Experiment set2IT043 for Variovorax sp. OAS795

Compare to:

Glucuronamide carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS26160 -4.7 -1.7 nuclear transport factor 2 family protein compare
ABID97_RS23425 -4.3 -3.0 tRNA-Pro compare
ABID97_RS17265 -4.1 -2.9 two-component system response regulator OmpR compare
ABID97_RS11290 -3.9 -1.4 DNA repair protein RadC compare
ABID97_RS09180 -3.8 -4.6 DNA polymerase I compare
ABID97_RS17270 -3.8 -5.8 ATP-binding protein compare
ABID97_RS25015 -3.8 -3.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS12575 -3.4 -1.7 ATP-grasp domain-containing protein compare
ABID97_RS16175 -3.1 -2.1 response regulator transcription factor compare
ABID97_RS16985 -2.9 -4.3 transcriptional repressor LexA compare
ABID97_RS05250 -2.8 -8.7 anthranilate synthase component I compare
ABID97_RS23225 -2.8 -12.1 glutamate synthase-related protein compare
ABID97_RS00255 -2.8 -9.6 type IV pilus twitching motility protein PilT compare
ABID97_RS18495 -2.7 -1.4 DUF2889 domain-containing protein compare
ABID97_RS27370 -2.5 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS16785 -2.5 -2.4 transporter compare
ABID97_RS23915 -2.4 -4.1 heme o synthase compare
ABID97_RS04500 -2.4 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS16065 -2.4 -1.8 PDR/VanB family oxidoreductase compare
ABID97_RS13990 -2.3 -4.7 amino acid aminotransferase compare
ABID97_RS02455 -2.3 -2.5 nucleotidyltransferase family protein compare
ABID97_RS05280 -2.2 -2.3 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS07245 -2.2 -1.4 HIT family protein compare
ABID97_RS24895 -2.1 -3.3 hypothetical protein compare
ABID97_RS22430 -2.1 -2.6 cystathionine beta-lyase compare
ABID97_RS13860 -2.1 -5.0 hypothetical protein compare
ABID97_RS22620 -2.1 -4.7 response regulator transcription factor compare
ABID97_RS29270 -2.0 -1.0 cytochrome b561 domain-containing protein compare
ABID97_RS10885 -2.0 -4.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS02600 -2.0 -5.6 homoserine O-acetyltransferase compare
ABID97_RS16595 -1.9 -5.4 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS17590 -1.9 -8.0 endopeptidase La compare
ABID97_RS02115 -1.9 -8.7 PilW family protein compare
ABID97_RS02120 -1.9 -6.8 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS16470 -1.9 -2.1 translational GTPase TypA compare
ABID97_RS03680 -1.8 -5.6 lysophospholipid transporter LplT compare
ABID97_RS15995 -1.8 -3.6 PilZ domain-containing protein compare
ABID97_RS02110 -1.8 -10.4 type IV pilus modification protein PilV compare
ABID97_RS02125 -1.8 -13.1 PilC/PilY family type IV pilus protein compare
ABID97_RS08425 -1.8 -3.7 tryptophan synthase subunit alpha compare
ABID97_RS23525 -1.8 -1.6 urease subunit beta compare
ABID97_RS09315 -1.8 -1.3 substrate-binding domain-containing protein compare
ABID97_RS22625 -1.8 -9.2 HAMP domain-containing sensor histidine kinase compare
ABID97_RS27865 -1.8 -1.5 alpha/beta hydrolase family protein compare
ABID97_RS01565 -1.7 -8.0 DNA starvation/stationary phase protection protein compare
ABID97_RS08435 -1.7 -2.0 phosphoribosylanthranilate isomerase compare
ABID97_RS21150 -1.7 -5.2 FAD-dependent oxidoreductase compare
ABID97_RS24690 -1.7 -6.4 methyl-accepting chemotaxis protein compare
ABID97_RS24170 -1.7 -3.7 ATP-binding protein compare
