Experiment set2IT046 for Variovorax sp. OAS795

Compare to:

L-Fucose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS22620 -5.8 -7.8 response regulator transcription factor compare
ABID97_RS17265 -5.6 -4.3 two-component system response regulator OmpR compare
ABID97_RS22625 -5.3 -10.4 HAMP domain-containing sensor histidine kinase compare
ABID97_RS26160 -4.6 -1.7 nuclear transport factor 2 family protein compare
ABID97_RS23220 -3.9 -1.9 glutamate synthase subunit beta compare
ABID97_RS23225 -3.9 -16.5 glutamate synthase-related protein compare
ABID97_RS25015 -3.8 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS12180 -3.6 -2.5 hypothetical protein compare
ABID97_RS02455 -3.5 -3.2 nucleotidyltransferase family protein compare
ABID97_RS05250 -3.4 -8.8 anthranilate synthase component I compare
ABID97_RS01565 -3.4 -8.5 DNA starvation/stationary phase protection protein compare
ABID97_RS14090 -3.3 -1.7 response regulator transcription factor compare
ABID97_RS06345 -3.0 -4.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS09180 -3.0 -5.8 DNA polymerase I compare
ABID97_RS17360 -3.0 -2.7 alpha/beta hydrolase compare
ABID97_RS16470 -3.0 -2.0 translational GTPase TypA compare
ABID97_RS13860 -2.9 -4.5 hypothetical protein compare
ABID97_RS05260 -2.8 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS06575 -2.7 -6.8 trehalose-phosphatase compare
ABID97_RS08220 -2.6 -10.1 phosphoenolpyruvate carboxylase compare
ABID97_RS16910 -2.6 -7.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS04500 -2.5 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS10920 -2.5 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS15665 -2.5 -8.3 [protein-PII] uridylyltransferase compare
ABID97_RS01200 -2.5 -1.8 L-idonate 5-dehydrogenase compare
ABID97_RS04760 -2.4 -2.3 SPOR domain-containing protein compare
ABID97_RS20905 -2.4 -1.9 hypothetical protein compare
ABID97_RS17600 -2.4 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS13245 -2.4 -1.3 XRE family transcriptional regulator compare
ABID97_RS06520 -2.3 -1.6 SAM-dependent methyltransferase compare
ABID97_RS09490 -2.3 -1.6 LapA family protein compare
ABID97_RS20520 -2.3 -2.0 polyribonucleotide nucleotidyltransferase compare
ABID97_RS21150 -2.3 -8.9 FAD-dependent oxidoreductase compare
ABID97_RS05765 -2.3 -3.1 UDP-glucose 4-epimerase GalE compare
ABID97_RS17270 -2.2 -6.9 ATP-binding protein compare
ABID97_RS24170 -2.2 -5.5 ATP-binding protein compare
ABID97_RS16600 -2.2 -6.6 CysB family HTH-type transcriptional regulator compare
ABID97_RS27635 -2.1 -1.1 NAD(P)H-dependent oxidoreductase compare
ABID97_RS28635 -2.1 -5.1 IclR family transcriptional regulator compare
ABID97_RS19550 -2.1 -1.3 phosphatase PAP2 family protein compare
ABID97_RS05095 -2.0 -1.3 DUF4150 domain-containing protein compare
ABID97_RS09610 -2.0 -2.5 Cro/CI family transcriptional regulator compare
ABID97_RS14850 -2.0 -2.3 P-II family nitrogen regulator compare
ABID97_RS16535 -2.0 -5.4 arginine/lysine/ornithine decarboxylase compare
ABID97_RS21945 -2.0 -2.7 hemolysin family protein compare
ABID97_RS26295 -2.0 -1.6 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS27015 -1.9 -1.4 DoxX family protein compare
ABID97_RS24055 -1.9 -2.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS20615 -1.9 -6.6 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS08430 -1.9 -1.8 tryptophan synthase subunit beta compare
