| | gene | name | fitness | t score | description | |
|---|
| b0472 | recR | -5.5 | -5.3 | recombination protein RecR (NCBI) | conserved |
| b1913 | uvrC | -4.9 | -5.8 | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | conserved |
| b2565 | recO | -4.5 | -4.4 | DNA repair protein RecO (NCBI) | conserved |
| b3700 | recF | -4.2 | -8.0 | recombination protein F (NCBI) | conserved |
| b0779 | uvrB | -4.2 | -5.7 | excinuclease ABC subunit B (NCBI) | conserved |
| b2620 | smpB | -3.7 | -2.5 | SsrA-binding protein (NCBI) | compare |
| b2531 | iscR | -3.6 | -2.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1848 | yebG | -3.6 | -2.0 | conserved protein regulated by LexA (NCBI) | compare |
| b2567 | rnc | -3.6 | -2.4 | ribonuclease III (NCBI) | compare |
| b0949 | uup | -3.6 | -7.2 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1861 | ruvA | -3.5 | -2.4 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b3813 | uvrD | -3.5 | -14.0 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b2501 | ppk | -3.5 | -8.2 | polyphosphate kinase (NCBI) | compare |
| b4058 | uvrA | -3.4 | -15.5 | excinuclease ABC subunit A (NCBI) | conserved |
| b2910 | zapA | -3.3 | -6.5 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1863 | ruvC | -3.2 | -4.2 | Holliday junction resolvase (NCBI) | compare |
| b3169 | nusA | -3.1 | -2.9 | transcription elongation factor NusA (NCBI) | compare |
| b4172 | hfq | -2.9 | -2.0 | RNA-binding protein Hfq (NCBI) | compare |
| b3387 | dam | -2.9 | -12.0 | DNA adenine methylase (NCBI) | compare |
| b1860 | ruvB | -2.8 | -2.6 | Holliday junction DNA helicase B (NCBI) | compare |
| b3121 | yhaC | -2.7 | -3.1 | hypothetical protein (NCBI) | compare |
| b4685 | yrbN | -2.7 | -3.1 | expressed protein (RefSeq) | compare |
| b1175 | minD | -2.6 | -5.8 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b2830 | nudH | -2.6 | -1.7 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3463 | ftsE | -2.6 | -3.0 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4175 | hflC | -2.5 | -9.3 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b4174 | hflK | -2.4 | -9.5 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2808 | gcvA | -2.4 | -5.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0145 | dksA | -2.4 | -3.5 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1114 | mfd | -2.4 | -7.1 | transcription-repair coupling factor (NCBI) | conserved |
| b3792 | wzxE | -2.3 | -9.1 | O-antigen translocase (NCBI) | compare |
| b2616 | recN | -2.3 | -8.8 | recombination and repair protein (NCBI) | conserved |
| b3725 | pstB | -2.3 | -1.5 | phosphate transporter subunit (NCBI) | compare |
| b3933 | ftsN | -2.2 | -10.7 | essential cell division protein (NCBI) | compare |
| b2699 | recA | -2.2 | -1.5 | recombinase A (NCBI) | compare |
| b3728 | pstS | -2.2 | -4.1 | phosphate transporter subunit (NCBI) | compare |
| b3613 | yibP | -2.2 | -5.7 | putative membrane protein (VIMSS) | compare |
| b0053 | surA | -2.2 | -3.6 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b2330 | yfcB | -2.2 | -2.8 | putative adenine-specific methylase (VIMSS) | compare |
| b3390 | aroK | -2.1 | -2.4 | shikimate kinase I (NCBI) | compare |
| b0890 | ftsK | -2.1 | -6.6 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b4239 | treC | -2.1 | -5.0 | trehalose-6-P hydrolase (NCBI) | compare |
| b3652 | recG | -2.1 | -9.0 | ATP-dependent DNA helicase (NCBI) | compare |
| b2820 | recB | -2.1 | -1.4 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3778 | rep | -2.1 | -8.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3839 | tatC | -2.1 | -9.3 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3462 | ftsX | -2.0 | -4.6 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4375 | prfC | -2.0 | -6.2 | peptide chain release factor 3 (NCBI) | compare |
