Experiment set2IT045 for Variovorax sp. OAS795

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS24045 -5.3 -3.7 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS01565 -5.1 -8.5 DNA starvation/stationary phase protection protein compare
ABID97_RS23225 -4.8 -9.7 glutamate synthase-related protein compare
ABID97_RS13870 -4.8 -4.6 hypothetical protein compare
ABID97_RS11115 -4.1 -12.6 isocitrate lyase compare
ABID97_RS25190 -4.1 -12.9 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABID97_RS04710 -3.8 -7.3 malate synthase G compare
ABID97_RS06575 -3.5 -6.3 trehalose-phosphatase compare
ABID97_RS24040 -3.4 -2.1 MarR family transcriptional regulator compare
ABID97_RS04960 -3.3 -1.4 ATP-binding protein compare
ABID97_RS08860 -3.3 -2.9 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS19630 -3.3 -1.4 TRAP transporter small permease compare
ABID97_RS15505 -3.2 -1.4 ATP-binding cassette domain-containing protein compare
ABID97_RS16600 -3.2 -6.7 CysB family HTH-type transcriptional regulator compare
ABID97_RS09180 -3.1 -2.1 DNA polymerase I compare
ABID97_RS17540 -3.0 -2.1 NAD(P)-dependent oxidoreductase compare
ABID97_RS18625 -2.9 -1.3 alpha/beta hydrolase compare
ABID97_RS14920 -2.9 -7.4 IclR family transcriptional regulator compare
ABID97_RS08425 -2.9 -2.9 tryptophan synthase subunit alpha compare
ABID97_RS13860 -2.9 -5.0 hypothetical protein compare
ABID97_RS23220 -2.9 -1.6 glutamate synthase subunit beta compare
ABID97_RS05250 -2.6 -5.0 anthranilate synthase component I compare
ABID97_RS21150 -2.6 -8.4 FAD-dependent oxidoreductase compare
ABID97_RS10885 -2.6 -3.9 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS28635 -2.5 -2.9 IclR family transcriptional regulator compare
ABID97_RS16535 -2.4 -5.7 arginine/lysine/ornithine decarboxylase compare
ABID97_RS25015 -2.4 -2.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS15095 -2.4 -1.4 hypothetical protein compare
ABID97_RS29030 -2.3 -1.4 3-isopropylmalate dehydratase small subunit compare
ABID97_RS15995 -2.3 -4.6 PilZ domain-containing protein compare
ABID97_RS00255 -2.3 -11.3 type IV pilus twitching motility protein PilT compare
ABID97_RS12575 -2.3 -1.4 ATP-grasp domain-containing protein compare
ABID97_RS15380 -2.2 -6.6 nitrite/sulfite reductase compare
ABID97_RS28005 -2.2 -1.9 phosphopyruvate hydratase compare
ABID97_RS07430 -2.2 -7.3 pantoate--beta-alanine ligase compare
ABID97_RS23440 -2.2 -8.9 A24 family peptidase compare
ABID97_RS02110 -2.2 -8.1 type IV pilus modification protein PilV compare
ABID97_RS00340 -2.2 -9.5 DUF2946 family protein compare
ABID97_RS03140 -2.1 -1.2 tRNA-Gly compare
ABID97_RS07850 -2.1 -5.2 ABC transporter ATP-binding protein compare
ABID97_RS08855 -2.1 -2.8 thiolase family protein compare
ABID97_RS03680 -2.1 -4.7 lysophospholipid transporter LplT compare
ABID97_RS02115 -2.0 -9.6 PilW family protein compare
ABID97_RS07405 -2.0 -9.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS02125 -2.0 -14.4 PilC/PilY family type IV pilus protein compare
ABID97_RS17600 -2.0 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS02600 -2.0 -3.0 homoserine O-acetyltransferase compare
ABID97_RS07340 -2.0 -1.7 hypothetical protein compare
ABID97_RS05275 -2.0 -1.4 anthranilate phosphoribosyltransferase compare
ABID97_RS09935 -2.0 -7.2 hypothetical protein compare
