Experiment set2IT044 for Escherichia coli BW25113

Compare to:

LB with Cisplatin 0.1 mg/ml

Genes with specific phenotypes:

  gene name fitness t score description  
b4058 uvrA -4.3 -11.7 excinuclease ABC subunit A (NCBI) conserved
b3700 recF -4.0 -7.2 recombination protein F (NCBI) conserved
b0779 uvrB -3.6 -5.4 excinuclease ABC subunit B (NCBI) conserved
b0060 polB -2.5 -11.3 DNA polymerase II (NCBI) conserved
b2616 recN -2.4 -7.7 recombination and repair protein (NCBI) conserved
b1114 mfd -2.4 -5.9 transcription-repair coupling factor (NCBI) conserved
b2431 b2431 -2.1 -6.4 orf, hypothetical protein (VIMSS) compare
b2796 sdaC -2.0 -10.3 predicted serine transporter (NCBI) compare
b0799 dinG -1.7 -5.5 ATP-dependent DNA helicase (NCBI) conserved
b2945 endA -1.7 -5.1 DNA-specific endonuclease I (NCBI) conserved
b2184 yejH -1.6 -6.2 DNA damage response helicase (yejH or radD) (from data) conserved
b4389 radA -1.6 -7.0 predicted repair protein (NCBI) conserved
b0948 ycbY -1.6 -5.7 predicted methyltransferase (NCBI) compare
b3416 malQ -1.4 -7.4 4-alpha-glucanotransferase (amylomaltase) (NCBI) compare
b3660 yicL -1.3 -8.5 predicted inner membrane protein (NCBI) compare
b0960 b0960 -1.3 -5.8 orf, hypothetical protein (VIMSS) compare
b3498 prlC -1.2 -5.9 oligopeptidase A (NCBI) compare
b3893 fdoH +1.1 5.6 formate dehydrogenase-O, Fe-S subunit (NCBI) compare
b3591 selA +1.3 7.5 selenocysteine synthase (NCBI) compare
b0846 ybjK +1.4 5.5 predicted DNA-binding transcriptional regulator (NCBI) compare
b4222 ytfP +1.4 5.3 hypothetical protein (NCBI) compare
b3894 fdoG +1.5 10.4 formate dehydrogenase-O, large subunit (NCBI) compare
b2909 ygfB +1.7 6.9 orf, hypothetical protein (VIMSS) compare
b3590 selB +1.7 11.0 selenocysteinyl-tRNA-specific translation factor (NCBI) compare
b2502 ppx +1.8 7.6 exopolyphosphatase (NCBI) compare
b1764 selD +1.9 5.2 selenophosphate synthetase (NCBI) compare
b0427 yajR +2.0 9.3 putative transport protein (VIMSS) compare
b1839 yebY +2.1 5.0 hypothetical protein (NCBI) compare
b1234 rssA +2.4 5.4 conserved protein (RefSeq) compare


Specific phenotypes for stress Cisplatin across organisms