| b0439 | lon | -1.9 | -5.0 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0705 | ybfL | -1.9 | -4.1 | putative receptor protein (VIMSS) | compare |
| b3290 | trkA | -1.9 | -3.5 | potassium transporter peripheral membrane component (NCBI) | compare |
| b1176 | minC | -1.9 | -3.5 | septum formation inhibitor (NCBI) | compare |
| b4146 | yjeK | -1.9 | -2.8 | predicted lysine aminomutase (NCBI) | compare |
| b3261 | fis | -1.8 | -3.4 | DNA-binding protein Fis (NCBI) | compare |
| b4389 | radA | -1.8 | -7.9 | predicted repair protein (NCBI) | conserved |
| b1576 | ydfD | -1.8 | -3.2 | Qin prophage; predicted protein (NCBI) | compare |
| b4201 | priB | -1.8 | -2.8 | primosomal replication protein N (NCBI) | compare |
| b3726 | pstA | -1.8 | -6.2 | phosphate transporter subunit (NCBI) | compare |
| b3727 | pstC | -1.8 | -5.6 | phosphate transporter subunit (NCBI) | compare |
| b2314 | dedD | -1.8 | -3.5 | putative lipoprotein (VIMSS) | compare |
| b3341 | rpsG | -1.8 | -1.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b3163 | nlpI | -1.8 | -4.5 | hypothetical protein (NCBI) | compare |
| b2784 | relA | -1.7 | -7.6 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b2819 | recD | -1.7 | -6.2 | exonuclease V (RecBCD complex), alpha chain (NCBI) | compare |
| b0149 | mrcB | -1.7 | -10.1 | penicillin-binding protein 1b (NCBI) | compare |
| b2184 | yejH | -1.7 | -7.1 | DNA damage response helicase (yejH or radD) (from data) | conserved |
| b3706 | trmE | -1.7 | -5.4 | tRNA modification GTPase (NCBI) | compare |
| b0737 | tolQ | -1.7 | -3.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2822 | recC | -1.7 | -4.9 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b3741 | gidA | -1.7 | -6.3 | glucose-inhibited division protein A (NCBI) | compare |
| b2945 | endA | -1.6 | -5.7 | DNA-specific endonuclease I (NCBI) | conserved |
| b3017 | sufI | -1.6 | -9.1 | repressor protein for FtsI (NCBI) | compare |
| b3961 | oxyR | -1.6 | -8.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2617 | smpA | -1.6 | -3.1 | small membrane protein A (VIMSS) | compare |
| b3764 | yifE | -1.6 | -4.5 | hypothetical protein (NCBI) | compare |
| b1642 | slyA | -1.6 | -2.0 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1257 | yciE | -1.6 | -3.2 | hypothetical protein (NCBI) | compare |
| b0471 | ybaB | -1.6 | -1.5 | hypothetical protein (NCBI) | compare |
| b2642 | yfjW | -1.5 | -2.2 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1167 | ymgC | -1.5 | -2.3 | hypothetical protein (NCBI) | compare |
| b0782 | moaB | -1.5 | -2.0 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b0015 | dnaJ | -1.5 | -7.5 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1084 | rne | -1.5 | -4.0 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b0222 | lpcA | -1.5 | -2.8 | phosphoheptose isomerase (NCBI) | compare |
| b2894 | xerD | -1.5 | -1.6 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b4443 | gcvB | -1.5 | -1.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4460 | araH | -1.5 | -2.7 | fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b0500 | ybbD | -1.5 | -1.7 | hypothetical protein (RefSeq) | compare |
| b3068 | ygjF | -1.5 | -2.7 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b0118 | acnB | -1.5 | -2.6 | aconitate hydratase (NCBI) | compare |
| b3935 | priA | -1.5 | -2.9 | primosome assembly protein PriA (NCBI) | compare |
| b0407 | yajC | -1.4 | -3.0 | preprotein translocase subunit YajC (NCBI) | compare |
| b1545 | pinQ | -1.4 | -1.4 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b4480 | hdfR | -1.4 | -4.9 | transcriptional regulator HdfR (NCBI) | compare |
| b1040 | csgD | -1.4 | -4.3 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1129 | phoQ | -1.4 | -6.0 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1007 | b1007 | -1.4 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1184 | umuC | -1.4 | -4.7 | DNA polymerase V subunit UmuC (NCBI) | conserved |