ABID97_RS28380 -1.8 -1.5 ABC transporter ATP-binding protein compare
ABID97_RS24045 -1.8 -3.1 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS08435 -1.8 -2.1 phosphoribosylanthranilate isomerase compare
ABID97_RS02600 -1.7 -5.4 homoserine O-acetyltransferase compare
ABID97_RS18580 -1.7 -1.5 CoA transferase compare
ABID97_RS05280 -1.7 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03680 -1.7 -4.7 lysophospholipid transporter LplT compare
ABID97_RS13990 -1.7 -3.8 amino acid aminotransferase compare
ABID97_RS03800 -1.7 -2.5 O-antigen ligase family protein compare
ABID97_RS06460 -1.6 -1.6 sigma 54-interacting transcriptional regulator compare
ABID97_RS06365 -1.6 -1.2 TlpA disulfide reductase family protein compare
ABID97_RS17895 -1.6 -6.2 transcriptional regulator NrdR compare
ABID97_RS00255 -1.6 -9.7 type IV pilus twitching motility protein PilT compare
ABID97_RS14095 -1.6 -6.9 PAS domain S-box protein compare
ABID97_RS19040 -1.6 -1.3 isocitrate/isopropylmalate dehydrogenase family protein compare
ABID97_RS23775 -1.6 -4.7 ABC transporter permease compare
ABID97_RS04245 -1.6 -1.6 acyl-CoA thioesterase compare
ABID97_RS02110 -1.5 -8.3 type IV pilus modification protein PilV compare
ABID97_RS15855 -1.5 -1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABID97_RS22860 -1.5 -2.1 MurR/RpiR family transcriptional regulator compare
ABID97_RS22800 -1.5 -1.6 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABID97_RS23425 -1.5 -1.5 tRNA-Pro compare
ABID97_RS18495 -1.5 -1.1 DUF2889 domain-containing protein compare
ABID97_RS02420 -1.5 -4.7 protealysin inhibitor emfourin compare
ABID97_RS05810 -1.5 -4.4 TRAP transporter small permease compare
ABID97_RS16595 -1.5 -4.3 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS13195 -1.5 -1.0 maleylacetate reductase compare
ABID97_RS28355 -1.5 -1.2 2,5-dihydroxypyridine 5,6-dioxygenase compare
ABID97_RS03110 -1.5 -4.1 helix-turn-helix transcriptional regulator compare
ABID97_RS07430 -1.5 -4.9 pantoate--beta-alanine ligase compare
ABID97_RS03125 -1.4 -5.2 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS02120 -1.4 -7.3 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS01650 -1.4 -1.4 orotidine-5'-phosphate decarboxylase compare
ABID97_RS13950 -1.4 -5.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS02115 -1.4 -6.7 PilW family protein compare
ABID97_RS16695 -1.4 -9.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS08480 -1.4 -1.6 citrate synthase compare
ABID97_RS13945 -1.4 -5.6 acyl-CoA carboxylase subunit beta compare
ABID97_RS05515 -1.4 -1.1 AEC family transporter compare
ABID97_RS10885 -1.4 -2.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS27160 -1.4 -1.8 hypothetical protein compare
ABID97_RS23645 -1.4 -1.7 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS23430 -1.3 -7.8 type IV-A pilus assembly ATPase PilB compare
ABID97_RS06450 -1.3 -2.2 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS28600 -1.3 -0.8 aspartate aminotransferase family protein compare
ABID97_RS08445 -1.3 -6.3 FimV/HubP family polar landmark protein compare
ABID97_RS22375 -1.3 -1.5 OsmC family protein compare
ABID97_RS20095 -1.3 -1.7 DNA topoisomerase IV subunit B compare
ABID97_RS05835 -1.3 -3.2 fumarylacetoacetate hydrolase family protein compare
