Experiment set2IT042 for Agrobacterium fabrum C58

Compare to:

D-Sorbitol carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.4 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -5.7 -4.0 anthranilate phosphoribosyltransferase compare
Atu1850 -5.4 -3.7 phosphoribosylformylglycinamidine synthetase II compare
Atu0038 -5.3 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1141 -5.3 -3.6 Phosphoribosylglycinamide synthetase compare
Atu2264 -5.0 -4.9 2-isopropylmalate synthase compare
Atu2289 -4.9 -8.9 anthranilate synthase component I and II compare
Atu2709 -4.9 -10.5 3-isopropylmalate dehydratase, large subunit compare
Atu0486 -4.9 -3.4 dihydroorotate dehydrogenase compare
Atu2036 -4.8 -4.7 acetolactate synthase III, large subunit compare
Atu0432 -4.8 -4.7 O-succinylhomoserine sulfhydrylase compare
Atu1588 -4.7 -4.6 homoserine dehydrogenase compare
Atu0099 -4.6 -6.3 prephenate dehydratase compare
Atu1308 -4.6 -5.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1205 -4.6 -7.6 threonine dehydratase compare
Atu1075 -4.5 -3.1 amidophosphoribosyltransferase compare
Atu2791 -4.5 -5.4 3-isopropylmalate dehydrogenase compare
Atu2726 -4.4 -13.7 pyruvate carboxylase compare
Atu0401 -4.4 -6.1 fructokinase compare
Atu0298 -4.4 -3.0 orotidine 5 compare
Atu1844 -4.3 -3.0 Phosphoribosylformylglycinamidine synthetase compare
Atu3754 -4.2 -7.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -4.2 -5.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3706 -4.1 -4.9 D-3-phosphoglycerate dehydrogenase compare
Atu0434 -4.1 -2.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3482 -4.0 -7.6 pantoate--beta-alanine ligase compare
Atu2040 -3.9 -2.7 phosphoserine phosphatase compare
Atu1307 -3.9 -5.3 dihydroorotase compare
Atu3755 -3.7 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3707 -3.6 -2.5 phosphoserine aminotransferase compare
Atu0400 -3.6 -3.5 orotate phosphoribosyltransferase compare
Atu1688 -3.6 -2.5 indole-3-glycerol-phosphate synthase compare
Atu0537 -3.6 -2.5 histidinol dehydrogenase compare
Atu2790 -3.6 -2.3 3-isopropylmalate dehydratase, small subunit compare
Atu0679 -3.5 -4.2 ATP phosphoribosyltransferase compare
Atu3885 -3.5 -5.8 inositol monophosphatase compare
Atu0346 -3.4 -3.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1359 -3.4 -1.6 dnaK deletion suppressor protein compare
Atu0678 -3.4 -2.4 histidyl-tRNA synthetase compare
Atu1685 -3.4 -1.6 hypothetical protein compare
Atu0399 -3.4 -4.0 dihydroorotase compare
Atu2015 -3.2 -10.9 aminotransferase compare
Atu0017 -3.2 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3483 -3.2 -6.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1845 -3.1 -3.0 phosphoribosylformylglycinamidine synthase I compare
Atu4318 -3.1 -8.0 xylitol dehydrogenase conserved
Atu2718 -3.1 -5.6 homoserine O-succinyltransferase compare
Atu3739 -2.9 -3.3 phosphoglycerate kinase compare
Atu1446 -2.8 -1.9 two component response regulator compare
Atu2650 -2.4 -8.6 glycerol-3-phosphate dehydrogenase compare
Atu3783 -2.4 -12.4 glutamate synthase subunit beta compare
Atu4616 -2.3 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu3784 -2.3 -15.8 glutamate synthase large subunit compare
Atu0043 -2.3 -1.6 imidazoleglycerol-phosphate dehydratase compare
Atu0647 -2.3 -4.2 phosphoribosylamine--glycine ligase compare
Atu0041 -2.3 -1.5 glutamine amidotransferase compare
Atu1030 -2.2 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5540 -2.1 -1.0 hypothetical protein compare
Atu0039 -2.1 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu4098 -2.1 -9.3 quinolinate synthetase compare
Atu1456 -2.1 -7.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu4613 -2.0 -10.1 glycosyltransferase compare
Atu0115 -1.9 -1.3 hypothetical protein compare
