Experiment set2IT046 for Agrobacterium fabrum C58

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -8.8 -6.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1850 -7.9 -5.4 phosphoribosylformylglycinamidine synthetase II compare
Atu0038 -7.7 -5.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1687 -7.6 -9.0 anthranilate phosphoribosyltransferase compare
Atu3219 -7.2 -9.8 dihydroxy-acid dehydratase compare
Atu3740 -7.2 -7.0 fructose bisphosphate aldolase compare
Atu2791 -7.1 -6.9 3-isopropylmalate dehydrogenase compare
Atu0099 -7.1 -8.5 prephenate dehydratase compare
Atu1588 -7.0 -6.8 homoserine dehydrogenase compare
Atu3139 -7.0 -12.6 hypothetical protein compare
Atu4541 -6.8 -6.7 carboxymuconolactone decarboxylase compare
Atu2264 -6.8 -11.4 2-isopropylmalate synthase compare
Atu2036 -6.8 -13.1 acetolactate synthase III, large subunit compare
Atu3783 -6.5 -18.3 glutamate synthase subunit beta compare
Atu3706 -6.5 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu2709 -6.4 -19.9 3-isopropylmalate dehydratase, large subunit compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu2289 -6.4 -19.0 anthranilate synthase component I and II compare
Atu1075 -6.4 -6.2 amidophosphoribosyltransferase compare
Atu0432 -6.4 -9.7 O-succinylhomoserine sulfhydrylase compare
Atu3885 -6.3 -7.5 inositol monophosphatase compare
Atu1205 -6.2 -12.0 threonine dehydratase compare
Atu3140 -6.2 -10.3 5-dehydro-4-deoxyglucarate dehydratase conserved
Atu1308 -6.0 -8.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1845 -6.0 -7.2 phosphoribosylformylglycinamidine synthase I compare
Atu0537 -6.0 -4.2 histidinol dehydrogenase compare
Atu4317 -6.0 -6.4 TetR family transcriptional regulator compare
Atu1140 -5.9 -5.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1141 -5.9 -9.0 Phosphoribosylglycinamide synthetase compare
Atu0679 -5.9 -7.0 ATP phosphoribosyltransferase compare
Atu3138 -5.8 -9.0 hypothetical protein compare
Atu1688 -5.8 -5.7 indole-3-glycerol-phosphate synthase compare
Atu3754 -5.8 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2650 -5.8 -14.8 glycerol-3-phosphate dehydrogenase compare
Atu0035 -5.7 -12.7 phosphoenolpyruvate carboxykinase compare
Atu1844 -5.6 -5.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3755 -5.6 -6.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1686 -5.6 -20.9 peptidyl-prolyl cis-trans isomerse D compare
Atu1307 -5.5 -7.5 dihydroorotase compare
Atu3739 -5.5 -3.0 phosphoglycerate kinase compare
Atu3143 -5.5 -14.0 hypothetical protein conserved
Atu2718 -5.5 -9.0 homoserine O-succinyltransferase compare
Atu0031 -5.4 -2.3 PTS system, IIA component compare
Atu0400 -5.4 -6.4 orotate phosphoribosyltransferase compare
Atu0399 -5.4 -5.3 dihydroorotase compare
Atu3482 -5.4 -11.5 pantoate--beta-alanine ligase compare
Atu3707 -5.2 -4.3 phosphoserine aminotransferase compare
Atu0486 -5.2 -7.1 dihydroorotate dehydrogenase compare
Atu2790 -5.2 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu4505 -5.2 -11.2 LacI family transcriptional regulator compare
Atu0703 -5.1 -4.5 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0678 -5.1 -6.0 histidyl-tRNA synthetase compare
Atu3137 -5.0 -12.2 C4-dicarboxylate-binding protein conserved
Atu2015 -5.0 -17.5 aminotransferase compare
Atu3135 -5.0 -13.0 ABC transporter permease conserved
Atu1620 -4.9 -13.5 triosephosphate isomerase compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu0043 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu1589 -4.9 -9.8 aminotransferase, class I compare
Atu3136 -4.9 -6.3 ABC transporter permease conserved
Atu3784 -4.9 -26.5 glutamate synthase large subunit compare
Atu1359 -4.9 -2.0 dnaK deletion suppressor protein compare
Atu0769 -4.8 -3.3 protoheme IX farnesyltransferase compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu1456 -4.8 -11.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2200 -4.7 -4.9 cold shock protein compare