ABID97_RS22705 -1.7 -6.8 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS29345 -1.7 -1.9 IclR family transcriptional regulator compare
ABID97_RS28230 -1.6 -1.2 lipid-transfer protein compare
ABID97_RS24705 -1.6 -3.8 response regulator compare
ABID97_RS02460 -1.6 -8.6 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS09750 -1.6 -0.8 hypothetical protein compare
ABID97_RS18080 -1.6 -1.3 alpha/beta hydrolase compare
ABID97_RS23430 -1.6 -7.0 type IV-A pilus assembly ATPase PilB compare
ABID97_RS23440 -1.6 -5.6 A24 family peptidase compare
ABID97_RS15665 -1.6 -5.1 [protein-PII] uridylyltransferase compare
ABID97_RS23435 -1.6 -7.9 type II secretion system F family protein compare
ABID97_RS01840 -1.6 -7.8 DUF1631 family protein compare
ABID97_RS02135 -1.6 -4.1 GspH/FimT family pseudopilin compare
ABID97_RS08445 -1.5 -4.5 FimV/HubP family polar landmark protein compare
ABID97_RS14285 -1.5 -3.8 phosphoribosyltransferase compare
ABID97_RS06345 -1.5 -3.2 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS14625 -1.5 -2.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS02130 -1.5 -7.1 type IV pilin protein compare
ABID97_RS08195 -1.5 -3.4 histidine kinase compare
ABID97_RS17330 -1.5 -1.2 adenosylcobinamide-GDP ribazoletransferase compare
ABID97_RS20940 -1.5 -1.1 CBS domain-containing protein compare
ABID97_RS06415 -1.5 -6.5 sigma-54 dependent transcriptional regulator compare
ABID97_RS23650 -1.5 -9.2 serine/threonine-protein kinase compare
ABID97_RS04480 -1.5 -1.9 magnesium/cobalt transporter CorA compare
ABID97_RS23380 -1.5 -6.4 lytic transglycosylase domain-containing protein compare
ABID97_RS16210 -1.4 -1.3 cytochrome-c oxidase, cbb3-type subunit III compare
ABID97_RS23270 -1.4 -5.8 pilus assembly protein PilP compare
ABID97_RS06175 -1.4 -9.8 STAS domain-containing protein compare
ABID97_RS06575 -1.4 -3.4 trehalose-phosphatase compare
ABID97_RS09630 -1.4 -1.5 hypothetical protein compare
ABID97_RS24730 -1.4 -2.0 Fis family transcriptional regulator compare
ABID97_RS22860 -1.4 -1.7 MurR/RpiR family transcriptional regulator compare
ABID97_RS26370 -1.4 -1.1 PIN domain-containing protein compare
ABID97_RS10500 -1.3 -1.3 LysR family transcriptional regulator compare
ABID97_RS25900 -1.3 -1.8 ABC transporter permease compare
ABID97_RS23910 -1.3 -5.0 SCO family protein compare
ABID97_RS23265 -1.3 -4.9 type IV pilus secretin PilQ compare
ABID97_RS23230 -1.3 -6.4 transposase compare
ABID97_RS02145 -1.3 -4.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS12180 -1.3 -1.6 hypothetical protein compare
ABID97_RS09825 -1.3 -1.1 hypothetical protein compare
ABID97_RS14665 -1.3 -2.5 UvrD-helicase domain-containing protein compare
ABID97_RS10365 -1.3 -4.3 5-dehydro-4-deoxyglucarate dehydratase compare
ABID97_RS01725 -1.3 -0.9 META domain-containing protein compare
ABID97_RS08440 -1.3 -4.2 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS23275 -1.3 -4.4 type 4a pilus biogenesis protein PilO compare
ABID97_RS14975 -1.3 -1.9 hypothetical protein compare
ABID97_RS11235 -1.2 -1.6 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS07405 -1.2 -5.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS12150 -1.2 -1.4 hypothetical protein compare
ABID97_RS19610 -1.2 -1.0 putative hydro-lyase compare
ABID97_RS01825 -1.2 -7.8 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS01120 -1.2 -1.1 citrate synthase compare