ABID97_RS17590 -1.3 -6.4 endopeptidase La compare
ABID97_RS10705 -1.3 -1.9 H-NS histone family protein compare
ABID97_RS23320 -1.3 -4.9 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS07395 -1.3 -1.5 glutaredoxin 3 compare
ABID97_RS12140 -1.3 -6.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS07405 -1.2 -8.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS23915 -1.2 -2.7 heme o synthase compare
ABID97_RS08425 -1.2 -3.2 tryptophan synthase subunit alpha compare
ABID97_RS23440 -1.2 -6.4 A24 family peptidase compare
ABID97_RS02125 -1.2 -9.3 PilC/PilY family type IV pilus protein compare
ABID97_RS01415 -1.2 -1.6 DUF1840 domain-containing protein compare
ABID97_RS10695 -1.2 -5.7 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS09405 -1.2 -1.0 xanthine dehydrogenase family protein subunit M compare
ABID97_RS19560 -1.2 -1.9 HAMP domain-containing sensor histidine kinase compare
ABID97_RS03140 -1.2 -1.0 tRNA-Gly compare
ABID97_RS25130 -1.2 -5.7 carboxyl transferase domain-containing protein compare
ABID97_RS14625 -1.2 -2.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS24920 -1.2 -0.8 Holliday junction branch migration protein RuvA compare
ABID97_RS23325 -1.1 -3.7 cytochrome c biogenesis protein ResB compare
ABID97_RS25345 -1.1 -3.7 transporter associated domain-containing protein compare
ABID97_RS23965 -1.1 -5.8 cytochrome c oxidase subunit II compare
ABID97_RS03720 -1.1 -1.0 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS13815 -1.1 -1.7 phage major capsid protein compare
ABID97_RS10815 -1.1 -7.0 phosphoenolpyruvate synthase compare
ABID97_RS05770 -1.1 -2.5 nucleoid occlusion factor SlmA compare
ABID97_RS23435 -1.1 -6.2 type II secretion system F family protein compare
ABID97_RS05800 -1.1 -5.1 altronate dehydratase family protein conserved
ABID97_RS21205 -1.1 -4.9 IlvD/Edd family dehydratase compare
ABID97_RS13865 -1.1 -3.4 hypothetical protein compare
ABID97_RS17085 -1.1 -0.9 ORF6N domain-containing protein compare
ABID97_RS17665 -1.1 -1.2 DUF1993 domain-containing protein compare
ABID97_RS14665 -1.1 -2.4 UvrD-helicase domain-containing protein compare
ABID97_RS09830 -1.1 -0.8 hypothetical protein compare
ABID97_RS16690 -1.1 -2.5 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS16985 -1.1 -2.6 transcriptional repressor LexA compare
ABID97_RS07615 -1.1 -2.1 ATP-binding protein compare
ABID97_RS24040 -1.1 -1.4 MarR family transcriptional regulator compare
ABID97_RS23185 -1.1 -1.0 ABC transporter ATP-binding protein compare
ABID97_RS06190 -1.1 -3.3 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS02130 -1.0 -5.6 type IV pilin protein compare
ABID97_RS10355 -1.0 -3.3 FadR/GntR family transcriptional regulator compare
ABID97_RS25100 -1.0 -4.1 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS23950 -1.0 -4.6 cytochrome c oxidase assembly protein compare
ABID97_RS13570 -1.0 -3.6 IclR family transcriptional regulator compare
ABID97_RS23330 -1.0 -4.0 c-type cytochrome compare
ABID97_RS02140 -1.0 -3.2 sugar transferase compare
ABID97_RS23230 -1.0 -5.1 transposase compare
ABID97_RS04610 -1.0 -4.6 potassium transporter Kup compare
ABID97_RS17970 -1.0 -2.5 protein TolQ compare
ABID97_RS13600 -1.0 -0.9 hypothetical protein compare
ABID97_RS02460 -1.0 -6.3 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS27525 -1.0 -1.2 PadR family transcriptional regulator compare
