| | gene | name | fitness | t score | description | |
|---|
| b0472 | recR | -5.0 | -3.5 | recombination protein RecR (NCBI) | conserved |
| b1913 | uvrC | -4.4 | -3.0 | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | conserved |
| b4058 | uvrA | -4.3 | -11.7 | excinuclease ABC subunit A (NCBI) | conserved |
| b3700 | recF | -4.0 | -7.2 | recombination protein F (NCBI) | conserved |
| b2565 | recO | -4.0 | -3.9 | DNA repair protein RecO (NCBI) | conserved |
| b1175 | minD | -3.9 | -4.6 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3813 | uvrD | -3.9 | -11.9 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b3387 | dam | -3.8 | -5.2 | DNA adenine methylase (NCBI) | compare |
| b4175 | hflC | -3.7 | -6.7 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1257 | yciE | -3.6 | -3.0 | hypothetical protein (NCBI) | compare |
| b0779 | uvrB | -3.6 | -5.4 | excinuclease ABC subunit B (NCBI) | conserved |
| b0605 | ahpC | -3.5 | -6.2 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b4174 | hflK | -3.4 | -6.9 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1184 | umuC | -3.3 | -3.9 | DNA polymerase V subunit UmuC (NCBI) | conserved |
| b3961 | oxyR | -3.3 | -10.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1984 | asnW | -3.3 | -1.0 | tRNA-Asn (NCBI) | compare |
| b0866 | ybjQ | -3.3 | -1.0 | hypothetical protein (NCBI) | compare |
| b4453 | ldrD | -3.1 | -2.1 | toxic polypeptide, small (NCBI) | compare |
| b2910 | zapA | -3.1 | -4.6 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1361 | ydaW | -3.1 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1231 | tyrT | -3.1 | -0.9 | tRNA-Tyr (NCBI) | compare |
| b2620 | smpB | -3.1 | -1.8 | SsrA-binding protein (NCBI) | compare |
| b0849 | grxA | -3.1 | -2.0 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b2808 | gcvA | -3.0 | -3.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2258 | b2258 | -3.0 | -0.9 | putative transport/receptor protein (VIMSS) | compare |
| b3002 | yqhA | -2.9 | -2.1 | hypothetical protein (NCBI) | compare |
| b2567 | rnc | -2.9 | -1.9 | ribonuclease III (NCBI) | compare |
| b2501 | ppk | -2.9 | -6.7 | polyphosphate kinase (NCBI) | compare |
| b1642 | slyA | -2.9 | -1.2 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1167 | ymgC | -2.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b3483 | yhhH | -2.9 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2450 | yffS | -2.8 | -1.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b3169 | nusA | -2.8 | -1.9 | transcription elongation factor NusA (NCBI) | compare |
| b0500 | ybbD | -2.8 | -2.1 | hypothetical protein (RefSeq) | compare |
| b1058 | yceO | -2.8 | -1.1 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | -2.7 | -1.9 | shikimate kinase I (NCBI) | compare |
| b0407 | yajC | -2.7 | -3.0 | preprotein translocase subunit YajC (NCBI) | compare |
| b2083 | yegZ | -2.6 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0949 | uup | -2.6 | -7.0 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1176 | minC | -2.6 | -2.5 | septum formation inhibitor (NCBI) | compare |
| b4480 | hdfR | -2.6 | -6.1 | transcriptional regulator HdfR (NCBI) | compare |
| b3101 | yqjF | -2.5 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1518 | lsrG | -2.5 | -1.5 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1882 | cheY | -2.5 | -1.0 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b2435 | amiA | -2.5 | -4.8 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b0060 | polB | -2.5 | -11.3 | DNA polymerase II (NCBI) | conserved |
| b4505 | insX | -2.5 | -1.0 | predicted IS protein (RefSeq) | compare |
| b2080 | b2080 | -2.5 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1273 | yciN | -2.4 | -1.4 | hypothetical protein (NCBI) | compare |