| b3644 | yicC | -1.4 | -4.9 | hypothetical protein (NCBI) | compare |
| b2343 | b2343 | -1.4 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1187 | fadR | -1.4 | -2.9 | fatty acid metabolism regulator (NCBI) | compare |
| b1001 | yccE | -1.4 | -1.8 | hypothetical protein (NCBI) | compare |
| b3791 | rffA | -1.3 | -6.3 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3162 | deaD | -1.3 | -3.9 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2576 | srmB | -1.3 | -3.1 | ATP-dependent RNA helicase (NCBI) | compare |
| b2110 | yehC | -1.3 | -3.6 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b1183 | umuD | -1.3 | -1.6 | DNA polymerase V, subunit D (NCBI) | compare |
| b0948 | ycbY | -1.3 | -4.6 | predicted methyltransferase (NCBI) | compare |
| b1085 | b1085 | -1.3 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2431 | b2431 | -1.3 | -5.4 | orf, hypothetical protein (VIMSS) | compare |
| b2698 | recX | -1.3 | -1.9 | RecA regulator RecX (NCBI) | compare |
| b3636 | rpmG | -1.3 | -1.3 | 50S ribosomal protein L33 (NCBI) | compare |
| b4041 | plsB | -1.3 | -1.8 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2946 | yggJ | -1.3 | -4.1 | orf, hypothetical protein (VIMSS) | compare |
| b0726 | sucA | -1.3 | -2.8 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b4171 | miaA | -1.3 | -4.5 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4177 | purA | -1.2 | -2.4 | adenylosuccinate synthetase (NCBI) | compare |
| b0142 | folK | -1.2 | -1.1 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2938 | speA | -1.2 | -7.0 | arginine decarboxylase (NCBI) | compare |
| b2650 | ypjC | -1.2 | -2.1 | hypothetical protein (RefSeq) | compare |
| b2181 | yejG | -1.2 | -3.9 | hypothetical protein (NCBI) | compare |
| b0920 | ycbC | -1.2 | -3.4 | conserved inner membrane protein (NCBI) | compare |
| b0082 | mraW | -1.2 | -2.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3183 | obgE | -1.2 | -1.5 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0605 | ahpC | -1.2 | -3.8 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b1763 | topB | -1.2 | -2.9 | DNA topoisomerase III (NCBI) | compare |
| b3863 | polA | -1.1 | -1.0 | DNA polymerase I (NCBI) | compare |
| b1279 | yciS | -1.1 | -1.3 | conserved inner membrane protein (NCBI) | compare |
| b0685 | ybfE | -1.1 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2629 | yfjM | -1.1 | -1.9 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b3483 | yhhH | -1.1 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2055 | wcaE | -1.1 | -1.6 | predicted glycosyl transferase (NCBI) | compare |
| b1754 | b1754 | -1.1 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0603 | ybdO | -1.1 | -2.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2809 | b2809 | -1.1 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4426 | isrA | -1.1 | -1.7 | unknown RNA (NCBI) | compare |
| b0946 | ycbW | -1.1 | -3.3 | orf, hypothetical protein (VIMSS) | conserved |
| b2393 | nupC | -1.1 | -4.1 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b1536 | ydeI | -1.1 | -3.8 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | -1.1 | -1.1 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b4373 | rimI | -1.1 | -1.8 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4436 | ryeC | -1.1 | -1.1 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1728 | ydjM | -1.1 | -2.3 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b1269 | rluB | -1.1 | -2.4 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b4202 | rpsR | -1.1 | -1.7 | 30S ribosomal protein S18 (NCBI) | compare |
| b1305 | pspB | -1.1 | -1.4 | phage shock protein B (NCBI) | compare |
| b2847 | yqeI | -1.0 | -4.9 | predicted transcriptional regulator (NCBI) | compare |
| b1837 | yebW | -1.0 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4590 | ybfK | -1.0 | -3.5 | hypothetical protein (RefSeq) | compare |