ABID97_RS23430 -1.9 -9.1 type IV-A pilus assembly ATPase PilB compare
ABID97_RS07775 -1.9 -2.2 phosphoribosylglycinamide formyltransferase compare
ABID97_RS10385 -1.9 -1.6 MFS transporter compare
ABID97_RS01725 -1.9 -1.1 META domain-containing protein compare
ABID97_RS02135 -1.9 -4.8 GspH/FimT family pseudopilin compare
ABID97_RS20615 -1.9 -3.6 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS02455 -1.9 -2.6 nucleotidyltransferase family protein compare
ABID97_RS23270 -1.9 -7.1 pilus assembly protein PilP compare
ABID97_RS17590 -1.9 -8.4 endopeptidase La compare
ABID97_RS02130 -1.9 -7.2 type IV pilin protein compare
ABID97_RS19380 -1.9 -2.2 2-methylcitrate synthase compare
ABID97_RS24705 -1.8 -4.5 response regulator compare
ABID97_RS06920 -1.8 -2.1 7-cyano-7-deazaguanine synthase QueC compare
ABID97_RS13865 -1.8 -3.9 hypothetical protein compare
ABID97_RS14975 -1.8 -3.2 hypothetical protein compare
ABID97_RS02120 -1.8 -6.9 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02145 -1.8 -4.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS28245 -1.8 -0.9 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS14160 -1.8 -4.2 cell division protein ZapE compare
ABID97_RS23650 -1.7 -10.6 serine/threonine-protein kinase compare
ABID97_RS01825 -1.7 -9.1 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS23435 -1.7 -9.9 type II secretion system F family protein compare
ABID97_RS05280 -1.7 -1.2 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS28990 -1.7 -3.6 aspartate 1-decarboxylase compare
ABID97_RS06275 -1.7 -1.2 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS08195 -1.7 -4.1 histidine kinase compare
ABID97_RS13565 -1.7 -3.5 ABC transporter ATP-binding protein compare
ABID97_RS16175 -1.7 -1.4 response regulator transcription factor compare
ABID97_RS15370 -1.7 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS08865 -1.6 -2.0 cyclase family protein compare
ABID97_RS05750 -1.6 -1.1 glycosyltransferase compare
ABID97_RS03915 -1.6 -3.8 DUF4124 domain-containing protein compare
ABID97_RS16050 -1.6 -1.3 isochorismatase family cysteine hydrolase compare
ABID97_RS07855 -1.6 -2.0 ABC transporter ATP-binding protein compare
ABID97_RS02140 -1.6 -6.6 sugar transferase compare
ABID97_RS18505 -1.6 -0.9 transglutaminase family protein compare
ABID97_RS06415 -1.5 -8.2 sigma-54 dependent transcriptional regulator compare
ABID97_RS06175 -1.5 -10.1 STAS domain-containing protein compare
ABID97_RS23265 -1.5 -6.2 type IV pilus secretin PilQ compare
ABID97_RS16695 -1.5 -7.2 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS27980 -1.5 -1.3 alcohol dehydrogenase catalytic domain-containing protein compare
ABID97_RS08095 -1.5 -2.0 phosphonate ABC transporter, permease protein PhnE compare
ABID97_RS22705 -1.5 -6.0 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS23485 -1.5 -1.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS13990 -1.5 -2.3 amino acid aminotransferase compare
ABID97_RS08445 -1.5 -4.4 FimV/HubP family polar landmark protein compare
ABID97_RS07345 -1.5 -1.6 hypothetical protein compare
ABID97_RS23455 -1.5 -1.8 hypothetical protein compare
ABID97_RS22375 -1.5 -1.1 OsmC family protein compare
ABID97_RS16985 -1.5 -2.2 transcriptional repressor LexA compare
ABID97_RS17840 -1.5 -1.3 DNA-3-methyladenine glycosylase 2 family protein compare
