Experiment set2IT044 for Variovorax sp. OAS795

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS20615 -6.5 -5.8 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS22625 -6.1 -12.0 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23225 -5.9 -18.6 glutamate synthase-related protein compare
ABID97_RS22620 -5.4 -8.2 response regulator transcription factor compare
ABID97_RS05260 -5.2 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS06575 -5.1 -7.1 trehalose-phosphatase compare
ABID97_RS16600 -5.0 -9.7 CysB family HTH-type transcriptional regulator compare
ABID97_RS16595 -4.8 -5.1 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS05250 -4.6 -7.8 anthranilate synthase component I compare
ABID97_RS14095 -4.5 -12.0 PAS domain S-box protein compare
ABID97_RS08220 -4.5 -13.0 phosphoenolpyruvate carboxylase compare
ABID97_RS09180 -4.4 -5.2 DNA polymerase I compare
ABID97_RS01565 -4.3 -12.8 DNA starvation/stationary phase protection protein compare
ABID97_RS06345 -4.2 -2.9 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23220 -4.1 -2.2 glutamate synthase subunit beta compare
ABID97_RS17600 -4.1 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS08425 -4.1 -6.2 tryptophan synthase subunit alpha compare
ABID97_RS25015 -4.0 -4.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS13990 -4.0 -3.9 amino acid aminotransferase compare
ABID97_RS07000 -4.0 -10.2 threonine ammonia-lyase, biosynthetic compare
ABID97_RS02600 -3.9 -5.9 homoserine O-acetyltransferase compare
ABID97_RS05280 -3.7 -2.6 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS02455 -3.7 -3.4 nucleotidyltransferase family protein compare
ABID97_RS13860 -3.7 -7.7 hypothetical protein compare
ABID97_RS23425 -3.5 -2.9 tRNA-Pro compare
ABID97_RS15800 -3.4 -2.0 NAD(P)H-dependent oxidoreductase compare
ABID97_RS14090 -3.4 -2.0 response regulator transcription factor compare
ABID97_RS23455 -3.4 -4.0 hypothetical protein compare
ABID97_RS25085 -3.3 -4.5 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS08435 -3.2 -2.2 phosphoribosylanthranilate isomerase compare
ABID97_RS05750 -3.2 -3.1 glycosyltransferase compare
ABID97_RS15375 -3.2 -6.3 DUF934 domain-containing protein compare
ABID97_RS03125 -3.2 -10.5 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS07405 -3.2 -10.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS20025 -3.1 -2.2 D-glycerate dehydrogenase compare
ABID97_RS04610 -3.1 -9.4 potassium transporter Kup compare
ABID97_RS16470 -3.1 -2.1 translational GTPase TypA compare
ABID97_RS07065 -3.0 -13.5 glucose-6-phosphate dehydrogenase compare
ABID97_RS05765 -3.0 -2.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS24920 -3.0 -2.1 Holliday junction branch migration protein RuvA compare
ABID97_RS17590 -2.9 -11.8 endopeptidase La compare
ABID97_RS06450 -2.9 -2.0 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS04500 -2.9 -2.0 HPr(Ser) kinase/phosphatase compare
ABID97_RS19760 -2.8 -5.3 ROK family transcriptional regulator compare
ABID97_RS21300 -2.7 -5.2 phosphogluconate dehydratase compare
ABID97_RS05725 -2.7 -7.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABID97_RS10885 -2.6 -4.6 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS03805 -2.6 -2.1 ATP-binding protein compare
ABID97_RS16910 -2.6 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS17850 -2.6 -1.3 tetratricopeptide repeat protein compare
ABID97_RS24055 -2.6 -3.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS15665 -2.6 -6.8 [protein-PII] uridylyltransferase compare
ABID97_RS17265 -2.6 -3.2 two-component system response regulator OmpR compare
ABID97_RS03680 -2.6 -7.6 lysophospholipid transporter LplT compare
ABID97_RS05275 -2.6 -2.5 anthranilate phosphoribosyltransferase compare
ABID97_RS28635 -2.5 -6.3 IclR family transcriptional regulator compare
ABID97_RS07430 -2.5 -9.2 pantoate--beta-alanine ligase compare
ABID97_RS06275 -2.5 -2.3 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS10295 -2.5 -1.5 winged helix-turn-helix transcriptional regulator compare
ABID97_RS24170 -2.5 -5.5 ATP-binding protein compare
ABID97_RS06460 -2.5 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS14100 -2.4 -11.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS23230 -2.4 -8.9 transposase compare
ABID97_RS15380 -2.4 -6.7 nitrite/sulfite reductase compare
ABID97_RS21150 -2.4 -10.1 FAD-dependent oxidoreductase compare