| b2236 | yfaE | -2.4 | -2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2616 | recN | -2.4 | -7.7 | recombination and repair protein (NCBI) | conserved |
| b0610 | rnk | -2.4 | -2.0 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b1114 | mfd | -2.4 | -5.9 | transcription-repair coupling factor (NCBI) | conserved |
| b4246 | pyrL | -2.4 | -2.3 | pyrBI operon leader peptide (NCBI) | compare |
| b4294 | insA-7 | -2.4 | -1.2 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b4402 | yjjY | -2.3 | -1.0 | hypothetical protein (NCBI) | compare |
| b1138 | ymfE | -2.3 | -0.9 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b4570 | lomR | -2.3 | -1.9 | no description | compare |
| b3778 | rep | -2.3 | -7.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4695 | ykgT | -2.2 | -1.6 | no description | compare |
| b3728 | pstS | -2.2 | -2.6 | phosphate transporter subunit (NCBI) | compare |
| b0263 | afuB | -2.2 | -1.8 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b1476 | fdnI | -2.2 | -0.9 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1942 | fliJ | -2.2 | -0.9 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3121 | yhaC | -2.2 | -2.5 | hypothetical protein (NCBI) | compare |
| b0611 | rna | -2.2 | -4.0 | ribonuclease I (NCBI) | compare |
| b4407 | thiS | -2.2 | -1.5 | sulfur carrier protein ThiS (NCBI) | compare |
| b0606 | ahpF | -2.2 | -3.6 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | compare |
| b3727 | pstC | -2.2 | -5.0 | phosphate transporter subunit (NCBI) | compare |
| b3021 | ygiT | -2.2 | -3.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1255 | yciC | -2.1 | -2.7 | hypothetical protein (NCBI) | compare |
| b2259 | pmrD | -2.1 | -1.1 | polymyxin resistance protein B (VIMSS) | compare |
| b3163 | nlpI | -2.1 | -3.5 | hypothetical protein (NCBI) | compare |
| b4163 | glyV | -2.1 | -1.2 | tRNA-Gly (NCBI) | compare |
| b3652 | recG | -2.1 | -8.5 | ATP-dependent DNA helicase (NCBI) | compare |
| b3644 | yicC | -2.1 | -6.0 | hypothetical protein (NCBI) | compare |
| b2431 | b2431 | -2.1 | -6.4 | orf, hypothetical protein (VIMSS) | compare |
| b2642 | yfjW | -2.1 | -2.4 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1182 | hlyE | -2.1 | -2.5 | hemolysin E (VIMSS) | compare |
| b2698 | recX | -2.0 | -1.7 | RecA regulator RecX (NCBI) | compare |
| b1144 | ymfJ | -2.0 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2579 | yfiD | -2.0 | -2.1 | pyruvate formate lyase subunit (NCBI) | compare |
| b0946 | ycbW | -2.0 | -4.8 | orf, hypothetical protein (VIMSS) | conserved |
| b4416 | rybA | -2.0 | -0.8 | unknown RNA (NCBI) | compare |
| b3935 | priA | -2.0 | -2.0 | primosome assembly protein PriA (NCBI) | compare |
| b1446 | ydcY | -2.0 | -1.4 | hypothetical protein (NCBI) | compare |
| b1185 | dsbB | -2.0 | -1.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b2796 | sdaC | -2.0 | -10.3 | predicted serine transporter (NCBI) | compare |
| b4598 | yncL | -2.0 | -1.1 | hypothetical protein (RefSeq) | compare |
| b1293 | sapB | -2.0 | -1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1829 | htpX | -2.0 | -3.4 | heat shock protein HtpX (NCBI) | compare |
| b0145 | dksA | -2.0 | -2.6 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0082 | mraW | -2.0 | -3.5 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1863 | ruvC | -2.0 | -3.1 | Holliday junction resolvase (NCBI) | compare |
| b3977 | tyrU | -2.0 | -0.8 | tRNA-Tyr (NCBI) | compare |
| b0705 | ybfL | -2.0 | -3.2 | putative receptor protein (VIMSS) | compare |
| b2859 | ygeO | -2.0 | -3.3 | hypothetical protein (RefSeq) | compare |
| b1954 | dsrA | -2.0 | -1.5 | regulatory antisense RNA (NCBI) | compare |
| b4414 | tff | -1.9 | -3.2 | unknown RNA (NCBI) | compare |
| b3463 | ftsE | -1.9 | -2.9 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0603 | ybdO | -1.9 | -3.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1382 | ynbE | -1.9 | -1.1 | predicted lipoprotein (NCBI) | compare |