| b1130 | phoP | -1.0 | -4.6 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1095 | fabF | -1.0 | -4.5 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b4155 | yjeA | -1.0 | -1.1 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b2569 | lepA | -1.0 | -3.2 | GTP-binding protein LepA (NCBI) | compare |
| b4253 | yjgL | -1.0 | -4.8 | orf, hypothetical protein (VIMSS) | compare |
| b2796 | sdaC | -1.0 | -6.8 | predicted serine transporter (NCBI) | compare |
| b1259 | yciG | -1.0 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2934 | cmtB | -1.0 | -2.2 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b4497 | yeeL | -1.0 | -3.6 | no description | compare |
| b0418 | pgpA | -1.0 | -3.3 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b0060 | polB | -1.0 | -6.1 | DNA polymerase II (NCBI) | conserved |
| b3405 | ompR | -1.0 | -3.4 | osmolarity response regulator (NCBI) | compare |
| b2011 | sbcB | -1.0 | -4.5 | exonuclease I (NCBI) | compare |
| b1551 | b1551 | -1.0 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1830 | prc | -1.0 | -3.6 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0406 | tgt | -1.0 | -4.4 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b3651 | trmH | -1.0 | -2.9 | tRNA (Guanosine-2'-O-)-methyltransferase (NCBI) | compare |
| b2652 | ileY | -1.0 | -3.3 | tRNA-Ile (NCBI) | compare |
| b0279 | yagM | -1.0 | -3.9 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b4410 | ecnA | -1.0 | -1.0 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b0630 | lipB | -1.0 | -1.7 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1497 | b1497 | -0.9 | -2.5 | putative enzyme (VIMSS) | compare |
| b1954 | dsrA | -0.9 | -1.8 | regulatory antisense RNA (NCBI) | compare |
| b0606 | ahpF | -0.9 | -3.9 | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | compare |
| b2741 | rpoS | -0.9 | -3.6 | RNA polymerase sigma factor (NCBI) | compare |
| b4438 | cyaR | -0.9 | -1.5 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1074 | flgC | -0.9 | -1.4 | flagellar basal-body rod protein C (NCBI) | compare |
| b0798 | ybiA | -0.9 | -1.5 | hypothetical protein (NCBI) | compare |
| b1290 | sapF | -0.9 | -1.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1409 | ynbB | -0.9 | -3.0 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b4577 | sgrS | -0.9 | -1.4 | small antisense RNA (NCBI) | compare |
| b2859 | ygeO | -0.9 | -2.3 | hypothetical protein (RefSeq) | compare |
| b2893 | dsbC | -0.9 | -3.0 | protein disulfide isomerase II (NCBI) | compare |
| b2937 | speB | -0.9 | -4.3 | agmatinase (NCBI) | compare |
| b3811 | xerC | -0.9 | -1.8 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b0113 | pdhR | -0.9 | -2.8 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b2892 | recJ | -0.9 | -5.0 | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | conserved |
| b2853 | ygeI | -0.9 | -2.2 | hypothetical protein (NCBI) | compare |
| b4552 | yrhC | -0.9 | -1.5 | no description | compare |
| b0143 | pcnB | -0.9 | -3.9 | poly(A) polymerase I (VIMSS) | compare |
| b1063 | yceB | -0.9 | -1.8 | predicted lipoprotein (NCBI) | compare |
| b4702 | mgtL | -0.9 | -2.1 | regulatory leader peptide for mgtA (NCBI) | compare |
| b2811 | ygdK | -0.9 | -2.5 | predicted Fe-S metabolism protein (NCBI) | compare |
| b4234 | yjgA | -0.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b3082 | ygjM | -0.9 | -1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3838 | tatB | -0.9 | -3.4 | sec-independent translocase (NCBI) | compare |
| b1907 | tyrP | -0.9 | -3.7 | tyrosine transporter (NCBI) | compare |
| b3609 | secB | -0.9 | -2.0 | export protein SecB (NCBI) | compare |
| b1058 | yceO | -0.9 | -1.0 | hypothetical protein (NCBI) | compare |
| b1749 | xthA | -0.9 | -2.5 | exonuclease III (NCBI) | compare |
| b1194 | ycgR | -0.9 | -2.1 | protein involved in flagellar function (NCBI) | compare |