Atu0039 -4.7 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0298 -4.6 -9.2 orotidine 5 compare
Atu2747 -4.6 -13.5 hypothetical protein compare
Atu0647 -4.6 -7.7 phosphoribosylamine--glycine ligase compare
Atu0017 -4.6 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1030 -4.6 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1454 -4.5 -7.4 siroheme synthase compare
Atu4098 -4.4 -14.1 quinolinate synthetase compare
Atu0030 -4.3 -2.5 phosphocarrier protein HPr compare
Atu4096 -4.3 -12.9 nicotinate-nucleotide pyrophosphorylase compare
Atu4773 -4.3 -2.2 two component response regulator compare
Atu2155 -4.2 -23.3 methionine synthase compare
Atu3483 -4.1 -6.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3461 -4.1 -3.8 GntR family transcriptional regulator compare
Atu0062 -4.0 -12.1 transcriptional regulator, ROK family compare
Atu4711 -3.9 -9.0 two component sensor kinase compare
Atu3731 -3.8 -9.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu3908 -3.7 -17.8 GntR family transcriptional regulator compare
Atu2239 -3.6 -5.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0331 -3.6 -4.9 sigma-54 modulation protein compare
Atu4364 -3.5 -12.5 LacI family transcriptional regulator compare
Atu1455 -3.5 -5.8 hypothetical protein compare
Atu0368 -3.5 -7.4 tRNA pseudouridine synthase I compare
Atu4097 -3.4 -12.1 L-aspartate oxidase compare
Atu1904 -3.3 -7.0 transcriptional regulator compare
Atu2238 -3.3 -7.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4446 -3.3 -14.7 hypothetical protein compare
Atu0322 -3.2 -7.5 enoyl CoA hydratase compare
Atu4514 -3.2 -6.2 RpiR family transcriptional regulator compare
Atu1286 -3.1 -6.6 hypothetical protein compare
Atu3337 -3.1 -15.1 LacI family transcriptional regulator compare
Atu2237 -3.0 -8.4 cytochrome c1 compare
Atu2532 -3.0 -6.6 transcriptional regulator, MarR family compare
Atu0912 -3.0 -2.5 Na+/H+ antiporter compare
Atu0101 -3.0 -5.2 cytochrome c compare
Atu2035 -2.9 -9.9 acetolactate synthase, small subunit compare
Atu0768 -2.9 -16.6 cytochrome-c oxidase chain I compare
Atu1242 -2.9 -12.3 cytochrome oxidase assembly factor compare
Atu3162 -2.9 -14.0 LacI family transcriptional regulator compare
Atu4685 -2.9 -7.6 LacI family transcriptional regulator compare
Atu1748 -2.8 -7.4 NIFU-like protein compare
Atu0590 -2.8 -9.6 transcriptional regulator repressor compare
Atu2821 -2.8 -4.6 transcriptional regulator, GntR family compare
Atu2684 -2.8 -3.7 hypothetical protein compare
Atu4232 -2.8 -8.8 GntR family transcriptional regulator compare
Atu0040 -2.7 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2115 -2.7 -12.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1685 -2.7 -1.9 hypothetical protein compare
Atu1446 -2.7 -3.5 two component response regulator compare
Atu3343 -2.6 -12.4 trehalose utilization-like protein compare
Atu0981 -2.6 -8.3 glutamate-ammonia-ligase adenylyltransferase compare
Atu3342 -2.5 -9.8 trehalose utilization-like protein compare
Atu0434 -2.5 -3.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0767 -2.4 -6.8 cytochrome c oxidase subunit II compare
Atu0641 -2.4 -5.0 hypothetical protein compare
Atu6114 -2.4 -3.9 hypothetical protein compare
Atu1074 -2.4 -11.1 NAD/NADP dependent oxidoreductase compare
Atu2726 -2.4 -17.7 pyruvate carboxylase compare
Atu0770 -2.4 -9.6 cytochrome C oxidase assembly protein compare
Atu3598 -2.4 -3.3 thiol:disulfide interchange protein compare
Atu4743 -2.3 -9.1 LacI family transcriptional regulator compare
Atu3613 -2.3 -7.0 hypothetical protein compare
Atu0401 -2.3 -7.4 fructokinase compare
Atu1457 -2.2 -3.7 hypothetical protein compare
Atu0029 -2.2 -7.1 S-adenosylhomocysteine hydrolase compare
Atu2569 -2.1 -12.8 thiamine biosynthesis protein compare
Atu3730 -2.1 -2.0 hypothetical protein compare
Atu4451 -2.1 -11.4 mannitol 2-dehydrogenase compare