ABID97_RS07435 -2.4 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS05670 -2.4 -2.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS03110 -2.4 -6.3 helix-turn-helix transcriptional regulator compare
ABID97_RS14625 -2.4 -3.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS23450 -2.3 -6.2 MBOAT family protein compare
ABID97_RS17360 -2.3 -2.6 alpha/beta hydrolase compare
ABID97_RS06600 -2.3 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS03800 -2.3 -3.1 O-antigen ligase family protein compare
ABID97_RS02420 -2.3 -7.5 protealysin inhibitor emfourin compare
ABID97_RS14105 -2.2 -2.3 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS08860 -2.2 -3.6 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS01755 -2.2 -7.3 pyruvate kinase compare
ABID97_RS14050 -2.2 -10.5 NAD(P)/FAD-dependent oxidoreductase compare
ABID97_RS29015 -2.1 -1.5 transcriptional regulator GcvA compare
ABID97_RS04505 -2.1 -2.3 ferric iron uptake transcriptional regulator compare
ABID97_RS05370 -2.1 -5.8 ATP-binding protein compare
ABID97_RS16690 -2.1 -5.7 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS06545 -2.1 -9.3 ROK family protein compare
ABID97_RS08855 -2.1 -3.7 thiolase family protein compare
ABID97_RS10920 -2.0 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS21945 -2.0 -4.0 hemolysin family protein compare
ABID97_RS04480 -2.0 -2.7 magnesium/cobalt transporter CorA compare
ABID97_RS00255 -2.0 -11.3 type IV pilus twitching motility protein PilT compare
ABID97_RS08240 -2.0 -1.8 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS05755 -2.0 -3.0 glycosyltransferase compare
ABID97_RS23710 -1.9 -9.3 RNase adapter RapZ compare
ABID97_RS07130 -1.9 -4.6 D-arabinitol 4-dehydrogenase compare
ABID97_RS16695 -1.9 -10.7 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS02125 -1.9 -15.6 PilC/PilY family type IV pilus protein compare
ABID97_RS13570 -1.9 -4.1 IclR family transcriptional regulator compare
ABID97_RS02145 -1.9 -6.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS05795 -1.9 -3.8 malate/lactate/ureidoglycolate dehydrogenase compare
ABID97_RS15995 -1.9 -4.0 PilZ domain-containing protein compare
ABID97_RS02120 -1.9 -8.6 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02110 -1.9 -11.2 type IV pilus modification protein PilV compare
ABID97_RS02115 -1.9 -9.1 PilW family protein compare
ABID97_RS02460 -1.9 -10.6 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS23645 -1.9 -2.4 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS05800 -1.8 -7.5 altronate dehydratase family protein compare
ABID97_RS23435 -1.8 -10.9 type II secretion system F family protein compare
ABID97_RS01650 -1.7 -1.7 orotidine-5'-phosphate decarboxylase compare
ABID97_RS23430 -1.7 -10.0 type IV-A pilus assembly ATPase PilB compare
ABID97_RS09405 -1.7 -1.4 xanthine dehydrogenase family protein subunit M compare
ABID97_RS27535 -1.7 -1.5 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS14850 -1.7 -3.0 P-II family nitrogen regulator compare
ABID97_RS08865 -1.7 -3.1 cyclase family protein compare
ABID97_RS03640 -1.7 -3.5 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS01840 -1.7 -10.6 DUF1631 family protein compare
ABID97_RS02130 -1.7 -9.0 type IV pilin protein compare
ABID97_RS17970 -1.7 -3.4 protein TolQ compare
ABID97_RS15370 -1.6 -6.8 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS27625 -1.6 -1.3 NAD(P)-binding domain-containing protein compare
ABID97_RS08430 -1.6 -2.2 tryptophan synthase subunit beta compare
ABID97_RS02135 -1.6 -4.6 GspH/FimT family pseudopilin compare
ABID97_RS23440 -1.6 -7.0 A24 family peptidase compare
ABID97_RS00340 -1.6 -9.7 DUF2946 family protein compare
ABID97_RS17270 -1.6 -7.1 ATP-binding protein compare
ABID97_RS08445 -1.6 -7.6 FimV/HubP family polar landmark protein compare
ABID97_RS02140 -1.6 -8.8 sugar transferase compare
ABID97_RS28990 -1.6 -6.0 aspartate 1-decarboxylase compare
ABID97_RS12415 -1.6 -9.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS07775 -1.5 -2.3 phosphoribosylglycinamide formyltransferase compare
ABID97_RS16915 -1.5 -7.9 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS28600 -1.5 -1.0 aspartate aminotransferase family protein compare
ABID97_RS03915 -1.5 -5.8 DUF4124 domain-containing protein compare
ABID97_RS11640 -1.4 -8.1 TetR family transcriptional regulator compare
ABID97_RS04760 -1.4 -1.8 SPOR domain-containing protein compare
ABID97_RS19040 -1.4 -1.4 isocitrate/isopropylmalate dehydrogenase family protein compare
ABID97_RS23270 -1.4 -5.5 pilus assembly protein PilP compare
ABID97_RS08480 -1.4 -1.9 citrate synthase compare