Atu4617 -1.9 -7.9 dTDP-D-glucose-4,6-dehydratase compare
Atu5513 -1.9 -1.3 cold shock protein compare
Atu8203 -1.9 -2.2 hypothetical protein compare
Atu1219 -1.8 -1.2 hypothetical protein compare
Atu1454 -1.8 -7.3 siroheme synthase compare
Atu0641 -1.8 -3.4 hypothetical protein compare
Atu2747 -1.7 -8.4 hypothetical protein compare
Atu4609 -1.7 -9.5 glycosyltransferase compare
Atu2239 -1.7 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu5164 -1.7 -0.8 type IV secretion protein AvhB3 compare
Atu4618 -1.7 -7.9 dTDP-rhamnose-3,5-epimerase compare
Atu0876 -1.7 -2.0 superoxide dismutase compare
Atu6114 -1.7 -2.2 hypothetical protein compare
Atu1455 -1.6 -4.1 hypothetical protein compare
Atu4096 -1.5 -5.4 nicotinate-nucleotide pyrophosphorylase compare
Atu0976 -1.5 -2.9 cycL protein compare
Atu1748 -1.5 -6.5 NIFU-like protein compare
Atu1589 -1.5 -4.7 aminotransferase, class I compare
Atu2249 -1.5 -1.2 hypothetical protein compare
Atu4615 -1.5 -5.8 glucose-1-phosphate thymidylyltransferase compare
Atu4097 -1.5 -6.8 L-aspartate oxidase compare
Atu3731 -1.5 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu2155 -1.5 -9.2 methionine synthase compare
Atu4297 -1.5 -6.0 AraC family transcriptional regulator compare
Atu6098 -1.5 -0.7 transcriptional regulator, HTH family compare
Atu3353 -1.4 -6.1 mannose-1-phosphate guanylyltransferase compare
Atu4614 -1.4 -5.4 glycosyltransferase compare
Atu4451 -1.4 -5.8 mannitol 2-dehydrogenase conserved
Atu1546 -1.4 -4.0 transcriptional regulator, MerR family compare
Atu3120 -1.4 -1.2 hypothetical protein compare
Atu4610 -1.4 -7.4 sugar nucleotide epimerase/dehydratase compare
Atu0837 -1.4 -4.7 transcriptional regulator, MarR family compare
Atu0189 -1.3 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu4608 -1.3 -6.9 hypothetical protein compare
Atu3429 -1.3 -1.4 hypothetical protein compare
Atu3469 -1.3 -1.6 phosphoglyceromutase compare
Atu1242 -1.3 -6.4 cytochrome oxidase assembly factor compare
Atu2183 -1.3 -6.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0792 -1.3 -4.6 hypothetical protein compare
Atu4296 -1.2 -7.0 dehydrogenase compare
Atu0040 -1.2 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1686 -1.2 -7.8 peptidyl-prolyl cis-trans isomerse D compare
Atu4514 -1.2 -2.7 RpiR family transcriptional regulator compare
Atu2286 -1.1 -1.2 hypothetical protein compare
Atu1470 -1.1 -1.0 Camphor resistance protein compare
Atu1074 -1.1 -6.0 NAD/NADP dependent oxidoreductase compare
Atu0030 -1.1 -1.2 phosphocarrier protein HPr compare
Atu2442 -1.1 -1.6 hypothetical protein compare
Atu5155 -1.1 -2.0 MarR family transcriptional regulator compare
Atu3598 -1.1 -1.5 thiol:disulfide interchange protein compare
Atu3280 -1.1 -5.3 GntR family transcriptional regulator compare
Atu0768 -1.1 -4.9 cytochrome-c oxidase chain I compare
Atu0062 -1.1 -4.9 transcriptional regulator, ROK family compare
Atu0895 -1.0 -1.7 ABC transporter, substrate binding protein compare
Atu4075 -1.0 -3.9 glycogen synthase compare
Atu3311 -1.0 -6.0 phosphomannose isomerase compare
Atu0031 -1.0 -1.0 PTS system, IIA component compare
Atu0566 -1.0 -1.2 hypothetical protein compare
Atu2532 -1.0 -2.7 transcriptional regulator, MarR family compare
Atu2237 -1.0 -3.1 cytochrome c1 compare
Atu0357 -0.9 -4.6 phosphate starvation inducible protein compare
Atu0303 -0.9 -3.0 hypothetical protein compare
Atu0590 -0.9 -4.3 transcriptional regulator repressor compare
Atu2238 -0.9 -3.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2495 -0.9 -2.8 flavoprotein oxidoreductase compare
Atu2578 -0.9 -3.2 cAMP-dependent protein kinase regulatory subunit compare
Atu8118 -0.9 -3.5 putative universal stress protein compare
Atu4166 -0.9 -1.1 UDP-glucose 4-epimerase compare
Atu2787 -0.8 -0.7 hypothetical protein compare