ABID97_RS25525 -1.5 -2.0 LacI family DNA-binding transcriptional regulator compare
ABID97_RS23525 -1.5 -1.2 urease subunit beta compare
ABID97_RS14075 -1.5 -2.6 glutaredoxin family protein compare
ABID97_RS27015 -1.4 -1.0 DoxX family protein compare
ABID97_RS02200 -1.4 -9.4 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS25085 -1.4 -2.2 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS16915 -1.4 -4.1 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS05755 -1.4 -1.0 glycosyltransferase compare
ABID97_RS20095 -1.4 -1.4 DNA topoisomerase IV subunit B compare
ABID97_RS13360 -1.4 -1.5 ABC transporter ATP-binding protein compare
ABID97_RS02420 -1.4 -3.7 protealysin inhibitor emfourin compare
ABID97_RS03800 -1.4 -1.0 O-antigen ligase family protein compare
ABID97_RS16595 -1.4 -2.2 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS15360 -1.4 -2.7 GTP-binding protein compare
ABID97_RS07750 -1.4 -2.4 IS630 family transposase compare
ABID97_RS24690 -1.4 -5.8 methyl-accepting chemotaxis protein compare
ABID97_RS17850 -1.4 -0.7 tetratricopeptide repeat protein compare
ABID97_RS00900 -1.3 -1.6 pyridoxamine 5'-phosphate oxidase family protein compare
ABID97_RS23380 -1.3 -6.4 lytic transglycosylase domain-containing protein compare
ABID97_RS19930 -1.3 -1.0 DUF2160 domain-containing protein compare
ABID97_RS23450 -1.3 -2.5 MBOAT family protein compare
ABID97_RS25895 -1.3 -1.1 ABC transporter permease compare
ABID97_RS17085 -1.3 -1.6 ORF6N domain-containing protein compare
ABID97_RS13245 -1.3 -0.8 XRE family transcriptional regulator compare
ABID97_RS28625 -1.3 -3.0 MaoC family dehydratase N-terminal domain-containing protein compare
ABID97_RS07000 -1.3 -5.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS17595 -1.3 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS06875 -1.3 -1.9 dihydrodipicolinate synthase family protein compare
ABID97_RS05765 -1.3 -0.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS04630 -1.3 -3.3 glutathione synthase compare
ABID97_RS24170 -1.3 -3.2 ATP-binding protein compare
ABID97_RS24295 -1.3 -0.8 type II secretion system F family protein compare
ABID97_RS10370 -1.3 -1.2 nuclear transport factor 2 family protein compare
ABID97_RS08220 -1.2 -5.8 phosphoenolpyruvate carboxylase compare
ABID97_RS23970 -1.2 -8.0 DUF2244 domain-containing protein compare
ABID97_RS03805 -1.2 -0.8 ATP-binding protein compare
ABID97_RS23285 -1.2 -6.5 pilus assembly protein PilM compare
ABID97_RS08830 -1.2 -1.2 indolepyruvate oxidoreductase subunit beta family protein compare
ABID97_RS23275 -1.2 -6.1 type 4a pilus biogenesis protein PilO compare
ABID97_RS12155 -1.2 -5.3 glycogen debranching protein GlgX compare
ABID97_RS01015 -1.2 -1.0 potassium-transporting ATPase subunit KdpC compare
ABID97_RS09635 -1.2 -2.0 DEAD/DEAH box helicase family protein compare
ABID97_RS12020 -1.2 -1.0 polysaccharide pyruvyl transferase family protein compare
ABID97_RS06420 -1.2 -4.4 ATP-binding protein compare
ABID97_RS06600 -1.2 -2.8 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS15665 -1.2 -2.8 [protein-PII] uridylyltransferase compare
ABID97_RS23230 -1.2 -5.8 transposase compare
ABID97_RS05235 -1.2 -0.7 PA2169 family four-helix-bundle protein compare
ABID97_RS03205 -1.2 -3.7 acyl-CoA dehydrogenase compare