ABID97_RS23645 -1.2 -1.5 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS15635 -1.2 -3.6 peptide deformylase compare
ABID97_RS19930 -1.2 -1.0 DUF2160 domain-containing protein compare
ABID97_RS20905 -1.2 -1.0 hypothetical protein compare
ABID97_RS28635 -1.2 -3.4 IclR family transcriptional regulator compare
ABID97_RS13420 -1.2 -1.3 aromatic ring-hydroxylating dioxygenase subunit alpha compare
ABID97_RS23220 -1.2 -1.1 glutamate synthase subunit beta compare
ABID97_RS09935 -1.2 -4.9 hypothetical protein compare
ABID97_RS23280 -1.2 -2.9 PilN domain-containing protein compare
ABID97_RS28080 -1.2 -0.7 YbaN family protein compare
ABID97_RS02140 -1.2 -3.8 sugar transferase compare
ABID97_RS01335 -1.2 -1.1 flavin-dependent oxidoreductase compare
ABID97_RS17670 -1.2 -3.6 alpha/beta hydrolase compare
ABID97_RS05855 -1.2 -7.4 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABID97_RS28335 -1.2 -0.9 FAD-dependent oxidoreductase compare
ABID97_RS24045 -1.1 -1.6 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS17225 -1.1 -5.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS21770 -1.1 -5.6 aminopeptidase N compare
ABID97_RS16600 -1.1 -3.3 CysB family HTH-type transcriptional regulator compare
ABID97_RS25895 -1.1 -0.7 ABC transporter permease compare
ABID97_RS02200 -1.1 -8.2 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS08360 -1.1 -3.1 DUF4845 domain-containing protein compare
ABID97_RS23285 -1.1 -5.3 pilus assembly protein PilM compare
ABID97_RS20615 -1.1 -3.4 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS29015 -1.1 -0.8 transcriptional regulator GcvA compare
ABID97_RS23775 -1.1 -3.9 ABC transporter permease compare
ABID97_RS03640 -1.1 -3.3 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS07430 -1.0 -4.5 pantoate--beta-alanine ligase compare
ABID97_RS15695 -1.0 -2.9 peptide-methionine (R)-S-oxide reductase MsrB compare
ABID97_RS25745 -1.0 -1.2 dipeptide ABC transporter ATP-binding protein compare
ABID97_RS04520 -1.0 -2.1 MotA/TolQ/ExbB proton channel family protein compare
ABID97_RS07855 -1.0 -1.3 ABC transporter ATP-binding protein compare
ABID97_RS07775 -1.0 -2.7 phosphoribosylglycinamide formyltransferase compare
ABID97_RS02765 -1.0 -2.8 hypothetical protein compare
ABID97_RS03125 -1.0 -5.0 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS07630 -1.0 -1.9 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS09610 -1.0 -1.3 Cro/CI family transcriptional regulator compare
ABID97_RS25730 -1.0 -1.2 ABC transporter permease compare
ABID97_RS01755 -1.0 -3.7 pyruvate kinase compare
ABID97_RS06830 -1.0 -1.2 aldehyde dehydrogenase family protein compare
ABID97_RS12045 -1.0 -2.1 arsenical resistance protein ArsH compare
ABID97_RS15610 -1.0 -1.4 hypothetical protein compare
ABID97_RS06450 -1.0 -1.8 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS23780 -1.0 -3.6 ABC transporter permease compare
ABID97_RS16690 -1.0 -2.7 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS04935 -1.0 -5.1 catalase HPII compare
ABID97_RS27015 -1.0 -0.9 DoxX family protein compare
ABID97_RS10340 -1.0 -1.2 TRAP transporter substrate-binding protein compare
ABID97_RS24580 -1.0 -1.1 2-dehydropantoate 2-reductase compare
ABID97_RS13190 -1.0 -2.9 ABC transporter substrate-binding protein compare