Atu2777 -0.8 -5.1 hypothetical protein compare
Atu1019 -0.8 -1.8 hypothetical protein compare
Atu1463 -0.8 -3.1 glycine cleavage system component H compare
Atu2472 -0.8 -0.9 hypothetical protein compare
Atu5485 -0.8 -0.9 hypothetical protein compare
Atu0886 -0.8 -0.9 hypothetical protein compare
Atu2205 -0.8 -1.6 transcriptional regulator, MarR family compare
Atu3164 -0.8 -3.2 sorbitol dehydrogenase compare
Atu3144 -0.8 -2.4 GntR family transcriptional regulator compare
Atu1457 -0.8 -1.3 hypothetical protein compare
Atu0421 -0.8 -0.9 ABC transporter, membrane spanning protein compare
Atu0769 -0.8 -0.8 protoheme IX farnesyltransferase compare
Atu0777 -0.8 -0.6 hypothetical protein compare
Atu1604 -0.8 -4.8 poly-beta-hydroxybutyrate synthase compare
Atu0606 -0.8 -0.6 hypothetical protein compare
Atu0381 -0.8 -1.4 hypothetical protein compare
Atu6047 -0.8 -3.8 conserved hypothetical protein compare
Atu2719 -0.8 -4.3 aldose epimerase compare
Atu4773 -0.8 -1.1 two component response regulator compare
Atu0771 -0.7 -3.7 cytochrome c oxidase subunit III compare
Atu3878 -0.7 -4.5 transcriptional regulator compare
Atu0785 -0.7 -1.8 ribosomal-protein (S5)-alanine N-acetyltransferase compare
Atu2352 -0.7 -1.2 hypothetical protein compare
Atu1149 -0.7 -0.9 adenylate cyclase compare
Atu0770 -0.7 -2.5 cytochrome C oxidase assembly protein compare
Atu8145 -0.7 -1.5 hypothetical protein compare
Atu3776 -0.7 -2.2 hypothetical protein compare
Atu0101 -0.7 -2.0 cytochrome c compare
Atu2827 -0.7 -1.9 hypothetical protein compare
Atu6133 -0.7 -1.9 conserved hypothetical protein compare
Atu3342 -0.7 -2.6 trehalose utilization-like protein compare
Atu1971 -0.7 -1.9 hypothetical protein compare
Atu4685 -0.7 -3.7 LacI family transcriptional regulator compare
Atu0894 -0.7 -0.8 ABC transporter, membrane spanning protein compare
Atu3337 -0.7 -4.1 LacI family transcriptional regulator compare
Atu4838 -0.7 -2.4 outer membrane lipoprotein compare
Atu4674 -0.7 -3.5 GntR family transcriptional regulator compare
Atu1334 -0.7 -2.6 aspartate transaminase compare
Atu1952 -0.7 -1.0 hypothetical protein compare
Atu1774 -0.7 -2.6 ABC transporter, substrate binding protein (peptide) compare
Atu3908 -0.7 -3.6 GntR family transcriptional regulator compare
Atu0153 -0.7 -2.2 transcriptional regulator, Fur family compare
Atu4702 -0.7 -2.6 GntR family transcriptional regulator compare
Atu5517 -0.7 -1.1 hypothetical protein compare
Atu1464 -0.7 -2.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu0479 -0.7 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu0887 -0.7 -2.9 acetyltransferase compare
Atu2192 -0.7 -0.8 hypothetical protein compare
Atu1286 -0.6 -1.6 hypothetical protein compare
Atu8165 -0.6 -2.2 hypothetical protein compare
Atu5519 -0.6 -1.6 hypothetical protein compare
Atu1694 -0.6 -1.4 hypothetical protein compare
Atu5545 -0.6 -2.2 hypothetical protein compare
Atu1553 -0.6 -2.9 hypothetical protein compare
Atu4837 -0.6 -2.1 hypothetical protein compare
Atu8166 -0.6 -2.2 hypothetical protein compare
Atu3152 -0.6 -2.7 AraC family transcriptional regulator compare
Atu1760 -0.6 -0.7 hypothetical protein compare
Atu5493 -0.6 -1.5 hypothetical protein compare
Atu5080 -0.6 -2.2 ABC transporter membrane spanning protein (sugar) compare
Atu0467 -0.6 -1.3 hypothetical protein compare
Atu0925 -0.6 -1.6 hypothetical protein compare
Atu2669 -0.6 -1.9 RhtB family transporter compare
Atu3169 -0.6 -2.1 sorbitol/mannitol ABC transporter permease compare
Atu3496 -0.6 -0.9 hypothetical protein compare
Atu4319 -0.6 -3.2 AraC family transcriptional regulator compare
Atu8088 -0.6 -0.9 hypothetical protein compare
Atu0986 -0.6 -0.7 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Sorbitol in Agrobacterium fabrum C58

For carbon source D-Sorbitol across organisms