ABID97_RS16565 -1.2 -5.0 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS05260 -1.2 -0.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS01840 -1.2 -2.6 DUF1631 family protein compare
ABID97_RS05095 -1.2 -0.8 DUF4150 domain-containing protein compare
ABID97_RS07845 -1.2 -5.4 ABC transporter ATP-binding protein compare
ABID97_RS07435 -1.2 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS13615 -1.2 -1.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
ABID97_RS23015 -1.1 -5.2 glycosyltransferase family 4 protein compare
ABID97_RS09130 -1.1 -0.7 tRNA-Ala compare
ABID97_RS06620 -1.1 -3.1 Crp/Fnr family transcriptional regulator compare
ABID97_RS08435 -1.1 -0.8 phosphoribosylanthranilate isomerase compare
ABID97_RS04760 -1.1 -1.0 SPOR domain-containing protein compare
ABID97_RS18875 -1.1 -2.6 branched-chain amino acid ABC transporter permease compare
ABID97_RS28000 -1.1 -0.7 NADPH-dependent FMN reductase compare
ABID97_RS23425 -1.1 -1.0 tRNA-Pro compare
ABID97_RS22195 -1.1 -0.9 hypothetical protein compare
ABID97_RS28390 -1.1 -1.5 MFS transporter compare
ABID97_RS05370 -1.1 -2.5 ATP-binding protein compare
ABID97_RS00360 -1.1 -2.5 LemA family protein compare
ABID97_RS17970 -1.1 -3.7 protein TolQ compare
ABID97_RS18080 -1.1 -0.9 alpha/beta hydrolase compare
ABID97_RS04825 -1.1 -4.9 hypothetical protein compare
ABID97_RS28395 -1.1 -1.0 LysR substrate-binding domain-containing protein compare
ABID97_RS05845 -1.1 -1.8 SDR family oxidoreductase compare
ABID97_RS04525 -1.1 -2.3 biopolymer transporter ExbD compare
ABID97_RS02775 -1.1 -4.7 VIT and VWA domain-containing protein compare
ABID97_RS16910 -1.1 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS13435 -1.0 -1.0 fumarylacetoacetate hydrolase family protein compare
ABID97_RS19550 -1.0 -0.8 phosphatase PAP2 family protein compare
ABID97_RS22870 -1.0 -1.2 ABC transporter ATP-binding protein compare
ABID97_RS10910 -1.0 -1.5 MoaD/ThiS family protein compare
ABID97_RS19495 -1.0 -1.7 glucan biosynthesis protein D compare
ABID97_RS19645 -1.0 -2.1 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS27290 -1.0 -0.8 methyltransferase domain-containing protein compare
ABID97_RS11750 -1.0 -1.0 trimeric intracellular cation channel family protein compare
ABID97_RS18325 -1.0 -1.2 hypothetical protein compare
ABID97_RS12110 -1.0 -0.7 phosphoribosyltransferase family protein compare
ABID97_RS06060 -1.0 -0.8 hypothetical protein compare
ABID97_RS26840 -1.0 -1.0 hypothetical protein compare
ABID97_RS08000 -1.0 -2.0 putative glycolipid-binding domain-containing protein compare
ABID97_RS19010 -1.0 -0.8 hypothetical protein compare
ABID97_RS03630 -1.0 -2.3 P-II family nitrogen regulator compare
ABID97_RS10690 -1.0 -3.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS07490 -1.0 -1.2 YceH family protein compare
ABID97_RS10820 -1.0 -2.2 hypothetical protein compare
ABID97_RS06160 -1.0 -3.6 GTP-binding protein compare
ABID97_RS11480 -1.0 -1.3 hypothetical protein compare
ABID97_RS17330 -1.0 -0.9 adenosylcobinamide-GDP ribazoletransferase compare
ABID97_RS27500 -1.0 -0.9 AMP-binding protein compare
ABID97_RS10685 -1.0 -3.6 hypothetical protein compare


Specific Phenotypes

For 25 genes in this experiment

For carbon source Sodium butyrate in Variovorax sp. OAS795

For carbon source Sodium butyrate across organisms