ABID97_RS10355 -1.4 -5.1 FadR/GntR family transcriptional regulator compare
ABID97_RS19375 -1.4 -3.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS01825 -1.4 -9.2 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS05810 -1.4 -2.2 TRAP transporter small permease compare
ABID97_RS03115 -1.4 -4.5 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS23380 -1.4 -9.8 lytic transglycosylase domain-containing protein compare
ABID97_RS14665 -1.4 -2.5 UvrD-helicase domain-containing protein compare
ABID97_RS25100 -1.4 -6.4 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS13450 -1.4 -2.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS21185 -1.4 -6.7 carbohydrate ABC transporter permease compare
ABID97_RS16535 -1.4 -5.3 arginine/lysine/ornithine decarboxylase compare
ABID97_RS21190 -1.4 -4.2 sugar ABC transporter permease compare
ABID97_RS23650 -1.4 -9.6 serine/threonine-protein kinase compare
ABID97_RS06420 -1.3 -7.4 ATP-binding protein compare
ABID97_RS23915 -1.3 -3.2 heme o synthase compare
ABID97_RS14115 -1.3 -3.0 dihydrolipoyl dehydrogenase compare
ABID97_RS06175 -1.3 -9.5 STAS domain-containing protein compare
ABID97_RS26160 -1.3 -1.1 nuclear transport factor 2 family protein compare
ABID97_RS22705 -1.3 -7.5 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS16985 -1.3 -3.1 transcriptional repressor LexA compare
ABID97_RS17895 -1.3 -5.1 transcriptional regulator NrdR compare
ABID97_RS12180 -1.3 -1.6 hypothetical protein compare
ABID97_RS27795 -1.3 -0.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS03910 -1.3 -1.7 orotate phosphoribosyltransferase compare
ABID97_RS05365 -1.3 -3.4 DUF4390 domain-containing protein compare
ABID97_RS19010 -1.3 -1.4 hypothetical protein compare
ABID97_RS07260 -1.3 -3.8 TIM44-like domain-containing protein compare
ABID97_RS24690 -1.3 -6.0 methyl-accepting chemotaxis protein compare
ABID97_RS24705 -1.3 -5.3 response regulator compare
ABID97_RS23940 -1.2 -6.1 cytochrome c oxidase subunit 3 compare
ABID97_RS18820 -1.2 -0.9 PrpF domain-containing protein compare
ABID97_RS06520 -1.2 -1.8 SAM-dependent methyltransferase compare
ABID97_RS09830 -1.2 -1.0 hypothetical protein compare
ABID97_RS10735 -1.2 -4.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABID97_RS21180 -1.2 -5.9 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABID97_RS12460 -1.2 -1.6 acetoacetyl-CoA reductase compare
ABID97_RS19065 -1.2 -3.0 GntR family transcriptional regulator compare
ABID97_RS09935 -1.2 -4.8 hypothetical protein compare
ABID97_RS15580 -1.2 -2.5 sulfate ABC transporter permease subunit CysW compare
ABID97_RS09595 -1.2 -1.4 Arc family DNA-binding protein compare
ABID97_RS07610 -1.2 -1.1 response regulator transcription factor compare
ABID97_RS23265 -1.2 -7.1 type IV pilus secretin PilQ compare
ABID97_RS06415 -1.2 -6.7 sigma-54 dependent transcriptional regulator compare
ABID97_RS14200 -1.2 -3.6 pseudouridine synthase compare
ABID97_RS21195 -1.2 -4.5 ABC transporter substrate-binding protein compare
ABID97_RS15695 -1.2 -5.6 peptide-methionine (R)-S-oxide reductase MsrB compare
ABID97_RS17225 -1.1 -4.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS05815 -1.1 -4.9 sialic acid TRAP transporter substrate-binding protein SiaP compare
ABID97_RS06190 -1.1 -2.1 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS06095 -1.1 -6.7 MBL fold metallo-hydrolase compare
ABID97_RS05805 -1.1 -5.0 TRAP transporter large permease compare
ABID97_RS28945 -1.1 -1.0 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS12020 -1.1 -1.3 polysaccharide pyruvyl transferase family protein compare
ABID97_RS02200 -1.1 -9.1 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS15360 -1.1 -3.9 GTP-binding protein compare
ABID97_RS11555 -1.1 -2.1 ABC transporter substrate-binding protein compare
ABID97_RS04765 -1.1 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS06140 -1.1 -1.8 DUF484 family protein compare
ABID97_RS10690 -1.1 -5.6 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS28290 -1.1 -0.9 hypothetical protein compare
ABID97_RS12850 -1.1 -2.4 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS07500 -1.1 -1.5 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS23775 -1.1 -5.4 ABC transporter permease compare
ABID97_RS12820 -1.1 -1.2 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS12345 -1.1 -4.9 alpha/beta fold hydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Mannose in Variovorax sp. OAS795

For carbon source D-Mannose across organisms