.4 -10.6 aminotransferase, class I compare
Atu3136 -4.3 -6.5 ABC transporter permease conserved
Atu2155 -4.3 -21.8 methionine synthase compare
Atu0030 -4.3 -2.6 phosphocarrier protein HPr compare
Atu4711 -4.3 -9.9 two component sensor kinase compare
Atu4232 -4.3 -9.9 GntR family transcriptional regulator compare
Atu4773 -4.3 -2.2 two component response regulator compare
Atu1904 -4.1 -9.7 transcriptional regulator compare
Atu0062 -4.1 -11.0 transcriptional regulator, ROK family compare
Atu4097 -4.0 -14.6 L-aspartate oxidase compare
Atu4317 -3.9 -5.1 TetR family transcriptional regulator compare
Atu4446 -3.8 -13.2 hypothetical protein compare
Atu0368 -3.8 -6.9 tRNA pseudouridine synthase I compare
Atu0400 -3.8 -5.3 orotate phosphoribosyltransferase compare
Atu3908 -3.8 -13.8 GntR family transcriptional regulator compare
Atu0912 -3.8 -2.1 Na+/H+ antiporter compare
Atu3731 -3.8 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu3461 -3.8 -4.4 GntR family transcriptional regulator compare
Atu4514 -3.7 -6.7 RpiR family transcriptional regulator compare
Atu2239 -3.7 -4.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0331 -3.6 -4.2 sigma-54 modulation protein compare
Atu2238 -3.6 -8.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2200 -3.6 -5.3 cold shock protein compare
Atu3483 -3.6 -9.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu6098 -3.5 -1.5 transcriptional regulator, HTH family compare
Atu0590 -3.5 -12.7 transcriptional regulator repressor compare
Atu1748 -3.4 -11.3 NIFU-like protein compare
Atu1455 -3.4 -5.3 hypothetical protein compare
Atu0768 -3.4 -15.9 cytochrome-c oxidase chain I compare
Atu4364 -3.4 -12.7 LacI family transcriptional regulator compare
Atu3337 -3.3 -13.5 LacI family transcriptional regulator compare
Atu2035 -3.2 -12.3 acetolactate synthase, small subunit compare
Atu3162 -3.2 -11.2 LacI family transcriptional regulator compare
Atu1286 -3.2 -5.4 hypothetical protein compare
Atu0322 -3.0 -8.4 enoyl CoA hydratase compare
Atu3343 -3.0 -9.7 trehalose utilization-like protein compare
Atu2684 -2.9 -3.2 hypothetical protein compare
Atu0981 -2.8 -8.7 glutamate-ammonia-ligase adenylyltransferase compare
Atu2532 -2.8 -5.2 transcriptional regulator, MarR family compare
Atu0770 -2.8 -8.0 cytochrome C oxidase assembly protein compare
Atu0040 -2.7 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0641 -2.7 -5.2 hypothetical protein compare
Atu0101 -2.7 -5.8 cytochrome c compare
Atu1242 -2.7 -12.3 cytochrome oxidase assembly factor compare
Atu0029 -2.7 -7.1 S-adenosylhomocysteine hydrolase compare
Atu0767 -2.7 -6.2 cytochrome c oxidase subunit II compare
Atu2115 -2.7 -11.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1074 -2.6 -13.4 NAD/NADP dependent oxidoreductase compare
Atu0769 -2.6 -2.9 protoheme IX farnesyltransferase compare
Atu4685 -2.6 -11.2 LacI family transcriptional regulator compare
Atu4743 -2.6 -9.5 LacI family transcriptional regulator compare
Atu2209 -2.6 -5.6 pyrroline-5-carboxylate reductase compare
Atu2831 -2.5 -7.5 glucose inhibited division protein A compare
Atu0703 -2.5 -4.7 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2832 -2.5 -6.1 tRNA modification GTPase compare
Atu2726 -2.5 -17.1 pyruvate carboxylase compare
Atu3342 -2.4 -7.2 trehalose utilization-like protein compare
Atu0031 -2.4 -2.2 PTS system, IIA component compare
Atu1457 -2.3 -2.7 hypothetical protein compare
Atu0771 -2.3 -8.5 cytochrome c oxidase subunit III compare
Atu2569 -2.2 -14.5 thiamine biosynthesis protein compare
Atu4674 -2.2 -11.0 GntR family transcriptional regulator compare
Atu3912 -2.2 -8.3 hypothetical protein compare
Atu4451 -2.2 -11.3 mannitol 2-dehydrogenase compare
Atu3290 -2.1 -7.7 phosphomethylpyrimidine kinase compare
Atu2821 -2.1 -5.8 transcriptional regulator, GntR family compare
Atu3613 -2.1 -6.4 hypothetical protein compare