Atu0771 -2.1 -8.9 cytochrome c oxidase subunit III compare
Atu3290 -2.1 -11.9 phosphomethylpyrimidine kinase compare
Atu2831 -2.1 -5.3 glucose inhibited division protein A compare
Atu4674 -2.0 -11.1 GntR family transcriptional regulator compare
Atu3910 -2.0 -7.4 LamB/YcsF family protein compare
Atu2832 -2.0 -5.9 tRNA modification GTPase compare
Atu3142 -2.0 -12.9 5-keto-4-deoxyuronate isomerase compare
Atu2123 -2.0 -9.3 methylenetetrahydrofolate reductase compare
Atu3289 -1.9 -4.5 thiamine-phosphate pyrophosphorylase compare
Atu3141 -1.9 -10.3 2-deoxy-D-gluconate 3-dehydrogenase compare
Atu2548 -1.9 -11.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2207 -1.9 -3.4 two component sensor kinase compare
Atu4599 -1.8 -7.4 IclR family transcriptional regulator compare
Atu0977 -1.8 -3.8 serine protease DO-like protease compare
Atu1464 -1.8 -7.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu1285 -1.8 -6.1 metal dependent hydrolase compare
Atu4824 -1.8 -10.2 IclR family transcriptional regulator compare
Atu3288 -1.8 -6.6 hydroxyethylthiazole kinase compare
Atu0663 -1.7 -10.1 hypothetical protein compare
Atu5430 -1.7 -1.5 hypothetical protein compare
Atu0876 -1.7 -2.6 superoxide dismutase compare
Atu1770 -1.7 -9.5 glutamine synthetase compare
Atu1327 -1.7 -3.6 NADH-ubiquinone oxidoreductase compare
Atu3453 -1.7 -5.4 isomerase/lactonizing enzyme compare
Atu3356 -1.7 -13.1 malic enzyme compare
Atu3912 -1.7 -7.1 hypothetical protein compare
Atu6098 -1.6 -0.9 transcriptional regulator, HTH family compare
Atu1463 -1.6 -5.5 glycine cleavage system component H compare
Atu1891 -1.6 -4.6 cobalamin biosynthesis protein compare
Atu2808 -1.6 -8.3 cobyric acid synthase compare
Atu0846 -1.6 -4.7 transcriptional regulator, MarR family compare
Atu4825 -1.6 -7.4 dehydrogenase compare
Atu1462 -1.6 -10.3 glycine cleavage system protein P2 compare
Atu4193 -1.6 -7.1 oligopeptide ABC transporter permease compare
Atu2209 -1.6 -4.3 pyrroline-5-carboxylate reductase compare
Atu0723 -1.6 -2.0 FAD dependent oxidoreductase compare
Atu3147 -1.5 -9.9 oxidoreductase compare
Atu3913 -1.5 -8.9 biotin carboxylase compare
Atu3971 -1.5 -10.4 dihydroxy-acid dehydratase compare
Atu8115 -1.5 -4.5 Hypothetical Protein compare
Atu4077 -1.5 -9.5 glycogen branching protein compare
Atu3997 -1.5 -9.9 biotin synthetase compare
Atu2801 -1.4 -3.7 precorrin-2 C20 methyltransferase compare
Atu2809 -1.4 -8.5 cobalamin biosynthesis protein compare
Atu4195 -1.4 -10.5 oligopeptide ABC transporter ATPase compare
Atu4192 -1.4 -9.9 oligopeptide ABC transporter substrate-binding protein compare
Atu4702 -1.4 -5.3 GntR family transcriptional regulator compare
Atu3763 -1.3 -1.7 hypothetical protein compare
Atu2796 -1.3 -4.1 precorrin-4 C11-methyltransferase compare
Atu5075 -1.3 -5.5 GntR family transcriptional regulator compare
Atu4194 -1.3 -9.3 oligopeptide ABC transporter permease compare
Atu2799 -1.3 -4.6 precorrin-6x reductase compare
Atu0784 -1.3 -2.1 hypothetical protein compare
Atu0803 -1.3 -9.7 pyruvate,orthophosphate dikinase compare
Atu2804 -1.3 -8.4 cobaltochelatase subunit compare
Atu2793 -1.2 -5.4 cobyrinic acid a,c-diamide synthase compare
Atu2803 -1.2 -4.2 Cobalamin biosynthesis associated protein compare
Atu1705 -1.2 -2.8 SEC-independent protein translocase protein compare
Atu3075 -1.2 -6.1 TetR family transcriptional regulator compare
Atu3878 -1.2 -7.8 transcriptional regulator compare
Atu3280 -1.2 -6.5 GntR family transcriptional regulator compare
Atu4576 -1.2 -7.4 ROK family transcriptional regulator compare
Atu0536 -1.2 -5.1 hypothetical protein compare
Atu2205 -1.2 -4.0 transcriptional regulator, MarR family compare
Atu1445 -1.2 -4.8 two component sensor kinase compare
Atu0636 -1.2 -4.6 hypothetical protein compare


Specific Phenotypes

For 59 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Agrobacterium fabrum C58

For carbon source D-Galacturonic Acid monohydrate across organisms