ABID97_RS01070 -1.0 -1.5 Crp/Fnr family transcriptional regulator compare
ABID97_RS19410 -1.0 -1.8 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS16405 -1.0 -2.4 type II toxin-antitoxin system VapC family toxin compare
ABID97_RS07610 -1.0 -0.8 response regulator transcription factor compare
ABID97_RS13795 -1.0 -1.6 hypothetical protein compare
ABID97_RS01840 -1.0 -5.5 DUF1631 family protein compare
ABID97_RS15505 -1.0 -0.7 ATP-binding cassette domain-containing protein compare
ABID97_RS06415 -1.0 -5.6 sigma-54 dependent transcriptional regulator compare
ABID97_RS01825 -1.0 -6.2 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS27055 -1.0 -0.8 MFS transporter compare
ABID97_RS23275 -1.0 -4.6 type 4a pilus biogenesis protein PilO compare
ABID97_RS22705 -1.0 -5.0 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS27265 -1.0 -1.1 fumarylacetoacetate hydrolase family protein compare
ABID97_RS29150 -0.9 -1.5 maleylacetate reductase compare
ABID97_RS10690 -0.9 -3.9 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS00585 -0.9 -5.7 TlpA disulfide reductase family protein compare
ABID97_RS13430 -0.9 -1.7 3-keto-5-aminohexanoate cleavage protein compare
ABID97_RS03115 -0.9 -3.8 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS26090 -0.9 -2.3 homoserine O-acetyltransferase compare
ABID97_RS06880 -0.9 -2.2 hypothetical protein compare
ABID97_RS09595 -0.9 -1.5 Arc family DNA-binding protein compare
ABID97_RS01120 -0.9 -0.9 citrate synthase compare
ABID97_RS20810 -0.9 -1.1 hypothetical protein compare
ABID97_RS26970 -0.9 -2.0 hypothetical protein compare
ABID97_RS17640 -0.9 -1.6 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS08595 -0.9 -2.2 hypothetical protein compare
ABID97_RS14160 -0.9 -3.2 cell division protein ZapE compare
ABID97_RS18445 -0.9 -0.9 helix-turn-helix transcriptional regulator compare
ABID97_RS14985 -0.9 -0.8 hypothetical protein compare
ABID97_RS11545 -0.9 -0.7 branched-chain amino acid ABC transporter permease compare
ABID97_RS28565 -0.9 -2.1 cupin domain-containing protein compare
ABID97_RS12030 -0.9 -1.7 CheR family methyltransferase compare
ABID97_RS01755 -0.9 -3.9 pyruvate kinase compare
ABID97_RS07775 -0.9 -2.6 phosphoribosylglycinamide formyltransferase compare
ABID97_RS14700 -0.9 -1.3 recombination mediator RecR compare
ABID97_RS22940 -0.9 -2.3 single-stranded-DNA-specific exonuclease RecJ compare
ABID97_RS16065 -0.9 -0.9 PDR/VanB family oxidoreductase compare
ABID97_RS09940 -0.9 -1.9 nitrogen regulation protein NR(II) compare
ABID97_RS07850 -0.9 -3.1 ABC transporter ATP-binding protein compare
ABID97_RS12610 -0.9 -1.7 flavoprotein compare
ABID97_RS29030 -0.9 -0.9 3-isopropylmalate dehydratase small subunit compare
ABID97_RS08710 -0.9 -3.3 polynucleotide adenylyltransferase PcnB compare
ABID97_RS13450 -0.9 -1.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS17200 -0.9 -6.3 ribonuclease R compare
ABID97_RS15215 -0.9 -0.7 lysozyme compare
ABID97_RS14675 -0.9 -1.0 winged helix-turn-helix transcriptional regulator compare
ABID97_RS17225 -0.9 -4.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS05825 -0.8 -2.8 SDR family oxidoreductase compare
ABID97_RS26680 -0.8 -1.0 AAA family ATPase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Fucose in Variovorax sp. OAS795

For carbon source L-Fucose across organisms