Atu3598 -2.1 -3.4 thiol:disulfide interchange protein compare
Atu6114 -2.1 -2.5 hypothetical protein compare
Atu2123 -2.0 -5.2 methylenetetrahydrofolate reductase compare
Atu0977 -2.0 -3.3 serine protease DO-like protease compare
Atu0434 -2.0 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3289 -2.0 -4.5 thiamine-phosphate pyrophosphorylase compare
Atu2548 -2.0 -11.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4194 -2.0 -11.9 oligopeptide ABC transporter permease compare
Atu1327 -2.0 -3.6 NADH-ubiquinone oxidoreductase compare
Atu2800 -1.9 -3.9 precorrin-3B C17-methyltransferase compare
Atu0535 -1.9 -5.3 hypothetical protein compare
Atu1285 -1.8 -9.0 metal dependent hydrolase compare
Atu2801 -1.8 -3.7 precorrin-2 C20 methyltransferase compare
Atu3288 -1.8 -8.7 hydroxyethylthiazole kinase compare
Atu2808 -1.8 -8.9 cobyric acid synthase compare
Atu4824 -1.8 -9.4 IclR family transcriptional regulator compare
Atu1770 -1.8 -10.9 glutamine synthetase compare
Atu3142 -1.8 -10.8 5-keto-4-deoxyuronate isomerase compare
Atu3141 -1.8 -10.4 2-deoxy-D-gluconate 3-dehydrogenase compare
Atu3971 -1.8 -12.5 dihydroxy-acid dehydratase compare
Atu1542 -1.7 -7.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4195 -1.7 -12.9 oligopeptide ABC transporter ATPase compare
Atu3913 -1.7 -5.7 biotin carboxylase compare
Atu3356 -1.7 -13.5 malic enzyme compare
Atu5075 -1.7 -7.1 GntR family transcriptional regulator compare
Atu0401 -1.7 -5.4 fructokinase compare
Atu1462 -1.7 -10.4 glycine cleavage system protein P2 compare
Atu3910 -1.7 -6.6 LamB/YcsF family protein compare
Atu1464 -1.6 -6.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu4193 -1.6 -8.2 oligopeptide ABC transporter permease compare
Atu0663 -1.6 -10.1 hypothetical protein compare
Atu4599 -1.6 -10.7 IclR family transcriptional regulator compare
Atu2207 -1.6 -3.4 two component sensor kinase compare
Atu3147 -1.6 -10.0 oxidoreductase compare
Atu2798 -1.6 -4.0 precorrin-6y methyltransferase compare
Atu2805 -1.5 -6.6 cobalamin synthesis protein compare
Atu2205 -1.5 -3.4 transcriptional regulator, MarR family compare
Atu2809 -1.5 -8.3 cobalamin biosynthesis protein compare
Atu4192 -1.5 -11.4 oligopeptide ABC transporter substrate-binding protein compare
Atu1463 -1.5 -5.2 glycine cleavage system component H compare
Atu0536 -1.5 -7.1 hypothetical protein compare
Atu3997 -1.5 -10.2 biotin synthetase compare
Atu0846 -1.5 -4.3 transcriptional regulator, MarR family compare
Atu3453 -1.5 -5.1 isomerase/lactonizing enzyme compare
Atu2804 -1.5 -10.9 cobaltochelatase subunit compare
Atu2793 -1.5 -4.5 cobyrinic acid a,c-diamide synthase compare
Atu2803 -1.5 -4.4 Cobalamin biosynthesis associated protein compare
Atu4077 -1.5 -8.1 glycogen branching protein compare
Atu2799 -1.4 -4.5 precorrin-6x reductase compare
Atu0803 -1.4 -10.5 pyruvate,orthophosphate dikinase compare
Atu1891 -1.4 -4.6 cobalamin biosynthesis protein compare
Atu0723 -1.4 -2.0 FAD dependent oxidoreductase compare
Atu4825 -1.4 -5.2 dehydrogenase compare
Atu2795 -1.4 -6.5 cobalamin biosynthetic protein compare
Atu2807 -1.4 -6.4 cob(I)alamin adenosyltransferase compare
Atu2796 -1.4 -6.0 precorrin-4 C11-methyltransferase compare
Atu2802 -1.3 -7.1 precorrin-8X methylmutase compare
Atu3075 -1.3 -5.8 TetR family transcriptional regulator compare
Atu1445 -1.3 -4.9 two component sensor kinase compare
Atu3999 -1.3 -3.1 dithiobiotin synthetase compare
Atu8115 -1.3 -3.5 Hypothetical Protein compare
Atu0188 -1.3 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu1705 -1.3 -2.9 SEC-independent protein translocase protein compare
Atu4576 -1.3 -6.9 ROK family transcriptional regulator compare


Specific Phenotypes

For 59 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Agrobacterium fabrum C58

For carbon source D-Galacturonic Acid monohydrate across organisms