ABID97_RS17050 -1.0 -0.9 RlmE family RNA methyltransferase compare
ABID97_RS29235 -1.0 -2.2 phosphotransferase compare
ABID97_RS28395 -1.0 -1.1 LysR substrate-binding domain-containing protein compare
ABID97_RS27055 -1.0 -0.6 MFS transporter compare
ABID97_RS00335 -0.9 -3.6 c-type cytochrome compare
ABID97_RS02770 -0.9 -0.9 exosortase Q compare
ABID97_RS06315 -0.9 -5.1 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS26050 -0.9 -2.0 IclR family transcriptional regulator compare
ABID97_RS11295 -0.9 -1.8 OST-HTH/LOTUS domain-containing protein compare
ABID97_RS25935 -0.9 -1.4 Lrp/AsnC family transcriptional regulator compare
ABID97_RS10735 -0.9 -2.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABID97_RS27630 -0.9 -1.7 AraC family transcriptional regulator compare
ABID97_RS07840 -0.9 -3.5 branched-chain amino acid ABC transporter permease compare
ABID97_RS06180 -0.9 -2.3 ATP-dependent protease subunit HslV compare
ABID97_RS25130 -0.9 -3.6 carboxyl transferase domain-containing protein compare
ABID97_RS02945 -0.9 -3.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABID97_RS05810 -0.9 -3.0 TRAP transporter small permease compare
ABID97_RS23785 -0.9 -3.7 ABC transporter ATP-binding protein compare
ABID97_RS23550 -0.9 -1.1 urease accessory UreF family protein compare
ABID97_RS13815 -0.9 -1.2 phage major capsid protein compare
ABID97_RS09620 -0.9 -1.7 hypothetical protein compare
ABID97_RS00440 -0.9 -1.2 ROK family protein compare
ABID97_RS03915 -0.9 -2.1 DUF4124 domain-containing protein compare
ABID97_RS29375 -0.9 -0.8 VOC family protein compare
ABID97_RS17135 -0.9 -5.6 RIP metalloprotease RseP compare
ABID97_RS17255 -0.9 -1.8 SIMPL domain-containing protein compare
ABID97_RS07355 -0.9 -4.2 CHASE3 domain-containing protein compare
ABID97_RS13865 -0.9 -2.9 hypothetical protein compare
ABID97_RS02855 -0.9 -3.6 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS05020 -0.9 -0.8 hypothetical protein compare
ABID97_RS12140 -0.9 -4.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS26080 -0.9 -1.2 LytTR family DNA-binding domain-containing protein compare
ABID97_RS16195 -0.9 -1.1 hypothetical protein compare
ABID97_RS07845 -0.9 -4.6 ABC transporter ATP-binding protein compare
ABID97_RS08390 -0.9 -3.5 beta-N-acetylhexosaminidase compare
ABID97_RS01280 -0.9 -1.3 flavodoxin family protein compare
ABID97_RS05440 -0.9 -3.0 hypothetical protein compare
ABID97_RS14985 -0.9 -0.7 hypothetical protein compare
ABID97_RS26680 -0.9 -1.0 AAA family ATPase compare
ABID97_RS08200 -0.9 -3.2 LytTR family DNA-binding domain-containing protein compare
ABID97_RS08710 -0.9 -3.0 polynucleotide adenylyltransferase PcnB compare
ABID97_RS16910 -0.9 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS06365 -0.9 -0.8 TlpA disulfide reductase family protein compare
ABID97_RS06825 -0.9 -1.3 LysR family transcriptional regulator compare
ABID97_RS27535 -0.9 -0.7 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS23655 -0.9 -2.8 YicC/YloC family endoribonuclease compare
ABID97_RS02510 -0.8 -7.0 NADP-dependent malic enzyme compare
ABID97_RS19030 -0.8 -1.5 tripartite tricarboxylate transporter substrate binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glucuronamide in Variovorax sp. OAS795

For carbon source Glucuronamide across organisms