| b0015 | dnaJ | -1.9 | -8.1 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b2930 | yggF | -1.9 | -3.5 | predicted hexoseP phosphatase (NCBI) | compare |
| b3792 | wzxE | -1.9 | -8.2 | O-antigen translocase (NCBI) | compare |
| b1566 | flxA | -1.9 | -2.5 | Qin prophage; predicted protein (NCBI) | compare |
| b0014 | dnaK | -1.9 | -1.6 | molecular chaperone DnaK (NCBI) | compare |
| b3726 | pstA | -1.9 | -5.4 | phosphate transporter subunit (NCBI) | compare |
| b2248 | yfaX | -1.9 | -1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4551 | yheV | -1.9 | -1.1 | hypothetical protein (NCBI) | compare |
| b4487 | yjdP | -1.9 | -4.8 | hypothetical protein (NCBI) | compare |
| b2741 | rpoS | -1.9 | -4.7 | RNA polymerase sigma factor (NCBI) | compare |
| b3462 | ftsX | -1.8 | -3.6 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2938 | speA | -1.8 | -8.3 | arginine decarboxylase (NCBI) | compare |
| b4172 | hfq | -1.8 | -1.7 | RNA-binding protein Hfq (NCBI) | compare |
| b3611 | yibN | -1.8 | -4.6 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b0406 | tgt | -1.8 | -6.2 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1130 | phoP | -1.8 | -5.9 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1497 | b1497 | -1.8 | -3.1 | putative enzyme (VIMSS) | compare |
| b0802 | ybiJ | -1.8 | -1.8 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | -1.8 | -8.1 | essential cell division protein (NCBI) | compare |
| b2652 | ileY | -1.7 | -4.1 | tRNA-Ile (NCBI) | compare |
| b1219 | ychN | -1.7 | -2.6 | hypothetical protein (NCBI) | compare |
| b1753 | ynjA | -1.7 | -1.3 | hypothetical protein (NCBI) | compare |
| b4561 | insM | -1.7 | -2.4 | transposase (RefSeq) | compare |
| b4585 | sroB | -1.7 | -0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b1730 | ydjO | -1.7 | -2.5 | predicted protein (RefSeq) | compare |
| b3839 | tatC | -1.7 | -7.9 | TatABCE protein translocation system subunit (NCBI) | compare |
| b1259 | yciG | -1.7 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3442 | yhhZ | -1.7 | -2.6 | hypothetical protein (NCBI) | compare |
| b0799 | dinG | -1.7 | -5.5 | ATP-dependent DNA helicase (NCBI) | conserved |
| b2945 | endA | -1.7 | -5.1 | DNA-specific endonuclease I (NCBI) | conserved |
| b3613 | yibP | -1.7 | -4.9 | putative membrane protein (VIMSS) | compare |
| b3037 | ygiB | -1.7 | -4.2 | conserved outer membrane protein (RefSeq) | compare |
| b2819 | recD | -1.7 | -4.1 | exonuclease V (RecBCD complex), alpha chain (NCBI) | compare |
| b2058 | wcaB | -1.7 | -0.7 | predicted acyl transferase (NCBI) | compare |
| b0957 | ompA | -1.7 | -3.2 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3651 | trmH | -1.7 | -4.3 | tRNA (Guanosine-2'-O-)-methyltransferase (NCBI) | compare |
| b2330 | yfcB | -1.7 | -2.1 | putative adenine-specific methylase (VIMSS) | compare |
| b2184 | yejH | -1.6 | -6.2 | DNA damage response helicase (yejH or radD) (from data) | conserved |
| b2363 | yfdT | -1.6 | -2.7 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b2110 | yehC | -1.6 | -2.8 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2822 | recC | -1.6 | -2.9 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b1830 | prc | -1.6 | -4.0 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b4389 | radA | -1.6 | -7.0 | predicted repair protein (NCBI) | conserved |
| b0149 | mrcB | -1.6 | -9.0 | penicillin-binding protein 1b (NCBI) | compare |
| b0814 | ompX | -1.6 | -4.2 | outer membrane protein X (NCBI) | compare |
| b3027 | ygiZ | -1.6 | -2.5 | conserved inner membrane protein (NCBI) | compare |
| b2531 | iscR | -1.6 | -1.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1103 | ycfF | -1.6 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1907 | tyrP | -1.6 | -3.3 | tyrosine transporter (NCBI) | compare |
| b1304 | pspA | -1.6 | -2.0 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b2784 | relA | -1.6 | -6.5 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b1143 | ymfI | -1.6 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1861 | ruvA | -1.6 | -1.9 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b0998 | torD | -1.6 | -0.8 | chaperone protein TorD (NCBI) | compare |
| b2968 | yghD | -1.6 | -2.9 | predicted secretion pathway M-type protein, membrane anchored (NCBI) | compare |
| b3725 | pstB | -1.6 | -1.5 | phosphate transporter subunit (NCBI) | compare |
| b0051 | ksgA | -1.6 | -4.9 | dimethyladenosine transferase (NCBI) | compare |
| b0948 | ycbY | -1.6 | -5.7 | predicted methyltransferase (NCBI) | compare |
| b0460 | hha | -1.6 | -5.2 | modulator of gene expression, with H-NS (NCBI) | compare |
| b2366 | dsdA | -1.5 | -4.7 | D-serine dehydratase (NCBI) | compare |
| b2512 | yfgL | -1.5 | -3.4 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3032 | cpdA | -1.5 | -4.4 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b3100 | yqjK | -1.5 | -2.8 | hypothetical protein (NCBI) | compare |
| b1252 | tonB | -1.5 | -2.4 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b2398 | yfeC | -1.5 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2617 | smpA | -1.5 | -2.6 | small membrane protein A (VIMSS) | compare |
| b1434 | ydcN | -1.5 | -1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2952 | yggT | -1.5 | -4.7 | predicted inner membrane protein (NCBI) | compare |
| b4679 | yohP | -1.5 | -3.3 | expressed protein (RefSeq) | compare |
| b0542 | renD | -1.5 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2625 | yfjI | -1.5 | -4.7 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b3206 | npr | -1.5 | -2.8 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3764 | yifE | -1.5 | -4.4 | hypothetical protein (NCBI) | compare |
| b4685 | yrbN | -1.5 | -2.2 | expressed protein (RefSeq) | compare |
| b3017 | sufI | -1.5 | -8.0 | repressor protein for FtsI (NCBI) | compare |
| b2195 | ccmG | -1.5 | -1.3 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1594 | dgsA | -1.5 | -3.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1792 | yeaO | -1.5 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0520 | ylbF | -1.5 | -3.6 | hypothetical protein (NCBI) | compare |
| b1749 | xthA | -1.5 | -2.9 | exonuclease III (NCBI) | compare |
| b1868 | yecE | -1.5 | -2.4 | hypothetical protein (NCBI) | compare |
| b1811 | yoaH | -1.5 | -1.8 | hypothetical protein (NCBI) | compare |
| b2699 | recA | -1.4 | -1.0 | recombinase A (NCBI) | compare |
| b1399 | paaX | -1.4 | -1.8 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b0118 | acnB | -1.4 | -2.1 | aconitate hydratase (NCBI) | compare |
| b0990 | cspG | -1.4 | -1.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0471 | ybaB | -1.4 | -1.4 | hypothetical protein (NCBI) | compare |
| b2830 | nudH | -1.4 | -1.3 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1305 | pspB | -1.4 | -1.7 | phage shock protein B (NCBI) | compare |
| b0523 | purE | -1.4 | -2.0 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b1187 | fadR | -1.4 | -2.8 | fatty acid metabolism regulator (NCBI) | compare |
| b4450 | arcZ | -1.4 | -1.9 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1766 | sppA | -1.4 | -3.0 | protease IV (signal peptide peptidase) (NCBI) | compare |
| b1499 | ydeO | -1.4 | -2.0 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b4410 | ecnA | -1.4 | -0.7 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b3466 | yhhL | -1.4 | -3.3 | conserved inner membrane protein (NCBI) | compare |
| b3755 | yieP | -1.4 | -4.1 | predicted transcriptional regulator (NCBI) | compare |
| b2659 | b2659 | -1.4 | -1.5 | orf, hypothetical protein (VIMSS) | compare |